ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2h22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CU24_ARADI (P80516) Adult-specific rigid cuticular protein 12.4 ... 32 1.6
2DACT2_BRARE (Q673G8) Dapper homolog 2 (Frodo 2) 31 2.8
3CN044_HUMAN (Q96MY7) Protein C14orf44 31 2.8
4GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC 6.3... 30 4.8

>CU24_ARADI (P80516) Adult-specific rigid cuticular protein 12.4 (ACP 12.4)|
          Length = 126

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = -3

Query: 419 MLCGEGVYSQSFNNNGIIAHSRVASGCVGPVIDDYIYGD 303
           M    G Y+  FN      HSRV SG  G  +  Y Y D
Sbjct: 5   MTLAGGAYNFGFNTGDATGHSRVESGTAGSAVGSYSYID 43



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>DACT2_BRARE (Q673G8) Dapper homolog 2 (Frodo 2)|
          Length = 837

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -1

Query: 574 NDGTKGALVLSCERDTSQALKKHVACTVSTMVVGLHTQQGRVSVGATSSLRRCYAEK 404
           +DG  G+L  SC    S++L      ++  ++   +   GR S G T   RRC A++
Sbjct: 135 SDGGSGSLSNSCTSVYSESLSSSSQTSLLPLLSTSYASHGRSSCGQTGVSRRCSADE 191



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>CN044_HUMAN (Q96MY7) Protein C14orf44|
          Length = 647

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -2

Query: 615 CGYTSQCSSLLNVPTMAPRVRLCCPVSVTPPRH*RN 508
           CG T +CSSL N+P+  PR +   P    PP   R+
Sbjct: 126 CGSTRRCSSLNNLPSNIPRPQTQPPSGSRPPSQHRS 161



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>GUAA_SYNPX (Q7UA53) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 528

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = +2

Query: 347 LPHGCVR*SHCC*MTVNTPLLRIASSQTRCRAHGNSPLLGVQSYYHGTHSTCNVFL 514
           LP G VR +H    T NTP   +A  Q R        L GVQ +    HSTC + L
Sbjct: 147 LPEGFVRLAH----TANTPEAAVAHLQRR--------LYGVQFHPEVVHSTCGMAL 190


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,060,647
Number of Sequences: 219361
Number of extensions: 2166169
Number of successful extensions: 4944
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4942
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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