ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2d21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X56547.1|HSBLT4 H. vulgare BLT4 mRNA 74 3e-11
2emb|Z37114.1|HVLTPPA H.vulgare (clone pKG2316) mRNA for lipid tr... 58 2e-06
3emb|X68655.1|HVCW18 H.vulgare Cw-18 mRNA 58 2e-06
4gb|AC102004.7| Mus musculus chromosome 15, clone RP24-489M6, com... 36 6.2
5gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome... 36 6.2
6gb|AC102481.10| Mus musculus chromosome 1, clone RP24-427A3, com... 36 6.2
7gb|AC121879.3| Mus musculus chromosome 19 clone RP24-132B24, com... 36 6.2
8gb|AC159286.3| Mus musculus BAC clone RP23-314E22 from chromosom... 36 6.2
9gb|AC110509.21| Mus musculus chromosome 8, clone RP24-423G4, com... 36 6.2
10gb|AC157569.12| Mus musculus chromosome 3, clone RP23-434M21, co... 36 6.2
11gb|AC130281.13| Mus musculus chromosome 3, clone RP23-372I17, co... 36 6.2
12gb|AY018342.1| Oryza sativa microsatellite MRG0667 containing (A... 36 6.2
13gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome... 36 6.2
14gb|AC120004.14| Mus musculus chromosome 5, clone RP24-150N15, co... 36 6.2
15gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, com... 36 6.2
16gb|AC164600.5| Mus musculus chromosome 1, clone RP23-366M5, comp... 36 6.2
17gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, compl... 36 6.2
18gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, com... 36 6.2
19gb|AC074257.5| Homo sapiens BAC clone RP11-796I2 from 7, complet... 36 6.2
20gb|AC147771.1| Homo sapiens chromosome 16 clone PCR-16A03, compl... 36 6.2
21gb|AC122199.4| Mus musculus BAC clone RP23-57C9 from chromosome ... 36 6.2
22gb|AC122466.2| Mus musculus BAC clone RP24-304N8 from chromosome... 36 6.2
23gb|AC124200.4| Mus musculus BAC clone RP23-328F5 from chromosome... 36 6.2
24gb|AC122872.3| Mus musculus BAC clone RP23-110E8 from 1, complet... 36 6.2
25gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, com... 36 6.2
26emb|AL357079.24| Human DNA sequence from clone RP11-7O11 on chro... 36 6.2
27gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosom... 36 6.2
28gb|AC153837.4| Mus musculus 6 BAC RP23-192D5 (Roswell Park Cance... 36 6.2
29emb|AL611944.10| Mouse DNA sequence from clone RP23-279E14 on ch... 36 6.2
30dbj|AK095100.1| Homo sapiens cDNA FLJ37781 fis, clone BRHIP2027054 36 6.2
31gb|AC021642.14| Mus musculus chromosome 10 clone RP23-113O5, co... 36 6.2
32gb|AC108114.3| Homo sapiens chromosome 5 clone RP11-289K10, comp... 36 6.2
33gb|AC093900.3| Homo sapiens BAC clone RP11-730E1 from 4, complet... 36 6.2
34gb|AC027329.4| Homo sapiens chromosome 5 clone CTD-2143A15, comp... 36 6.2
35gb|AC092834.3| Homo sapiens BAC clone RP13-497K6 from 4, complet... 36 6.2
36gb|AC140912.2| Homo sapiens chromosome 16 clone XXfos-88206B9, c... 36 6.2
37gb|AC149590.5| Mus musculus BAC clone RP23-348L9 from chromosome... 36 6.2
38gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosom... 36 6.2
39gb|AC131795.3| Mus musculus BAC clone RP24-490N11 from 10, compl... 36 6.2
40gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complet... 36 6.2
41emb|AL611968.7| Mouse DNA sequence from clone RP23-29D6 on chrom... 36 6.2
42emb|AL691419.10| Mouse DNA sequence from clone RP23-95I4 on chro... 36 6.2
43emb|AL732525.13| Mouse DNA sequence from clone RP23-358I10 on ch... 36 6.2
44gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, com... 36 6.2 
>emb|X56547.1|HSBLT4 H. vulgare BLT4 mRNA
          Length = 724

 Score = 73.8 bits (37), Expect = 3e-11
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 1   catgtatntgtntatatgtgtatgngacctcaacctaccaagcgtc 46
           ||||||| ||| |||||||||||| |||||||||||||||||||||
Sbjct: 496 catgtatatgtatatatgtgtatgtgacctcaacctaccaagcgtc 451
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>emb|Z37114.1|HVLTPPA H.vulgare (clone pKG2316) mRNA for lipid transfer protein precursor
          Length = 627

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 1   catgtatntgtntatatgtgtatgngacctcaacctaccaagcgtc 46
           ||||||| ||| |||||| ||||| ||||||||||| |||||||||
Sbjct: 440 catgtatatgtatatatgcgtatgtgacctcaacctgccaagcgtc 395
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>emb|X68655.1|HVCW18 H.vulgare Cw-18 mRNA
          Length = 732

