>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 274      gacaagggcaaaagggtcattttcaca 300
                |||||||||||| ||||||||||||||
Sbjct: 32934366 gacaagggcaaatgggtcattttcaca 32934340

>gb|AC093713.6| Oryza sativa chromosome 3 BAC OSJNBa0094F01 genomic sequence, complete
             sequence
          Length = 151479

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 274   gacaagggcaaaagggtcattttcaca 300
             |||||||||||| ||||||||||||||
Sbjct: 55809 gacaagggcaaatgggtcattttcaca 55835

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 274      gacaagggcaaaagggtcattttcaca 300
                |||||||||||| ||||||||||||||
Sbjct: 33024876 gacaagggcaaatgggtcattttcaca 33024850

>ref|NM_185887.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2019

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 336 gggatcgacgagacgaagccg 356
           |||||||||||||||||||||
Sbjct: 674 gggatcgacgagacgaagccg 654

>ref|NM_194372.1| Danio rerio wu:fc23f06 (wu:fc23f06), mRNA
          Length = 3575

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 360  gttttggaatcacctcaatcg 380
            |||||||||||||||||||||
Sbjct: 3476 gttttggaatcacctcaatcg 3496

>gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosome 16, complete sequence
          Length = 170842

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 432    aaaataaattcctacaaacag 452
              |||||||||||||||||||||
Sbjct: 122101 aaaataaattcctacaaacag 122081

>emb|BX649466.19| Zebrafish DNA sequence from clone DKEY-31C8 in linkage group 12,
             complete sequence
          Length = 101015

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 429   ataaaaataaattcctacaaacagg 453
             ||||||||||||||||||| |||||
Sbjct: 73541 ataaaaataaattcctacacacagg 73565

>gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome 16, complete
            sequence
          Length = 213324

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 432  aaaataaattcctacaaacag 452
            |||||||||||||||||||||
Sbjct: 9203 aaaataaattcctacaaacag 9223

>emb|AL713958.11| Mouse DNA sequence from clone RP23-370F7 on chromosome 11 Contains the
             5' end of a novel gene, the 3' end of the Cyfip2 gene for
             cytoplasmic FMR1 interacting protein 2 and a CpG island,
             complete sequence
          Length = 105696

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 261   ggggctgattggagacaaggg 281
             |||||||||||||||||||||
Sbjct: 39789 ggggctgattggagacaaggg 39769

>gb|AF250352.1|AF250352 Danio rerio hepatocyte nuclear factor 1-gamma mRNA, complete cds
          Length = 3575

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 360  gttttggaatcacctcaatcg 380
            |||||||||||||||||||||
Sbjct: 3476 gttttggaatcacctcaatcg 3496

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 277      aagggcaaaagggtcattttc 297
                |||||||||||||||||||||
Sbjct: 10303256 aagggcaaaagggtcattttc 10303236

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 336      gggatcgacgagacgaagccg 356
                |||||||||||||||||||||
Sbjct: 21088115 gggatcgacgagacgaagccg 21088095

>gb|AC152453.4| Mus musculus BAC clone RP24-238B3 from chromosome 10, complete sequence
          Length = 182371

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 421   acctatccataaaaataaatt 441
             |||||||||||||||||||||
Sbjct: 90246 acctatccataaaaataaatt 90266

>dbj|AP005810.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0696F12
          Length = 165227

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 336  gggatcgacgagacgaagccg 356
            |||||||||||||||||||||
Sbjct: 9476 gggatcgacgagacgaagccg 9456

>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1058_A12
          Length = 152269

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 336    gggatcgacgagacgaagccg 356
              |||||||||||||||||||||
Sbjct: 131414 gggatcgacgagacgaagccg 131394

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 277      aagggcaaaagggtcattttc 297
                |||||||||||||||||||||
Sbjct: 10303138 aagggcaaaagggtcattttc 10303118

>emb|AL935069.5|CNS08CCL Oryza sativa chromosome 12, . BAC OSJNBb0115B15 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135439

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 277   aagggcaaaagggtcattttc 297
             |||||||||||||||||||||
Sbjct: 66175 aagggcaaaagggtcattttc 66155

>gb|AC112790.5| Mus musculus BAC clone RP23-160A1 from 10, complete sequence
          Length = 211714

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 421    acctatccataaaaataaatt 441
              |||||||||||||||||||||
Sbjct: 203132 acctatccataaaaataaatt 203152

