ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1o21 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB027572.1| Triticum aestivum chloroplast DNA, 21.1-kb fragment bearing RNA polymerase subunit (rpo) genes Length = 21245 Score = 1203 bits (607), Expect = 0.0 Identities = 666/687 (96%), Gaps = 3/687 (0%) Strand = Plus / Minus Query: 6 ggggaacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaa 65 |||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct: 18392 ggggaacgatgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aa 18335 Query: 66 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18334 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 18275 Query: 126 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaa 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 18274 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcaggg-aa 18216 Query: 186 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18215 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 18156 Query: 246 gctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattcca 305 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 18155 gctcgttccgctcgcaatagtccgattaattccccaggcgaaaaaacattagacattcca 18096 Query: 306 tcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctatta 365 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18095 tcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctatta 18036 Query: 366 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacga 425 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 18035 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagagatacga 17976 Query: 426 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattctt 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17975 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattctt 17916 Query: 486 ggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaatt 545 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 17915 ggtatacgctcattccaatcctcaattctcctttcgagattcggggataatgaatcaatt 17856 Query: 546 gaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctc 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17855 gaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctc 17796 Query: 606 gatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatga 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17795 gatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatga 17736 Query: 666 ccattaacagttgctcctgtagtggcc 692 ||||||||||||||||||||||||||| Sbjct: 17735 ccattaacagttgctcctgtagtggcc 17709
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 1203 bits (607), Expect = 0.0 Identities = 666/687 (96%), Gaps = 3/687 (0%) Strand = Plus / Minus Query: 6 ggggaacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaa 65 |||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct: 29746 ggggaacgatgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aa 29689 Query: 66 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29688 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 29629 Query: 126 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaa 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 29628 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcaggg-aa 29570 Query: 186 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29569 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 29510 Query: 246 gctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattcca 305 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 29509 gctcgttccgctcgcaatagtccgattaattccccaggcgaaaaaacattagacattcca 29450 Query: 306 tcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctatta 365 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29449 tcttcggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctatta 29390 Query: 366 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacga 425 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 29389 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagagatacga 29330 Query: 426 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattctt 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29329 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattctt 29270 Query: 486 ggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaatt 545 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 29269 ggtatacgctcattccaatcctcaattctcctttcgagattcggggataatgaatcaatt 29210 Query: 546 gaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctc 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29209 gaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctc 29150 Query: 606 gatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatga 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29149 gatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatga 29090 Query: 666 ccattaacagttgctcctgtagtggcc 692 ||||||||||||||||||||||||||| Sbjct: 29089 ccattaacagttgctcctgtagtggcc 29063
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 1037 bits (523), Expect = 0.0 Identities = 645/687 (93%), Gaps = 3/687 (0%) Strand = Plus / Minus Query: 6 ggggaacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaa 65 |||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct: 93501 ggggaacgatgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aa 93444 Query: 66 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 125 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 93443 ctacgttttctttcaggcctttcaaccaatcaatacgacctcgtagggcagcttttgcta 93384 Query: 126 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaa 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 93383 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcaggg-aa 93325 Query: 186 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 245 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 93324 gcccttgttattcccaataagattgcccgataatagatcgattcatctaaagcccgccct 93265 Query: 246 gctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattcca 305 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 93264 gctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacattagacattcca 93205 Query: 306 tcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctatta 365 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93204 tcttcggaaacccttacttttgatgttacttggcgtataataatctctatatgtctatta 93145 Query: 366 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacga 425 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 93144 tggatctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacga 93085 Query: 426 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattctt 485 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 93084 ctttgggctatggttagctcagctccaatcaagaatccccagggaaccccaagaattctt 93025 Query: 486 ggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaatt 545 |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| Sbjct: 93024 ggtatacgttcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaatt 92965 Query: 546 gaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctc 605 ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 92964 gaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatatcactggatctc 92905 Query: 606 gatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatga 665 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 92904 gatttttcatatataaacgtaactaacctatctcctttgtaaaggatttttccataatga 92845 Query: 666 ccattaacagttgctcctgtagtggcc 692 |||| ||||||||||||| |||||||| Sbjct: 92844 ccatgaacagttgctcctatagtggcc 92818
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 1037 bits (523), Expect = 0.0 Identities = 645/687 (93%), Gaps = 3/687 (0%) Strand = Plus / Minus Query: 6 ggggaacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaa 65 |||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct: 31874 ggggaacgatgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aa 31817 Query: 66 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 125 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 31816 ctacgttttctttcaggcctttcaaccaatcaatacgacctcgtagggcagcttttgcta 31757 Query: 126 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaa 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 31756 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcaggg-aa 31698 Query: 186 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 245 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 31697 gcccttgttattcccaataagattgcccgataatagatcgattcatctaaagcccgccct 31638 Query: 246 gctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattcca 305 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 31637 gctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacattagacattcca 31578 Query: 306 tcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctatta 365 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31577 tcttcggaaacccttacttttgatgttacttggcgtataataatctctatatgtctatta 31518 Query: 366 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacga 425 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 31517 tggatctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacga 31458 Query: 426 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattctt 485 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 31457 ctttgggctatggttagctcagctccaatcaagaatccccagggaaccccaagaattctt 31398 Query: 486 ggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaatt 545 |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| Sbjct: 31397 ggtatacgttcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaatt 31338 Query: 546 gaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctc 605 ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 31337 gaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatatcactggatctc 31278 Query: 606 gatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatga 665 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 31277 gatttttcatatataaacgtaactaacctatctcctttgtaaaggatttttccataatga 31218 Query: 666 ccattaacagttgctcctgtagtggcc 692 |||| ||||||||||||| |||||||| Sbjct: 31217 ccatgaacagttgctcctatagtggcc 31191
