ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2i13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YXX5_CAEEL (Q18179) Putative neuropeptide Y receptor (NPY-R) 29 2.6
2HS90A_HORSE (Q9GKX7) Heat shock protein HSP 90-alpha (HSP 86) (F... 28 5.9
3HS90A_CHICK (P11501) Heat shock protein HSP 90-alpha 28 5.9
4HS90A_PIG (O02705) Heat shock protein HSP 90-alpha (HSP 86) 28 5.9
5HS90A_MOUSE (P07901) Heat shock protein HSP 90-alpha (HSP 86) (T... 28 5.9
6HS90A_CRIGR (P46633) Heat shock protein HSP 90-alpha (HSP 86) 28 5.9
7HS90A_HUMAN (P07900) Heat shock protein HSP 90-alpha (HSP 86) (N... 28 5.9

>YXX5_CAEEL (Q18179) Putative neuropeptide Y receptor (NPY-R)|
          Length = 455

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 160 SVMHIYDRHNLVASGSNTSFSILHTF*LVEAALLVISYA 276
           +V HI++   LV S S T+FSI H   +  A L  + YA
Sbjct: 288 NVFHIFNTFELVNSFSVTTFSICHCLAMCSACLNPLIYA 326



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>HS90A_HORSE (Q9GKX7) Heat shock protein HSP 90-alpha (HSP 86) (Fragment)|
          Length = 719

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 236 NVCKIENEVFEPEATKLCLSYMCITDYCC 150
           N+CKI  ++ E +  K+ +S   +T  CC
Sbjct: 560 NLCKIMKDILEKKVEKVVVSNRLVTSPCC 588



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>HS90A_CHICK (P11501) Heat shock protein HSP 90-alpha|
          Length = 728

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 236 NVCKIENEVFEPEATKLCLSYMCITDYCC 150
           N+CKI  ++ E +  K+ +S   +T  CC
Sbjct: 566 NLCKIMKDILEKKVEKVVVSNRLVTSPCC 594



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>HS90A_PIG (O02705) Heat shock protein HSP 90-alpha (HSP 86)|
          Length = 732

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 236 NVCKIENEVFEPEATKLCLSYMCITDYCC 150
           N+CKI  ++ E +  K+ +S   +T  CC
Sbjct: 570 NLCKIMKDILEKKVEKVVVSNRLVTSPCC 598



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>HS90A_MOUSE (P07901) Heat shock protein HSP 90-alpha (HSP 86) (Tumor-specific|
           transplantation 86 kDa antigen) (TSTA)
          Length = 732

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 236 NVCKIENEVFEPEATKLCLSYMCITDYCC 150
           N+CKI  ++ E +  K+ +S   +T  CC
Sbjct: 570 NLCKIMKDILEKKVEKVVVSNRLVTSPCC 598



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>HS90A_CRIGR (P46633) Heat shock protein HSP 90-alpha (HSP 86)|
          Length = 732

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 236 NVCKIENEVFEPEATKLCLSYMCITDYCC 150
           N+CKI  ++ E +  K+ +S   +T  CC
Sbjct: 570 NLCKIMKDILEKKVEKVVVSNRLVTSPCC 598



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>HS90A_HUMAN (P07900) Heat shock protein HSP 90-alpha (HSP 86) (NY-REN-38|
           antigen)
          Length = 731

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 236 NVCKIENEVFEPEATKLCLSYMCITDYCC 150
           N+CKI  ++ E +  K+ +S   +T  CC
Sbjct: 569 NLCKIMKDILEKKVEKVVVSNRLVTSPCC 597


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,165,791
Number of Sequences: 219361
Number of extensions: 726320
Number of successful extensions: 1538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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