>emb|AL359697.23| Human DNA sequence from clone RP11-399C16 on chromosome 10 Contains the
              3' end of the MLLT10 gene for myeloid/lymphoid or
              mixed-lineage leukemia (trithorax homolog, Drosophila);
              translocated to, 10 (AF10), the 3' end of the DNAJC1 gene
              for DnaJ (Hsp40) homolog, subfamily C, member 1 (DNAJL1)
              and a CpG island, complete sequence
          Length = 171868

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    acctggggttgaagaatact 201
              ||||||||||||||||||||
Sbjct: 150013 acctggggttgaagaatact 149994

>emb|AL357041.11| Human DNA sequence from clone RP11-221L2 on chromosome 1 Contains ESTs,
             STSs and GSSs, complete sequence
          Length = 130794

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   tatgtgaacctggggttgaa 194
             ||||||||||||||||||||
Sbjct: 18788 tatgtgaacctggggttgaa 18807

>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   gaagtttagggacctatcca 429
             ||||||||||||||||||||
Sbjct: 76767 gaagtttagggacctatcca 76786

>emb|AL646001.7| Mouse DNA sequence from clone RP23-10B17 on chromosome 11 Contains the
             5' end of a variant of the Odz2 gene for odd Oz/ten-m
             homolog 2 (Drosophila), complete sequence
          Length = 194171

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    ctccaatccacagggatctg 114
             ||||||||||||||||||||
Sbjct: 67856 ctccaatccacagggatctg 67875

>gb|AC158676.12| Mus musculus 6 BAC RP23-146N13 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 204560

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    gatccttatgtgaacctggg 188
              ||||||||||||||||||||
Sbjct: 190389 gatccttatgtgaacctggg 190370

>gb|AC010365.5|AC010365 Homo sapiens chromosome 19 clone CTD-2043I16, complete sequence
          Length = 106146

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   gaaaatgctatcaacatgac 335
             ||||||||||||||||||||
Sbjct: 43891 gaaaatgctatcaacatgac 43910

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    cgcctccgggccgagtacgc 494
              ||||||||||||||||||||
Sbjct: 676903 cgcctccgggccgagtacgc 676884

>emb|CT030184.14| Mouse DNA sequence from clone RP23-9C19 on chromosome 13, complete
             sequence
          Length = 201341

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   aaaagggtcattttcacagt 302
             ||||||||||||||||||||
Sbjct: 38225 aaaagggtcattttcacagt 38244

>emb|AJ718048.1| Nicotiana tabacum cDNA-AFLP-fragment BSTT24-2-310, cultivar Bright
           Yellow 2
          Length = 239

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 276 caagggcaaaagggtcattt 295
           ||||||||||||||||||||
Sbjct: 115 caagggcaaaagggtcattt 134

>gb|AC006500.4|AC006500 Homo sapiens, clone hRPK.31_A_1, complete sequence
          Length = 147699

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   tatgtgaacctggggttgaa 194
             ||||||||||||||||||||
Sbjct: 87358 tatgtgaacctggggttgaa 87339

>emb|Y08557.1|TEMELA Thermoanaerobacter ethanolicus melA gene for melibiase, lacA gene for
            beta-galactosidase and ORF3 DNA for hypothetical protein
          Length = 4936

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 431  aaaaataaattcctacaaac 450
            ||||||||||||||||||||
Sbjct: 4189 aaaaataaattcctacaaac 4208

>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 267    gattggagacaagggcaaaagggt 290
              |||||||||||||||||| |||||
Sbjct: 858969 gattggagacaagggcaagagggt 858992

>emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chromosome 13, complete
              sequence
          Length = 222942

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 283    aaaagggtcattttcacagt 302
              ||||||||||||||||||||
Sbjct: 178118 aaaagggtcattttcacagt 178137

>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    cgcctccgggccgagtacgc 494
              ||||||||||||||||||||
Sbjct: 347542 cgcctccgggccgagtacgc 347523

>gb|M59301.1|PSECOMPA P.denitrificans cobF through cobM genes, complete cds
          Length = 8753

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 338  gatcgacgagacgaagccga 357
            ||||||||||||||||||||
Sbjct: 8397 gatcgacgagacgaagccga 8416


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,653,718
Number of Sequences: 3902068
Number of extensions: 4653718
Number of successful extensions: 80786
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80584
Number of HSP's gapped (non-prelim): 202
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)