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 1029 bits (519), Expect = 0.0 Identities = 644/687 (93%), Gaps = 3/687 (0%) Strand = Plus / Minus Query: 6 ggggaacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaa 65 |||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct: 31400 ggggaacgatgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aa 31343 Query: 66 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 125 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 31342 ctacgttttctttcagacctttcaaccaatcaatacgacctcgtagggcagcttttgcta 31283 Query: 126 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaa 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 31282 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcaggg-aa 31224 Query: 186 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 245 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 31223 gcccttgttattcccaataagattgcccgataatagatcgattcatctaaagcccgccct 31164 Query: 246 gctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattcca 305 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 31163 gctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacattagacattcca 31104 Query: 306 tcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctatta 365 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31103 tcttcggaaacccttacttttgatgttacttggcgtataataatctctatatgtctatta 31044 Query: 366 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacga 425 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 31043 tggatctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacga 30984 Query: 426 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattctt 485 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 30983 ctttgggctatggttagctcagctccaatcaagaatccccagggaaccccaagaattctt 30924 Query: 486 ggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaatt 545 |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| Sbjct: 30923 ggtatacgttcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaatt 30864 Query: 546 gaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctc 605 ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 30863 gaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatatcactggatctc 30804 Query: 606 gatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatga 665 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 30803 gatttttcatatataaacgtaactaacctatctcctttgtaaaggatttttccataatga 30744 Query: 666 ccattaacagttgctcctgtagtggcc 692 |||| ||||||||||||| |||||||| Sbjct: 30743 ccatgaacagttgctcctatagtggcc 30717
>emb|X17318.1|CLZMRPB Zea mays chloroplast trnC gene, rpoB gene, rpoC1 gene, rpoC2 gene and rps2 gene for transfer RNA-Cys, RNA polymerase subunits beta, beta-1, beta-2 and ribosomal protein S2 respectively Length = 12503 Score = 1029 bits (519), Expect = 0.0 Identities = 644/687 (93%), Gaps = 3/687 (0%) Strand = Plus / Minus Query: 6 ggggaacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaa 65 |||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct: 11314 ggggaacgatgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aa 11257 Query: 66 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 125 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 11256 ctacgttttctttcagacctttcaaccaatcaatacgacctcgtagggcagcttttgcta 11197 Query: 126 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaa 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 11196 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcaggg-aa 11138 Query: 186 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 245 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 11137 gcccttgttattcccaataagattgcccgataatagatcgattcatctaaagcccgccct 11078 Query: 246 gctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattcca 305 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 11077 gctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacattagacattcca 11018 Query: 306 tcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctatta 365 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11017 tcttcggaaacccttacttttgatgttacttggcgtataataatctctatatgtctatta 10958 Query: 366 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacga 425 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 10957 tggatctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacga 10898 Query: 426 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattctt 485 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 10897 ctttgggctatggttagctcagctccaatcaagaatccccagggaaccccaagaattctt 10838 Query: 486 ggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaatt 545 |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| Sbjct: 10837 ggtatacgttcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaatt 10778 Query: 546 gaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctc 605 ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 10777 gaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatatcactggatctc 10718 Query: 606 gatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatga 665 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 10717 gatttttcatatataaacgtaactaacctatctcctttgtaaaggatttttccataatga 10658 Query: 666 ccattaacagttgctcctgtagtggcc 692 |||| ||||||||||||| |||||||| Sbjct: 10657 ccatgaacagttgctcctatagtggcc 10631
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 1029 bits (519), Expect = 0.0 Identities = 644/687 (93%), Gaps = 3/687 (0%) Strand = Plus / Minus Query: 6 ggggaacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaa 65 |||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct: 31399 ggggaacgatgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aa 31342 Query: 66 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 125 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 31341 ctacgttttctttcagacctttcaaccaatcaatacgacctcgtagggcagcttttgcta 31282 Query: 126 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaa 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 31281 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcaggg-aa 31223 Query: 186 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 245 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 31222 gcccttgttattcccaataagattgcccgataatagatcgattcatctaaagcccgccct 31163 Query: 246 gctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattcca 305 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 31162 gctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacattagacattcca 31103 Query: 306 tcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctatta 365 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31102 tcttcggaaacccttacttttgatgttacttggcgtataataatctctatatgtctatta 31043 Query: 366 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacga 425 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 31042 tggatctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacga 30983 Query: 426 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattctt 485 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct: 30982 ctttgggctatggttagctcagctccaatcaagaatccccagggaaccccaagaattctt 30923 Query: 486 ggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaatt 545 |||||||| |||||||||||||||||||||||||||||||| || |||| |||||||||| Sbjct: 30922 ggtatacgttcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaatt 30863 Query: 546 gaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctc 605 ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct: 30862 gaacgcgcttcgaagatttgttctacttttggaagaccttgcgttatatcactggatctc 30803 Query: 606 gatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatga 665 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 30802 gatttttcatatataaacgtaactaacctatctcctttgtaaaggatttttccataatga 30743 Query: 666 ccattaacagttgctcctgtagtggcc 692 |||| ||||||||||||| |||||||| Sbjct: 30742 ccatgaacagttgctcctatagtggcc 30716
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 1015 bits (512), Expect = 0.0 Identities = 639/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 29106 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 29049 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 29048 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 28989 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 28988 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 28930 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28929 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 28870 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 28869 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 28810 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28809 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 28750 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 28749 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 28690 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 28689 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 28630 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 28629 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 28570 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 28569 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 28510 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 28509 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 28450 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 28449 gaacagttgctcctgtagtggcc 28427
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 1015 bits (512), Expect = 0.0 Identities = 639/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 29106 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 29049 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 29048 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 28989 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 28988 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 28930 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28929 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 28870 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 28869 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 28810 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28809 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 28750 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 28749 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 28690 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 28689 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 28630 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 28629 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 28570 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 28569 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 28510 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 28509 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 28450 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 28449 gaacagttgctcctgtagtggcc 28427
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 1015 bits (512), Expect = 0.0 Identities = 639/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 29064 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 29007 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 29006 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 28947 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 28946 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 28888 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28887 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 28828 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 28827 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 28768 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28767 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 28708 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 28707 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 28648 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 28647 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 28588 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 28587 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 28528 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 28527 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 28468 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 28467 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 28408 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 28407 gaacagttgctcctgtagtggcc 28385