 Score = 58.0 bits (29), Expect = 2e-06
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 1   catgtatntgtntatatgtgtatgngacctcaacctaccaagcgtc 46
           ||||||| ||| |||||| ||||| ||||||||||| |||||||||
Sbjct: 511 catgtatatgtatatatgcgtatgtgacctcaaccttccaagcgtc 466
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>gb|AC102004.7| Mus musculus chromosome 15, clone RP24-489M6, complete sequence
          Length = 164810

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 56897 catgtatatgtatatatgtgtatg 56874
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>gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome 8, complete sequence
          Length = 205525

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 127482 catgtatatgtatatatgtgtatg 127505
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>gb|AC102481.10| Mus musculus chromosome 1, clone RP24-427A3, complete sequence
          Length = 145973

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 27917 catgtatatgtatatatgtgtatg 27894
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>gb|AC121879.3| Mus musculus chromosome 19 clone RP24-132B24, complete sequence
          Length = 134662

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 84408 catgtatgtgtatatatgtgtatg 84385
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>gb|AC159286.3| Mus musculus BAC clone RP23-314E22 from chromosome 14, complete
             sequence
          Length = 210984

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 25485 catgtatgtgtatatatgtgtatg 25462
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>gb|AC110509.21| Mus musculus chromosome 8, clone RP24-423G4, complete sequence
          Length = 190160

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 46521 catgtatatgtatatatgtgtatg 46498
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>gb|AC157569.12| Mus musculus chromosome 3, clone RP23-434M21, complete sequence
          Length = 205286

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 182864 catgtatatgtatatatgtgtatg 182841



 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 182634 catgtatatgtatatatgtgtatg 182657
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>gb|AC130281.13| Mus musculus chromosome 3, clone RP23-372I17, complete sequence
          Length = 216261

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 76796 catgtatatgtatatatgtgtatg 76819
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>gb|AY018342.1| Oryza sativa microsatellite MRG0667 containing (AT)X15, genomic
           sequence
          Length = 230

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                   
Query: 1   catgtatntgtntatatgtgtatg 24
           ||||||| ||| ||||||||||||
Sbjct: 224 catgtatgtgtatatatgtgtatg 201
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>gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome 19, complete sequence
          Length = 217821

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 177265 catgtatatgtgtatatgtgtatg 177288
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>gb|AC120004.14| Mus musculus chromosome 5, clone RP24-150N15, complete sequence
          Length = 199229

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 153236 catgtatgtgtgtatatgtgtatg 153259
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>gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, complete sequence
          Length = 175566

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 142501 catgtatatgtgtatatgtgtatg 142478
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>gb|AC164600.5| Mus musculus chromosome 1, clone RP23-366M5, complete sequence
          Length = 191581

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 35127 catgtatatgtatatatgtgtatg 35150
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>gb|AC121279.7| Mus musculus chromosome 3, clone RP23-4F17, complete sequence
          Length = 207763

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 176578 catgtatatgtatatatgtgtatg 176555



 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 176348 catgtatatgtatatatgtgtatg 176371
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>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence
          Length = 230184

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 166782 catgtatgtgtgtatatgtgtatg 166805
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>gb|AC074257.5| Homo sapiens BAC clone RP11-796I2 from 7, complete sequence
          Length = 186047

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 136940 catgtatgtgtgtatatgtgtatg 136963
to top
>gb|AC147771.1| Homo sapiens chromosome 16 clone PCR-16A03, complete sequence
          Length = 8715

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 24/27 (88%)
 Strand = Plus / Plus

                                      
Query: 2   atgtatntgtntatatgtgtatgngac 28
           |||||| ||| |||||||||||| |||
Sbjct: 307 atgtatatgtatatatgtgtatgtgac 333
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>gb|AC122199.4| Mus musculus BAC clone RP23-57C9 from chromosome 8, complete sequence
          Length = 202975

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                    
Query: 1    catgtatntgtntatatgtgtatg 24
            ||||||| ||| ||||||||||||
Sbjct: 9344 catgtatgtgtgtatatgtgtatg 9367
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>gb|AC122466.2| Mus musculus BAC clone RP24-304N8 from chromosome 5, complete sequence
          Length = 196687

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 148919 catgtatgtgtgtatatgtgtatg 148942
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>gb|AC124200.4| Mus musculus BAC clone RP23-328F5 from chromosome 8, complete sequence
          Length = 215638

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 191854 catgtatgtgtgtatatgtgtatg 191877
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>gb|AC122872.3| Mus musculus BAC clone RP23-110E8 from 1, complete sequence
          Length = 190644

