ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd2g19 |
|---|---|
| Clone Library Name | barley_pub |
>YO125_YEAST (Q12383) Uncharacterized protein YOL125W| Length = 476 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%) Frame = +2 Query: 38 LTRAHQNNFTCVQQNI---SASVSAQKKNPTSAESHIKRVPQRLDENH 172 +TR+ QN + N+ +A+ KN + AE +RVP LD NH Sbjct: 34 MTRSSQNLYCSEHLNLMKKAANSQVHNKNGSEAEKERERVPCPLDPNH 81
>YL333_MIMIV (Q5UQS0) Hypothetical protein L333| Length = 203 Score = 30.0 bits (66), Expect = 1.5 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = +2 Query: 80 NISASVSAQKKNPTSAESHIKRVPQRLDENHKFLLILFLCTIEDKKCKARYKVK 241 ++S+S S KN S E I R+ +D + + +CTI KC +K Sbjct: 33 SLSSSSSVISKNDLSREKIINRIKNLIDNKFSYNKNIKICTIIKNKCMIIQTIK 86
>AROH_SHIFL (P59736) Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive| (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Length = 348 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 164 ENHKFLLILFLCTIEDKKCKARYKVKGATVRNIYESRAASVRSTH 298 E+ + L+I+ C+I D Y + ++RN Y+SR V T+ Sbjct: 49 EDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTY 93
>AROH_ECOLI (P00887) Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive| (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Length = 348 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 164 ENHKFLLILFLCTIEDKKCKARYKVKGATVRNIYESRAASVRSTH 298 E+ + L+I+ C+I D Y + ++RN Y+SR V T+ Sbjct: 49 EDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTY 93
>AROH_ECOL6 (Q8FH32) Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive| (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Length = 348 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 164 ENHKFLLILFLCTIEDKKCKARYKVKGATVRNIYESRAASVRSTH 298 E+ + L+I+ C+I D Y + ++RN Y+SR V T+ Sbjct: 49 EDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTY 93
>AROH_ECO57 (Q8X5W4) Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive| (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Length = 348 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 164 ENHKFLLILFLCTIEDKKCKARYKVKGATVRNIYESRAASVRSTH 298 E+ + L+I+ C+I D Y + ++RN Y+SR V T+ Sbjct: 49 EDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTY 93
>CR015_HUMAN (Q96N68) Protein C18orf15| Length = 181 Score = 28.9 bits (63), Expect = 3.3 Identities = 8/29 (27%), Positives = 15/29 (51%) Frame = -1 Query: 127 CTCWVLFLCTYTCRNILLYTCKIILMCPC 41 C C + +C + C + + C ++ MC C Sbjct: 128 CMCACMCVCVHVCACVYVCMCVLVCMCAC 156
>IF2_HELPY (P55972) Translation initiation factor IF-2| Length = 944 Score = 28.1 bits (61), Expect = 5.6 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 71 VQQNISASVSAQKKNPTSAESHIKR 145 ++QNI+ V Q+KNP ES IKR Sbjct: 322 IRQNINDRVRVQRKNPWMNESGIKR 346
>YK17_SCHPO (Q9HDY3) Membrane protein PB1A10.07c| Length = 441 Score = 28.1 bits (61), Expect = 5.6 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Frame = -1 Query: 241 FHFVACFALLVFYCAEEEDEKKLVVLIQSLWNSLYVR----FCTCWVLFLCTYTCRNILL 74 FH V F L FY A + ++ N ++VR + WV + ++ C + + Sbjct: 369 FHIV--FVLAAFYTASLLTNWNTTSVYENQKNDVFVRIGFSYAAVWVKIITSWVCHGLYV 426 Query: 73 YTC 65 ++C Sbjct: 427 WSC 429
>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) Length = 753 Score = 28.1 bits (61), Expect = 5.6 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%) Frame = +2 Query: 68 CVQQNISASVSAQK---KNPTSAESHIKRVPQRLDENHKFLLILFLCTIEDKKCKARYKV 238 C Q++ + S + + P S E HIKR+ QR N FL K C AR Sbjct: 508 CTQEDAEVAESPLRILAETPDSFEKHIKRILQRSAANPAFL----------KNCSARSSE 557 Query: 239 K 241 K Sbjct: 558 K 558
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +2 Query: 56 NNFTCVQQNISASVSAQKKNPTSA 127 N TC+QQNI S S Q+ NP ++ Sbjct: 814 NPRTCIQQNIPRSSSTQQDNPKTS 837
>AROH_ENTAG (O54459) Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive| (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) Length = 348 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +2 Query: 164 ENHKFLLILFLCTIEDKKCKARYKVKGATVRNIYESR 274 E+H+ L+++ C++ D K Y + +R YE R Sbjct: 49 EDHRLLVVIGPCSLHDPKAALEYAERLNALRRRYEDR 85
>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) (Low-voltage-activated calcium channel alpha1 3.2 subunit) Length = 2353 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = -1 Query: 181 KKLVVLIQSLWNSLYVRFCTCWVLFLCTYTCRNILLYTCKIIL 53 ++LVVL++++ N FCT +LF+ ++ + L+ CK L Sbjct: 903 RQLVVLVKTMDN--VATFCTLLMLFIFIFSILGMHLFGCKFSL 943
>GERM_BACSU (P39072) Germination protein gerM| Length = 366 Score = 27.7 bits (60), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 265 INISNSGTFHFVACFALLVFYCAEEEDEKKLVVLIQSLWNS 143 IN+ +G A L V+Y AE ED + V + + + NS Sbjct: 210 INLETAGVNDLTATHPLTVYYLAENEDSEYYVPVTKRIDNS 250
>GLND_NITMU (Q2Y5Q1) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 887 Score = 27.3 bits (59), Expect = 9.6 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +2 Query: 71 VQQNISASVSAQKKNPTSAESHIKRVPQRLDENHKFLLILFLCTIED 211 V+ ++ S +AQKK+ AE DE H L+ L+L T+ D Sbjct: 533 VENHLHMSATAQKKDIADAEVIADFAASMRDERH--LIALYLLTVSD 577
>HXC10_MOUSE (P31257) Homeobox protein Hox-C10 (Hox-3.6)| Length = 342 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +1 Query: 88 CKCKCTEKEPNKCRIAHKESSTKIG*EPQVSSHPLP 195 C + KE N C + E K G E + SHPLP Sbjct: 99 CSYPPSVKEENVCCMYSAEKRAKSGPEAALYSHPLP 134
>HXC10_HUMAN (Q9NYD6) Homeobox protein Hox-C10| Length = 342 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +1 Query: 88 CKCKCTEKEPNKCRIAHKESSTKIG*EPQVSSHPLP 195 C + KE N C + E K G E + SHPLP Sbjct: 99 CSYPPSVKEENVCCMYSAEKRAKSGPEAALYSHPLP 134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,467,137 Number of Sequences: 219361 Number of extensions: 870406 Number of successful extensions: 2578 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2506 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2571 length of database: 80,573,946 effective HSP length: 89 effective length of database: 61,050,817 effective search space used: 1465219608 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