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 1015 bits (512), Expect = 0.0 Identities = 639/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 29104 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 29047 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 29046 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 28987 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 28986 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 28928 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28927 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 28868 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 28867 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 28808 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28807 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 28748 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 28747 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 28688 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 28687 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 28628 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 28627 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 28568 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 28567 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 28508 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 28507 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 28448 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 28447 gaacagttgctcctgtagtggcc 28425
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 1015 bits (512), Expect = 0.0 Identities = 639/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Plus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 33549194 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 33549251 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 33549252 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 33549311 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 33549312 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 33549370 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 33549371 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 33549430 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 33549431 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 33549490 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33549491 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 33549550 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 33549551 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 33549610 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 33549611 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 33549670 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 33549671 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 33549730 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 33549731 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 33549790 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 33549791 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 33549850 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 33549851 gaacagttgctcctgtagtggcc 33549873
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 1015 bits (512), Expect = 0.0 Identities = 639/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Plus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 94391 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 94448 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 94449 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 94508 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 94509 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 94567 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 94568 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 94627 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 94628 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 94687 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94688 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 94747 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 94748 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 94807 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 94808 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 94867 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 94868 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 94927 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 94928 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 94987 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 94988 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 95047 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 95048 gaacagttgctcctgtagtggcc 95070
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 1007 bits (508), Expect = 0.0 Identities = 638/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 27320 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 27263 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 27262 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 27203 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 27202 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 27144 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 27143 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 27084 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 27083 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 27024 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27023 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 26964 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 26963 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 26904 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 26903 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 26844 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 26843 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 26784 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 26783 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 26724 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 26723 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 26664 Query: 670 taacagttgctcctgtagtggcc 692 ||||||||||||||||| |||| Sbjct: 26663 gaacagttgctcctgtagcggcc 26641
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 1007 bits (508), Expect = 0.0 Identities = 638/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 102253 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 102196 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 102195 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 102136 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 102135 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 102077 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 102076 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 102017 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 102016 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 101957 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 101956 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 101897 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 101896 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 101837 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 101836 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 101777 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 101776 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 101717 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 101716 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 101657 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 101656 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 101597 Query: 670 taacagttgctcctgtagtggcc 692 ||||||||||||||||| |||| Sbjct: 101596 gaacagttgctcctgtagcggcc 101574
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 1007 bits (508), Expect = 0.0 Identities = 638/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 10320928 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 10320871 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 10320870 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 10320811 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 10320810 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 10320752 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10320751 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 10320692 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 10320691 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 10320632 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10320631 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 10320572 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 10320571 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 10320512 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 10320511 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 10320452 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 10320451 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 10320392 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 10320391 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 10320332 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 10320331 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 10320272 Query: 670 taacagttgctcctgtagtggcc 692 ||||||||||||||||| |||| Sbjct: 10320271 gaacagttgctcctgtagcggcc 10320249 Score = 147 bits (74), Expect = 6e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 514 tcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatttgttccactt 573 ||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 11556804 tcctttcgagattcagcgatagtgaatcaattgaacgcgctttgaagatttgttctactt 11556863 Query: 574 ttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaactaa 631 ||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct: 11556864 ttggaagaccttgcgttatgtcactagatatcgctttctcgtatataaacgtaactaa 11556921 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 632 cctatctcccttgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 691 |||||| || ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 11557269 cctatcccctttgtaaaggttttgtccataatgaccatgaacagttgctcctgtagtggc 11557328 Query: 692 c 692 | Sbjct: 11557329 c 11557329