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 72170 catgtatgtgtgtatatgtgtatg 72193
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>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                    
Query: 1    catgtatntgtntatatgtgtatg 24
            ||||||| ||| ||||||||||||
Sbjct: 7663 catgtatgtgtatatatgtgtatg 7640
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>emb|AL357079.24| Human DNA sequence from clone RP11-7O11 on chromosome 1, complete
             sequence
          Length = 106769

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 17003 catgtatttgtgtatatgtgtatg 17026
to top
>gb|AC155168.3| Mus musculus BAC clone RP23-208M17 from chromosome 10, complete sequence
          Length = 174112

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 112444 catgtatgtgtgtatatgtgtatg 112467
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>gb|AC153837.4| Mus musculus 6 BAC RP23-192D5 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 232039

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 84021 catgtatgtgtgtatatgtgtatg 84044
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>emb|AL611944.10| Mouse DNA sequence from clone RP23-279E14 on chromosome 13 Contains the
             gene for the ortholog of rat and human
             ubiquinol-cytochrome c reductase, Rieske iron-sulfur
             polypeptide 1 UQCRFS1, a novel gene and a CpG island,
             complete sequence
          Length = 194065

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 16782 catgtatatgtatatatgtgtatg 16759
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>dbj|AK095100.1| Homo sapiens cDNA FLJ37781 fis, clone BRHIP2027054
          Length = 2772

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                    
Query: 1    catgtatntgtntatatgtgtatg 24
            ||||||| ||| ||||||||||||
Sbjct: 1817 catgtatatgtatatatgtgtatg 1840
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>gb|AC021642.14| Mus musculus chromosome 10 clone  RP23-113O5, containing myf5 and myf6,
              complete sequence
          Length = 203839

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 187978 catgtatgtgtgtatatgtgtatg 187955
to top
>gb|AC108114.3| Homo sapiens chromosome 5 clone RP11-289K10, complete sequence
          Length = 161812

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                    
Query: 1    catgtatntgtntatatgtgtatg 24
            ||||||| ||| ||||||||||||
Sbjct: 1438 catgtatgtgtttatatgtgtatg 1461
to top
>gb|AC093900.3| Homo sapiens BAC clone RP11-730E1 from 4, complete sequence
          Length = 152581

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 90916 catgtatgtgtgtatatgtgtatg 90893
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>gb|AC027329.4| Homo sapiens chromosome 5 clone CTD-2143A15, complete sequence
          Length = 128683

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 70707 catgtatgtgtttatatgtgtatg 70684
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>gb|AC092834.3| Homo sapiens BAC clone RP13-497K6 from 4, complete sequence
          Length = 146708

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 102458 catgtatatgtatatatgtgtatg 102435
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>gb|AC140912.2| Homo sapiens chromosome 16 clone XXfos-88206B9, complete sequence
          Length = 41928

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 24/27 (88%)
 Strand = Plus / Minus

                                      
Query: 2   atgtatntgtntatatgtgtatgngac 28
           |||||| ||| |||||||||||| |||
Sbjct: 695 atgtatatgtatatatgtgtatgtgac 669
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>gb|AC149590.5| Mus musculus BAC clone RP23-348L9 from chromosome 5, complete sequence
          Length = 196662

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 30668 catgtatgtgtgtatatgtgtatg 30691
to top
>gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosome 5, complete sequence
          Length = 168439

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 41644 catgtatgtgtgtatatgtgtatg 41621
to top
>gb|AC131795.3| Mus musculus BAC clone RP24-490N11 from 10, complete sequence
          Length = 181961

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 142477 catgtatgtgtgtatatgtgtatg 142500
to top
>gb|AC147612.5| Mus musculus BAC clone RP23-374K9 from 6, complete sequence
          Length = 190156

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 122696 catgtatgtgtgtatatgtgtatg 122719
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>emb|AL611968.7| Mouse DNA sequence from clone RP23-29D6 on chromosome 4, complete
             sequence
          Length = 206407

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Plus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 29536 catgtatatgtgtatatgtgtatg 29559
to top
>emb|AL691419.10| Mouse DNA sequence from clone RP23-95I4 on chromosome 3, complete
              sequence
          Length = 249405

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 244776 catgtatgtgtgtatatgtgtatg 244753
to top
>emb|AL732525.13| Mouse DNA sequence from clone RP23-358I10 on chromosome 2, complete
             sequence
          Length = 220495

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                     
Query: 1     catgtatntgtntatatgtgtatg 24
             ||||||| ||| ||||||||||||
Sbjct: 30871 catgtatgtgtgtatatgtgtatg 30848
to top
>gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, complete sequence
          Length = 187001

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 22/24 (91%)
 Strand = Plus / Minus

                                      
Query: 1      catgtatntgtntatatgtgtatg 24
              ||||||| ||| ||||||||||||
Sbjct: 115679 catgtatatgtttatatgtgtatg 115656


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 204,505
Number of Sequences: 3902068
Number of extensions: 204505
Number of successful extensions: 65527
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65396
Number of HSP's gapped (non-prelim): 131
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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