>SRPR_DROME (Q9U5L1) Signal recognition particle receptor alpha subunit homolog|
           (SR-alpha) (Docking protein alpha) (DP-alpha)
           (GTP-binding protein)
          Length = 614

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 558 VCMYLVMN-ITILITAADPRRIG--RQLGKHTEHINNTEPAER 439
           +C +L+ N   +LI A D  R G   QL  HT H+N   PA +
Sbjct: 415 ICFWLIENDFNVLIAACDTFRAGAVEQLRTHTRHLNALHPAAK 457

>OMPV_VIBAN (O08237) Outer membrane protein Omp26La precursor|
          Length = 257

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = -2

Query: 586 ATDLVVFSMCMYVSCDEYNNTYYGCRSKEDRKATRQAY 473
           A DLV F+   Y S D YNN Y+G + KE   A R+AY
Sbjct: 163 AVDLVPFAGISYQSSD-YNNYYFGVKDKE-ATAQRKAY 198

>LYSC_LYSEN (Q7M135) Lysyl endopeptidase (EC 3.4.21.50) (Lys-C)|
          Length = 269

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = +3

Query: 48  IFWSLVDG-PGPGVRREYIHQSTTRVLLQVRRCGGSCSVTGGDSRSEEMGRRCGSGNGAA 224
           +FW    G   PG     I+    RVL Q+     SCS TG D RS+  GR   S  G  
Sbjct: 180 VFWQASGGVTEPGSSGSPIYSPEKRVLGQLHGGPSSCSATGAD-RSDYYGRVFTSWTGGG 238

Query: 225 EDDKSSLAVSPW 260
               S+  +S W
Sbjct: 239 ---TSATRLSDW 247

>OMPV_VIBCH (P06111) Outer membrane protein ompV precursor|
          Length = 257

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = -2

Query: 580 DLVVFSMCMYVSCDEYNNTYYGCRSKEDRKATRQAY 473
           DLV F+   Y S D YNN Y+G + KE   A R+AY
Sbjct: 165 DLVPFAGISYQSSD-YNNYYFGVKDKE-ATAQRKAY 198

>RHAR_YERPS (Q66FF1) HTH-type transcriptional activator rhaR (L-rhamnose operon|
           transcriptional activator rhaR)
          Length = 290

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 90  REYIHQSTTRVLLQVRRCGGSCSVTGGDSRSEEMGRRCG 206
           R+    S +  L Q+R C   C + G + R  ++  RCG
Sbjct: 214 RQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCG 252

>RHAR_YERPE (Q8ZIZ9) HTH-type transcriptional activator rhaR (L-rhamnose operon|
           transcriptional activator rhaR)
          Length = 290

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 90  REYIHQSTTRVLLQVRRCGGSCSVTGGDSRSEEMGRRCG 206
           R+    S +  L Q+R C   C + G + R  ++  RCG
Sbjct: 214 RQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCG 252


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,519,366
Number of Sequences: 219361
Number of extensions: 1687547
Number of successful extensions: 5255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5254
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)