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 1007 bits (508), Expect = 0.0 Identities = 638/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 14369443 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 14369386 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 14369385 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 14369326 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 14369325 tcgatcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 14369267 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 14369266 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 14369207 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 14369206 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 14369147 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 14369146 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 14369087 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 14369086 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagaggtacgacttt 14369027 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 14369026 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 14368967 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 14368966 tacgctcattccaatcctcaattctcctttcgagattcggcgataatgaatcaattgaac 14368907 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 14368906 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 14368847 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 14368846 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 14368787 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 14368786 gaacagttgctcctgtagtggcc 14368764 Score = 313 bits (158), Expect = 4e-82 Identities = 188/198 (94%) Strand = Plus / Plus Query: 495 tcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgct 554 |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 14358389 tcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaacgcgct 14358448 Query: 555 tcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttca 614 || ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 14358449 tcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctttttcg 14358508 Query: 615 tatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccattaaca 674 ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| Sbjct: 14358509 tatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccatgaaca 14358568 Query: 675 gttgctcctgtagtggcc 692 |||||||||||||||||| Sbjct: 14358569 gttgctcctgtagtggcc 14358586 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 474301 ttttggattttattaaccaa 474320
>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0022A24 Length = 148347 Score = 1007 bits (508), Expect = 0.0 Identities = 638/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 91365 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 91308 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 91307 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 91248 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 |||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 91247 tcgatcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 91189 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 91188 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 91129 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 91128 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 91069 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91068 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 91009 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 91008 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagaggtacgacttt 90949 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 90948 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 90889 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct: 90888 tacgctcattccaatcctcaattctcctttcgagattcggcgataatgaatcaattgaac 90829 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 90828 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 90769 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 90768 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 90709 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 90708 gaacagttgctcctgtagtggcc 90686 Score = 313 bits (158), Expect = 4e-82 Identities = 188/198 (94%) Strand = Plus / Plus Query: 495 tcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgct 554 |||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||| Sbjct: 80311 tcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaacgcgct 80370 Query: 555 tcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttca 614 || ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 80371 tcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctttttcg 80430 Query: 615 tatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccattaaca 674 ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||| Sbjct: 80431 tatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccatgaaca 80490 Query: 675 gttgctcctgtagtggcc 692 |||||||||||||||||| Sbjct: 80491 gttgctcctgtagtggcc 80508
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 1007 bits (508), Expect = 0.0 Identities = 638/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 10326967 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 10326910 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 10326909 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 10326850 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 10326849 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 10326791 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 10326790 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 10326731 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 10326730 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 10326671 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10326670 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 10326611 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 10326610 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 10326551 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 10326550 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 10326491 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 10326490 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 10326431 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 10326430 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 10326371 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 10326370 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 10326311 Query: 670 taacagttgctcctgtagtggcc 692 ||||||||||||||||| |||| Sbjct: 10326310 gaacagttgctcctgtagcggcc 10326288 Score = 147 bits (74), Expect = 6e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 514 tcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatttgttccactt 573 ||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 11563244 tcctttcgagattcagcgatagtgaatcaattgaacgcgctttgaagatttgttctactt 11563303 Query: 574 ttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaactaa 631 ||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct: 11563304 ttggaagaccttgcgttatgtcactagatatcgctttctcgtatataaacgtaactaa 11563361 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 632 cctatctcccttgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 691 |||||| || ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 11563709 cctatcccctttgtaaaggttttgtccataatgaccatgaacagttgctcctgtagtggc 11563768 Query: 692 c 692 | Sbjct: 11563769 c 11563769
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 1007 bits (508), Expect = 0.0 Identities = 638/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 29038 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 28981 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||||| Sbjct: 28980 gttttctttcaggcctttcaaccaatcaatacgaccacgtaaggcagcttttgctaaaac 28921 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 28920 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 28862 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 28861 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 28802 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 28801 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 28742 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 28741 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 28682 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 28681 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 28622 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 28621 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 28562 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 28561 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 28502 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 28501 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 28442 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 28441 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 28382 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 28381 gaacagttgctcctgtagtggcc 28359
>emb|BX569685.1|OSJN00291 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0061C08, complete sequence Length = 145980 Score = 991 bits (500), Expect = 0.0 Identities = 636/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 112477 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 112420 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 112419 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 112360 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 112359 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 112301 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 112300 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 112241 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 112240 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 112181 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 112180 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 112121 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 ||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||| Sbjct: 112120 tctgtaccccttgggattgataaaccttttggatcttattaaccagagagatacgacttt 112061 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 112060 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 112001 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 112000 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 111941 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 111940 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 111881 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||| Sbjct: 111880 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttccccataatgaccat 111821 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 111820 gaacagttgctcctgtagtggcc 111798
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 991 bits (500), Expect = 0.0 Identities = 636/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 9258356 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 9258299 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 9258298 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 9258239 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 9258238 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 9258180 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 9258179 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 9258120 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 9258119 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 9258060 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9258059 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 9258000 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 ||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||| Sbjct: 9257999 tctgtaccccttgggattgataaaccttttggatcttattaaccagagagatacgacttt 9257940 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 9257939 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 9257880 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 9257879 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 9257820 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 9257819 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 9257760 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||| Sbjct: 9257759 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttccccataatgaccat 9257700 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 9257699 gaacagttgctcctgtagtggcc 9257677 Score = 991 bits (500), Expect = 0.0 Identities = 636/683 (93%), Gaps = 3/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 9154451 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 9154394 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 9154393 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 9154334 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 9154333 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 9154275 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 9154274 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 9154215 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 9154214 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 9154155 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9154154 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 9154095 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 ||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||| Sbjct: 9154094 tctgtaccccttgggattgataaaccttttggatcttattaaccagagagatacgacttt 9154035 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 9154034 gggctatggttaactcagctccaatcaagaatccccaaggacccccaagaattcttggta 9153975 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 9153974 tacgctcattccaatcctcaattctcctttcgagattcggcgatagtgaatcaattgaac 9153915 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 9153914 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 9153855 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||| Sbjct: 9153854 tttcgtatataaacgtaactaacctatcccctttgtaaaggatttccccataatgaccat 9153795 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 9153794 gaacagttgctcctgtagtggcc 9153772 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 29603158 ttttggattttattaaccaa 29603177
>gb|AC136521.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0034M22, complete sequence Length = 149435 Score = 989 bits (499), Expect = 0.0 Identities = 637/683 (93%), Gaps = 4/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 119872 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccc-ag-aactac 119816 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 119815 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 119756 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 119755 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 119697 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 119696 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 119637 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 119636 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 119577 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119576 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 119517 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 119516 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 119457 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| || |||||||||||||||||||||||| |||||||||||||||||| Sbjct: 119456 gggctatggttaacttagctccaatcaagaatccccaaggacccccaagaattcttggta 119397 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 119396 tacgctcattccaatcctcaattctcctttcgagatttggcgatagtgaatcaattgaac 119337 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 119336 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 119277 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 119276 gttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 119217 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 119216 gaacagttgctcctgtagtggcc 119194 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 92293 ttttggattttattaaccaa 92312
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 989 bits (499), Expect = 0.0 Identities = 637/683 (93%), Gaps = 4/683 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 12822413 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccc-ag-aactac 12822357 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 12822356 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 12822297 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 12822296 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 12822238 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 12822237 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 12822178 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 12822177 gctctgctcgcaatagtccaattaattccccaggtgaaaaaacattagacattccatctt 12822118 Query: 310 cggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgga 369 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12822117 cggaaacccgcacttttgatgttacttggcgtataataatctctatatgtctattatgga 12822058 Query: 370 tctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgacttt 429 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 12822057 tctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacgacttt 12821998 Query: 430 gggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggta 489 |||||||||||| || |||||||||||||||||||||||| |||||||||||||||||| Sbjct: 12821997 gggctatggttaacttagctccaatcaagaatccccaaggacccccaagaattcttggta 12821938 Query: 490 tacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaac 549 ||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| Sbjct: 12821937 tacgctcattccaatcctcaattctcctttcgagatttggcgatagtgaatcaattgaac 12821878 Query: 550 gcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatt 609 ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct: 12821877 gcgcttcgaagatttgttctacttttggaagaccttgcgttatgtcactagatctcgctt 12821818 Query: 610 tttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct: 12821817 gttcgtatataaacgtaactaacctatcccctttgtaaaggatttctccataatgaccat 12821758 Query: 670 taacagttgctcctgtagtggcc 692 |||||||||||||||||||||| Sbjct: 12821757 gaacagttgctcctgtagtggcc 12821735 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 12794834 ttttggattttattaaccaa 12794853
>gb|DQ069545.1| Typha latifolia RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4161 Score = 769 bits (388), Expect = 0.0 Identities = 609/684 (89%), Gaps = 3/684 (0%) Strand = Plus / Minus Query: 9 gaacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaacta 68 ||||||||||||||||||||| ||||| || |||||||||||||| || ||| | Sbjct: 3986 gaacgatgcacaaatttttgg-aatccagtaccaacaggtataatcccccctag-aacaa 3929 Query: 69 cgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaa 128 |||| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||| Sbjct: 3928 cgttctctttcaggcctttcaaccaatcaatacgacctcgtaaagcagcttttgctaaaa 3869 Query: 129 ctcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagcc 188 |||||||||||||||||||||||||||| |||||||||||||| |||||||| | | || Sbjct: 3868 ctcgagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagag-atgct 3810 Query: 189 cttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgct 248 |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||| Sbjct: 3809 cttgttattcccaataagattgcccgataacagatcgattcattcaaagcgcgccctgcg 3750 Query: 249 cgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatct 308 |||||||||||||| | |||||||||||| ||||| ||||||||||||||||| Sbjct: 3749 cgttccgctcgcaacaatccgattaattctccaggtgaaaaaacattagacattccatct 3690 Query: 309 tcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatgg 368 || |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct: 3689 tctgaaaccaatacttttgatgttacttgacgtacaataatctctatatgtctattatgg 3630 Query: 369 atctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactt 428 ||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 3629 atctgtaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactt 3570 Query: 429 tgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggt 488 || ||||||||||||||||||||||| ||||| ||||| |||| |||||||||||||||| Sbjct: 3569 tgagctatggttagctcagctccaattaagaacccccaggggatcccaagaattcttggt 3510 Query: 489 atacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaa 548 ||||| || |||||| | |||| |||||||||||| || |||| ||||||||| ||| Sbjct: 3509 atacgttcgttccaaccttcaactctcctttcgaggttcatcgatattgaatcaatcgaa 3450 Query: 549 cgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgat 608 ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3449 cgcacttctaagatttgttccacttttggaagaccttgcgttatgtcaccagatctcgat 3390 Query: 609 ttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacca 668 |||||||||||||| |||||||| ||||||| | |||||||||||| |||||||||||| Sbjct: 3389 ttttcatatataaatgtaactaatgtatctccttcgtaaaggatttccccataatgacca 3330 Query: 669 ttaacagttgctcctgtagtggcc 692 | |||||||||||||| ||||||| Sbjct: 3329 tgaacagttgctcctggagtggcc 3306
>emb|X52270.1|CHZMATPI Maize chloroplast 3'part of rpoC2 gene, rps2 gene, atpI gene and 5'part of atpH gene Length = 3463 Score = 710 bits (358), Expect = 0.0 Identities = 447/478 (93%), Gaps = 3/478 (0%) Strand = Plus / Minus Query: 6 ggggaacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaa 65 |||||||||||||||||||||||| |||||||| |||||||||||||| || || Sbjct: 475 ggggaacgatgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aa 418 Query: 66 ctacgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgcta 125 ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 417 ctacgttttctttcagacctttcaaccaatcaatacgacctcgtagggcagcttttgcta 358 Query: 126 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaa 185 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 357 aaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcaggg-aa 299 Query: 186 gcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccct 245 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 298 gcccttgttattcccaataagattgcccgataatagatcgattcatctaaagcccgccct 239 Query: 246 gctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattcca 305 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 238 gctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacattagacattcca 179 Query: 306 tcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctatta 365 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 tcttcggaaacccttacttttgatgttacttggcgtataataatctctatatgtctatta 119 Query: 366 tggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacga 425 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 118 tggatctgtaccccttgggatcgataaaccttttggatcttattaaccaaagagatacga 59 Query: 426 ctttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattc 483 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct: 58 ctttgggctatggttagctcagctccaatcaagaatccccagggaaccccaagaattc 1
>gb|DQ069546.1| Yucca schidigera RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4152 Score = 638 bits (322), Expect = e-180 Identities = 546/622 (87%), Gaps = 1/622 (0%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||| Sbjct: 3932 ttttctttcaaacccttcaaccaatcaatacgaccccgtagagcagcttttgctaaaact 3873 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccct 190 | |||||||||||||||||||||||| |||||||||||||| |||||||| | | ||||| Sbjct: 3872 ctagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagag-atgccct 3814 Query: 191 tgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcg 250 |||||||||||||| |||||||||||| |||||| ||| || ||||| ||||||||||| Sbjct: 3813 cgttattcccaataaaattgcccgataacagatcgcttcgtctaaagcacgccctgctcg 3754 Query: 251 ttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttc 310 |||||||||||| | |||||||||||| ||||| |||||||||||||||||| Sbjct: 3753 ttccgctcgcaacaatccgattaattctccaggtaaaaaaagattagacattccatcttc 3694 Query: 311 ggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatggat 370 |||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct: 3693 tgaaaccaacacttttgatgttacttgccgtacaataatctctatatgtctattatggat 3634 Query: 371 ctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttg 430 ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 3633 ctgtaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgactttg 3574 Query: 431 ggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtat 490 |||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||| Sbjct: 3573 ggctatggttagctcagctccaattaagaatccccaaggaattccaagaattcttggtat 3514 Query: 491 acgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacg 550 |||||| |||||| | |||| ||||||||| || || |||| |||| |||| || || Sbjct: 3513 acgctcgttccaaccttcaactctcctttcaaggttcattgatattgaaccaatcgagcg 3454 Query: 551 cgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgattt 610 |||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 3453 aacttctaagatttgttccacttttggaagaccttgcgttatgtcaccagatcgggattt 3394 Query: 611 ttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccatt 670 |||||||||||| |||||||| ||||||| | ||||| ||||||||||||| |||| Sbjct: 3393 ttcatatataaatgtaactaatgtatctccttcaaaaagggtttctccataatgtccatg 3334 Query: 671 aacagttgctcctgtagtggcc 692 |||||| || |||| ||||||| Sbjct: 3333 aacagtcgcccctggagtggcc 3312
>gb|AY916449.1| Phalaenopsis aphrodite subsp. formosana plastid, complete genome Length = 148964 Score = 615 bits (310), Expect = e-173 Identities = 543/622 (87%), Gaps = 1/622 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct: 17336 acgttttctttcaggcctttcaaccaatcaatacgacctcgtagagcagcttttgctaaa 17395 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||||||||| |||||||||||||| |||||||| | | | Sbjct: 17396 actcgagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcagag-atga 17454 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 | | ||||||||||||||||||||||||||| |||| ||||| ||||| | |||||||| Sbjct: 17455 cttcgttattcccaataagattgcccgataacagattgattcggccaaaacgcgccctgc 17514 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || ||||||||||| |||||||||||||||| Sbjct: 17515 tcgttctgctcgcaacaatccaataaattccccaggtaaaaaaacattagacattccatc 17574 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 |||||||||| ||| ||||||||||||| |||| ||||||||||| |||||||||||| Sbjct: 17575 ttcggaaaccaaaactcttgatgttacttgacgtacaataatctctagatgtctattatg 17634 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 |||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||| Sbjct: 17635 gatctgtaccccctgggatcgataaaccttttgtatcttattaaccaaagagatacgact 17694 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||| | Sbjct: 17695 ttgggctatggttagttcagctccaatcaagaatccccaggggatcccaagaatccttcg 17754 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| || | |||| | |||| ||| |||||||| || |||| |||||||||||| Sbjct: 17755 gatacgttcgtcccaaccttcaactcttctttcgaggttcatcgatattgaatcaattga 17814 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 ||| |||| ||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct: 17815 acgaacttctaagatttgttctacttttggaagaccttgcgttatgtcaccagatctcga 17874 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 |||||||||||||| |||| ||| ||||||| | |||| | |||| ||||||||||| Sbjct: 17875 cttttcatatataaatgtaattaatgtatctccttcataaaaggtttccccataatgacc 17934 Query: 668 attaacagttgctcctgtagtg 689 || ||||||||||||| |||| Sbjct: 17935 atggacagttgctcctggagtg 17956
>emb|AJ222797.1|CHMSINTER Miscanthus sinensis chloroplast DNA rpoC2-rps2 intergenic spacer Length = 960 Score = 599 bits (302), Expect = e-168 Identities = 436/478 (91%), Gaps = 6/478 (1%) Strand = Plus / Minus Query: 6 ggggaacgatgca-caaatttttggnaatccggtnccaacaggtataatnnnnnnnagna 64 ||||||||||||| ||||||||||| |||||||| |||||||||||||| || | Sbjct: 478 ggggaacgatgcagcaaatttttgg-aatccggtaccaacaggtataatcccccccag-a 421 Query: 65 actacg-ttttctttcaagcctttcaacc-aatcaatgcgacctcgtagggcagcttttg 122 |||||| |||||||||| |||| |||||| ||||||| ||||||||||||||||||||| Sbjct: 420 actacggttttctttcaggcctgtcaacccaatcaatacgacctcgtagggcagcttttc 361 Query: 123 ctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcaggg 182 | | |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 360 tgagagctcgagcagtttcttgaacacttgcttcagatatgacactttgggtattcaggg 301 Query: 183 naagcccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgc 242 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 300 -aagcccttgttattcccaataagattgcccgataatagatcgattcatctaaagcccgc 242 Query: 243 cctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacatt 302 |||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 241 cctgctcgttccgctcgcaatagtcctattaattccccaggtaaaaaaacattagacatt 182 Query: 303 ccatcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtcta 362 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ccatcttcggaaacccttacttttgatgttacttggcgtataataatctctatatgtcta 122 Query: 363 ttatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaata 422 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| Sbjct: 121 ttatggatctgtaccccttgggatcgataaaccttttggatcttattaaccaaggagata 62 Query: 423 cgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaa 480 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 61 cgactttgggctatggttagctcagctccaatcaagaatccccagggaaccccaagaa 4
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 541 bits (273), Expect = e-150 Identities = 536/625 (85%), Gaps = 1/625 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| |||||||||||||||||| ||||||||||| || |||||||||||| Sbjct: 17304 acgttctctttcaggcctttcaaccaatcaatacgacctcgtagagcggcttttgctaaa 17363 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||| | | || Sbjct: 17364 actcgagcggtttcttgaaaactcgcttcggatatgaaactttgagtattcaaag-atgc 17422 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||| ||||||||||||||||| || || ||| |||||| ||| |||||||| ||||| | Sbjct: 17423 cctcgttattcccaataagatagctcggtaacagatcgcttcttccaaagcacgcccggt 17482 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||||||||| | |||||||| ||| || || |||||||||||||||| Sbjct: 17483 tcgttccgctcgcaacaatccgattagttctccgggtgaaaaaacattagacattccatc 17542 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||| ||||||||| ||| |||| ||||||||||||||| |||||||| Sbjct: 17543 ttctgaaaccaacactcttgatgttatttgacgtacaataatctctatatgcctattatg 17602 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 |||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct: 17603 gatctgcaccccctgggaccgataaaccttttggatcttattaaccaaagaaatacgact 17662 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||||||||||||||| |||||||||||||||||||| | |||||||||| ||| Sbjct: 17663 ttgcgctatggttagctcagcaccaatcaagaatccccaaggaatcccaagaatttttgt 17722 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||||| || |||||| | |||| ||| |||| || || |||| ||||||||| || Sbjct: 17723 tatacgttcgttccaaccttcaaccctcttttctaggttcatcgatattgaatcaatcga 17782 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 ||||||||| || | ||||||||||||||||||||||| ||||| |||| |||||||| Sbjct: 17783 acgcgcttctaacacctgttccacttttggaagaccttgtgttatatcacccgatctcga 17842 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | |||||||||||||||| |||| || Sbjct: 17843 tttttcatatataaatgtaactaatgtatctccttcgtaaaggatttctccacaatggcc 17902 Query: 668 attaacagttgctcctgtagtggcc 692 || ||| |||||||| | ||||||| Sbjct: 17903 atgaacggttgctcccggagtggcc 17927
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 513 bits (259), Expect = e-142 Identities = 525/615 (85%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||||| ||||||||||||||| || ||||| || || ||||||||||||||| Sbjct: 17520 acgttttctttcaggcctttcaaccaatcgatacgaccccggagagcagcttttgctaaa 17579 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||||||||||||||| |||||||| || ||||| | | || Sbjct: 17580 actcgagcagtttcttgaaaacttgcttcagatataaaactttgagtgttcagag-atgc 17638 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 || |||||||||||||| | || |||||| | |||| ||| || ||||| ||||| | Sbjct: 17639 tctcgttattcccaataaaacggctcgataacaaatcgcttcttctaaagcacgccccgt 17698 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||||||||||| ||| || | |||||| || |||||||||||||||| Sbjct: 17699 tcgttccgctcgcaataatccaatcagttccccgggtaaaaaaacattagacattccatc 17758 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17759 ttctgaaaccaatacttttgatgttatttgacgtacaataatttctatatgcctattatg 17818 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 |||||||||||| || |||||||||||||||||||| |||||||||||||| | |||||| Sbjct: 17819 gatctgtaccccctgagatcgataaaccttttggatcttattaaccaaagagagacgact 17878 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||||||||| ||||||| |||||||||||| | ||||||||||||| Sbjct: 17879 ttgcactatagttagctcagcaccaatcacgaatccccaaggaattccaagaattcttgt 17938 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| || |||||| ||||||||||| |||| || || |||| ||||||||| || Sbjct: 17939 tatacattcgttccaaccctcaattctcttttctaggttcatcgatattgaatcaatcga 17998 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||||||||||||||||||| |||||||| |||| ||||||||| Sbjct: 17999 acgcacttctaacacttgttccacttttggaagaccctgcgttatatcaccagatctcga 18058 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| ||||||||| ||||||| | ||||||| ||||||||||||| || Sbjct: 18059 tttttcatatataaatgtaactaacgtatctccttcgtaaagggtttctccataatgccc 18118 Query: 668 attaacagttgctcc 682 || ||||||||||| Sbjct: 18119 atggacagttgctcc 18133
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 502 bits (253), Expect = e-139 Identities = 531/625 (84%), Gaps = 1/625 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||| | ||||||||||||||| || || || || || |||||||| |||||| Sbjct: 18209 acgttctcttttaggcctttcaaccaatcgatacggccccggagagcagctttggctaaa 18268 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| |||||||||||||||||||| ||||||| | | || Sbjct: 18269 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattcaaag-atgc 18327 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||| ||| || || ||| |||||||||| |||||||| ||||| | Sbjct: 18328 ccttgttattcccaataggatggcgcggtaacagatcgattcttccaaagcgcgccccgt 18387 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||| |||||||||| | ||| |||| ||| ||||| |||||||||||||||| Sbjct: 18388 tcgcgccgctcgcaacaatccaattagttctccaggtaaaaaaacattagacattccatc 18447 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 || |||||| || |||||||||| |||||||| |||||| ||||| || |||||||| Sbjct: 18448 ctctgaaaccaacacctttgatgttatttggcgtacaataatttctatgtgcctattatg 18507 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||| || ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 18508 gatttgcaccccctgggatcgataaaccttttggatcttattaaccaaagatatacgact 18567 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||| ||||| |||||||||||||||||||| | ||||||||| || Sbjct: 18568 ttgcactatagttagttcagccccaatcaagaatccccaaggaattccaagaattttttt 18627 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||| |||| |||||| |||||||||| |||| || || |||| |||||||||||| Sbjct: 18628 tatatgctcgttccaaccctcaattcttttttctaggttcatcgatattgaatcaattga 18687 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||||||||||||||||||| |||||||| |||| |||||||| Sbjct: 18688 acgcacttctaacacttgttccacttttggaagaccctgcgttatatcaccggatctcga 18747 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | |||||||||||||||||||||||| Sbjct: 18748 tttttcatatataaatgtaactaatgtatctccttcgtaaaggatttctccataatgacc 18807 Query: 668 attaacagttgctcctgtagtggcc 692 || |||||||||||||| ||||||| Sbjct: 18808 atgaacagttgctcctggagtggcc 18832
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 486 bits (245), Expect = e-134 Identities = 523/617 (84%), Gaps = 1/617 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||| | ||||||||||||||||| || || ||||| || |||||||||||| Sbjct: 15532 acgttttcttttagtcctttcaaccaatcaatacggccccgtagagctgcttttgctaaa 15591 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| ||||| || || |||||||| |||||||| | | || Sbjct: 15592 actcgagcagtttcttgaaaactcgcttcggagataaaactttgagtattcagag-atgc 15650 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 || ||||||||||||||| | || || ||| | |||| ||| |||||||| || || | Sbjct: 15651 tctcgttattcccaataaggtagcgcggtaacatatcgcttcttccaaagcgcgtcccgt 15710 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||| || || | ||| |||| ||| || ||| |||||||||||||||| Sbjct: 15711 tcgttccgcccgaaacaatccaattagttctccgggcaaaaaaacattagacattccatc 15770 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| ||||||||||||||||| Sbjct: 15771 ttctgaaaccaagacttttgatgttatttgacgtacaataatttctatatgtctattatg 15830 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 |||||| |||||||| |||||||||||||||||||| || |||||||||||||||||||| Sbjct: 15831 gatctgcaccccttgtgatcgataaaccttttggatcttgttaaccaaagaaatacgact 15890 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct: 15891 ttgcgctatagttagctcagccccaatcaagaatccccaaggacttccaagaattcttgt 15950 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||||| || |||||| ||||| ||| |||| |||||| ||||| ||||||||| || Sbjct: 15951 tatacgttcgttccaactatcaatcctcttttctagattgatggatattgaatcaatcga 16010 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 ||| |||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct: 16011 acgaacttctaagacttgttccacttttggaagaccttgcgttatgtcaccagacctcga 16070 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| |||| || | |||| |||||||||||||||||| Sbjct: 16071 tttttcatatataaatgtaactaatgtatccccttcataaatgatttctccataatgacc 16130 Query: 668 attaacagttgctcctg 684 || || |||||||||| Sbjct: 16131 atgaagtgttgctcctg 16147
>gb|AY521596.1| Cucumis sativus isolate GY-14, chloroplast sequence Length = 16653 Score = 470 bits (237), Expect = e-129 Identities = 527/625 (84%), Gaps = 1/625 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| |||||||| ||| |||||||||| || |||||||| ||||| |||||||||||| Sbjct: 6993 acgttctctttcaaacctctcaaccaatcgatacgacctcggagggcggcttttgctaaa 7052 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||||||||| |||||||||||||| ||||| || | | || Sbjct: 7053 actcgagcagtttcttgaaaacttgcttccgatatgaaactttgagtatttagag-atgc 7111 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 | |||||||||||||| | || || ||| |||||| ||| |||||||| ||||||| Sbjct: 7112 tttcgttattcccaataatacggctcggtaacagatcgcttcttccaaagcacgccctgt 7171 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||||||||| || | || || | ||| ||||| |||||||||||||||| Sbjct: 7172 tcgttccgctcgtaacaacccaatgagttctccaggtgaaaaaacattagacattccatc 7231 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| || |||||||||||||| Sbjct: 7232 ttctgaaaccaacacttttgatgttatttgacgtacaataatttcgatatgtctattatg 7291 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 7292 gatctccaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgact 7351 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||| ||||| |||||||| ||||||||||| | ||||||||||||| Sbjct: 7352 ttgcactatcgttagttcagcaccaatcaaaaatccccaaggaattccaagaattcttgt 7411 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||||||| |||||| ||||||||||| |||| || | |||| ||||||||| || Sbjct: 7412 tatacgctcgttccaaccctcaattctcttttctaggctcatcgatattgaatcaatcga 7471 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | |||||| |||||||||||||| |||||||| |||| ||||| || Sbjct: 7472 acgcacttctaatacttgttcgacttttggaagaccctgcgttatatcaccagatcgtga 7531 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| | Sbjct: 7532 tttttcatatataaatgtaactaaagtatctccttcgtaaaggatttcgccataatggcg 7591 Query: 668 attaacagttgctcctgtagtggcc 692 || |||||||||||||| ||||||| Sbjct: 7592 atgaacagttgctcctgaagtggcc 7616
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 470 bits (237), Expect = e-129 Identities = 527/625 (84%), Gaps = 1/625 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| |||||||| ||| |||||||||| || |||||||| ||||| |||||||||||| Sbjct: 17594 acgttctctttcaaacctctcaaccaatcgatacgacctcggagggcggcttttgctaaa 17653 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||||||||| |||||||||||||| ||||| || | | || Sbjct: 17654 actcgagcagtttcttgaaaacttgcttccgatatgaaactttgagtatttagag-atgc 17712 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 | |||||||||||||| | || || ||| |||||| ||| |||||||| ||||||| Sbjct: 17713 tttcgttattcccaataatacggctcggtaacagatcgcttcttccaaagcacgccctgt 17772 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||||||||| || | || || | ||| ||||| |||||||||||||||| Sbjct: 17773 tcgttccgctcgtaacaacccaatgagttctccaggtgaaaaaacattagacattccatc 17832 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| || |||||||||||||| Sbjct: 17833 ttctgaaaccaacacttttgatgttatttgacgtacaataatttcgatatgtctattatg 17892 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 17893 gatctccaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgact 17952 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||| ||||| |||||||| ||||||||||| | ||||||||||||| Sbjct: 17953 ttgcactatcgttagttcagcaccaatcaaaaatccccaaggaattccaagaattcttgt 18012 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||||||| |||||| ||||||||||| |||| || | |||| ||||||||| || Sbjct: 18013 tatacgctcgttccaaccctcaattctcttttctaggctcatcgatattgaatcaatcga 18072 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | |||||| |||||||||||||| |||||||| |||| ||||| || Sbjct: 18073 acgcacttctaatacttgttcgacttttggaagaccctgcgttatatcaccagatcgtga 18132 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| | Sbjct: 18133 tttttcatatataaatgtaactaaagtatctccttcgtaaaggatttcgccataatggcg 18192 Query: 668 attaacagttgctcctgtagtggcc 692 || |||||||||||||| ||||||| Sbjct: 18193 atgaacagttgctcctgaagtggcc 18217
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 470 bits (237), Expect = e-129 Identities = 527/625 (84%), Gaps = 1/625 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| |||||||| ||| |||||||||| || |||||||| ||||| |||||||||||| Sbjct: 17583 acgttctctttcaaacctctcaaccaatcgatacgacctcggagggcggcttttgctaaa 17642 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||||||||| |||||||||||||| ||||| || | | || Sbjct: 17643 actcgagcagtttcttgaaaacttgcttccgatatgaaactttgagtatttagag-atgc 17701 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 | |||||||||||||| | || || ||| |||||| ||| |||||||| ||||||| Sbjct: 17702 tttcgttattcccaataatacggctcggtaacagatcgcttcttccaaagcacgccctgt 17761 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||||||||| || | || || | ||| ||||| |||||||||||||||| Sbjct: 17762 tcgttccgctcgtaacaacccaatgagttctccaggtgaaaaaacattagacattccatc 17821 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| || |||||||||||||| Sbjct: 17822 ttctgaaaccaacacttttgatgttatttgacgtacaataatttcgatatgtctattatg 17881 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 17882 gatctccaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgact 17941 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||| ||||| |||||||| ||||||||||| | ||||||||||||| Sbjct: 17942 ttgcactatcgttagttcagcaccaatcaaaaatccccaaggaattccaagaattcttgt 18001 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||||||| |||||| ||||||||||| |||| || | |||| ||||||||| || Sbjct: 18002 tatacgctcgttccaaccctcaattctcttttctaggctcatcgatattgaatcaatcga 18061 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | |||||| |||||||||||||| |||||||| |||| ||||| || Sbjct: 18062 acgcacttctaatacttgttcgacttttggaagaccctgcgttatatcaccagatcgtga 18121 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| | Sbjct: 18122 tttttcatatataaatgtaactaaagtatctccttcgtaaaggatttcgccataatggcg 18181 Query: 668 attaacagttgctcctgtagtggcc 692 || |||||||||||||| ||||||| Sbjct: 18182 atgaacagttgctcctgaagtggcc 18206
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 466 bits (235), Expect = e-128 Identities = 519/615 (84%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||| | ||||||||||||||| || ||||| | || ||||||||||||||| Sbjct: 18389 acgttttcttttaggcctttcaaccaatcgatacgaccccacagagcagcttttgctaaa 18448 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| || || |||||||||||||| |||||||| | | || Sbjct: 18449 actcgagcagtttcttgaaaactcgcctcggatatgaaactttgagtattcagag-acgc 18507 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 || |||||||||||||| || | || ||| | || | ||| || ||||| ||||| | Sbjct: 18508 tctcgttattcccaataaaatggttcggtaacaaatagcttcttcgaaagcacgccccgt 18567 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||||||||| | ||| |||| ||| || ||| |||||||||||||||| Sbjct: 18568 tcgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacattccatc 18627 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 18628 ttctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatg 18687 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 |||||| ||||| ||||||||||||||||||||||| |||||||| ||||| |||||||| Sbjct: 18688 gatctgaaccccctgggatcgataaaccttttggatcttattaactaaagagatacgact 18747 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| ||||| |||||||||||||| | ||||||||||||| Sbjct: 18748 ttgcgctatagttagctcagcaccaatgaagaatccccaaggaattccaagaattcttgt 18807 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||| |||| |||||| |||||| |||| |||| || || |||| |||||||| || Sbjct: 18808 tatatgctcgttccaaccctcaactctcttttctaggttcatcgatatggaatcaatcga 18867 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||||||||||||||||||| |||||||| |||| |||||| || Sbjct: 18868 acgcacttctaacacttgttccacttttggaagaccctgcgttatatcaccagatcttga 18927 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| || Sbjct: 18928 tttttcatatataaatgtaactaatgtatctccttcgtaaaggatttccccataatgtcc 18987 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 18988 atgaacagttgctcc 19002
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 462 bits (233), Expect = e-127 Identities = 520/617 (84%), Gaps = 1/617 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 18077 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagctgcttttgctaaa 18136 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| | | || Sbjct: 18137 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcagag-atgc 18195 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 |||||||||||||||||| || | ||| |||||| ||| |||||||| || || Sbjct: 18196 ttttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgacccat 18255 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||||||||| | ||| || ||||| || || |||||||||| ||||| Sbjct: 18256 tcgttccgctcgcaacaatccaataaattctccgggtaaaaaaacattagacatcccatc 18315 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 18316 ttctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatg 18375 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 18376 gatctgcaccccctgggatcgataaaccttttggatcttattaaccaaagaaatacgact 18435 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||||||||| |||||||||||||||||||| | |||||| |||||| Sbjct: 18436 ttgcactatagttagctcagccccaatcaagaatccccaaggaattccaagatttcttgt 18495 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| || ||||| |||||| ||| |||||||||| |||| ||||||||| || Sbjct: 18496 tatacattcgttccagccctcaaccctcttttcgagattcatcgatattgaatcaatcga 18555 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||| |||||||||||||| |||||||| |||| ||||| ||| Sbjct: 18556 acgcacttctaacacctgttcgacttttggaagaccctgcgttatatcaccagatcgcga 18615 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| || Sbjct: 18616 tttttcatatataaatgtaactaatgtatctccttcgtaaaggatttccccataatggcc 18675 Query: 668 attaacagttgctcctg 684 || |||||||||||||| Sbjct: 18676 atgaacagttgctcctg 18692
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 450 bits (227), Expect = e-123 Identities = 517/615 (84%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 16981 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17040 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||||||||||||||||||||||||||||||||||||||||||| ||||| || | | || Sbjct: 17041 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagag-atgc 17099 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| Sbjct: 17100 tcttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccat 17159 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || | ||| || || |||||||||||||||| Sbjct: 17160 tcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatc 17219 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||| | ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17220 ttctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatg 17279 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || || Sbjct: 17280 aatctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggct 17339 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| | |||||||||||||| Sbjct: 17340 ttgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgg 17399 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| |||||| ||| |||| ||||| ||||| ||||||||| || Sbjct: 17400 tatacatttgttccaaccctcaaccctcttttctagattcatggatattgaatcaatcga 17459 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| |||| ||||| |||||||||||||| || ||||| |||| ||||||||| Sbjct: 17460 acgcacttctaagacctgttctacttttggaagaccctgtgttatatcaccagatctcga 17519 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| || Sbjct: 17520 tttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcc 17579 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 17580 atgaacagttgctcc 17594
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 450 bits (227), Expect = e-123 Identities = 517/615 (84%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 16978 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17037 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||||||||||||||||||||||||||||||||||||||||||| ||||| || | | || Sbjct: 17038 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagag-atgc 17096 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| Sbjct: 17097 tcttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccat 17156 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || | ||| || || |||||||||||||||| Sbjct: 17157 tcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatc 17216 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||| | ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17217 ttctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatg 17276 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || || Sbjct: 17277 aatctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggct 17336 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| | |||||||||||||| Sbjct: 17337 ttgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgg 17396 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| |||||| ||| |||| ||||| ||||| ||||||||| || Sbjct: 17397 tatacatttgttccaaccctcaaccctcttttctagattcatggatattgaatcaatcga 17456 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| |||| ||||| |||||||||||||| || ||||| |||| ||||||||| Sbjct: 17457 acgcacttctaagacctgttctacttttggaagaccctgtgttatatcaccagatctcga 17516 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| || Sbjct: 17517 tttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcc 17576 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 17577 atgaacagttgctcc 17591
>gb|DQ069541.1| Acorus americanus RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4158 Score = 446 bits (225), Expect = e-122 Identities = 524/625 (83%), Gaps = 1/625 (0%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||||| ||||| ||||| || |||||||| ||| Sbjct: 3938 acgttctctttcaggcctttcaaccaatcaacacgaccccgtagagccgcttttgccaaa 3879 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| | | || Sbjct: 3878 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaag-acgc 3820 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||||||| |||||| |||||| ||| |||||||| || |||| Sbjct: 3819 tcttgttattcccaataagattgctcgataacagatcgcttcttccaaagcgcgacctgt 3760 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||| ||||| | |||||| | ||| || || |||||||||||||||| Sbjct: 3759 tcgttccgcccgcaacaatccgataagttctcccggtgaaaaaacattagacattccatc 3700 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| ||||||||||||||| ||||||| Sbjct: 3699 ttctgaaaccaacacttttgatgttatttgacgtacaataatctctatatgcttattatg 3640 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| || ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 3639 aatctgcaccccctgagatcgataaactttttggatcttattaaccaaagagatacgact 3580 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||||||||| ||| || || |||||||||||||| || | ||||||||| ||| Sbjct: 3579 ttgcgctatggttaactcggcgccgatcaagaatccccagggaattccaagaatttttgt 3520 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||| | || |||||| | |||| || ||||||| || | |||| ||||||||||| Sbjct: 3519 tatatgttcgttccaaccttcaacccttttttcgaggttcgtcgatatggaatcaattga 3460 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 ||| |||| || | |||||| |||||||||||||| |||||||| |||| |||||| || Sbjct: 3459 acgtacttctaacacttgttctacttttggaagaccctgcgttatatcaccagatcttga 3400 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||| ||| ||||||| |||||| |||||||||||||| || Sbjct: 3399 tttttcatatataaatgtaattaatgtatctcctccgtaaagtatttctccataatggcc 3340 Query: 668 attaacagttgctcctgtagtggcc 692 || |||||||||||||| ||||||| Sbjct: 3339 atgaacagttgctcctggagtggcc 3315
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 446 bits (225), Expect = e-122 Identities = 524/625 (83%), Gaps = 1/625 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||||| ||||| ||||| || |||||||| ||| Sbjct: 16891 acgttctctttcaggcctttcaaccaatcaacacgaccccgtagagccgcttttgccaaa 16950 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| | | || Sbjct: 16951 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaag-acgc 17009 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||||||| |||||| |||||| ||| |||||||| || |||| Sbjct: 17010 tcttgttattcccaataagattgctcgataacagatcgcttcttccaaagcgcgacctgt 17069 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||| ||||| | |||||| | ||| || || |||||||||||||||| Sbjct: 17070 tcgttccgcccgcaacaatccgataagttctcccggtgaaaaaacattagacattccatc 17129 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| ||||||||||||||| ||||||| Sbjct: 17130 ttctgaaaccaacacttttgatgttatttgacgtacaataatctctatatgcttattatg 17189 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| || ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 17190 aatctgcaccccctgagatcgataaactttttggatcttattaaccaaagagatacgact 17249 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||||||||| ||| || || |||||||||||||| || | ||||||||| ||| Sbjct: 17250 ttgcgctatggttaactcggcgccgatcaagaatccccagggaattccaagaatttttgt 17309 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||| | || |||||| | |||| || ||||||| || | |||| ||||||||||| Sbjct: 17310 tatatgttcgttccaaccttcaacccttttttcgaggttcgtcgatatggaatcaattga 17369 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 ||| |||| || | |||||| |||||||||||||| |||||||| |||| |||||| || Sbjct: 17370 acgtacttctaacacttgttctacttttggaagaccctgcgttatatcaccagatcttga 17429 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||| ||| ||||||| |||||| |||||||||||||| || Sbjct: 17430 tttttcatatataaatgtaattaatgtatctcctccgtaaagtatttctccataatggcc 17489 Query: 668 attaacagttgctcctgtagtggcc 692 || |||||||||||||| ||||||| Sbjct: 17490 atgaacagttgctcctggagtggcc 17514
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 442 bits (223), Expect = e-121 Identities = 516/615 (83%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17161 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17220 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || | | || Sbjct: 17221 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattgagag-atgc 17279 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| Sbjct: 17280 tcttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccat 17339 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || | ||| || || |||||||||||||||| Sbjct: 17340 tcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatc 17399 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| ||||||||||||||||| Sbjct: 17400 ttctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgtctattatg 17459 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || || Sbjct: 17460 aatctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggct 17519 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| Sbjct: 17520 ttgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgt 17579 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| |||||| ||| |||| ||||| ||||| ||||||||| || Sbjct: 17580 tatacatttgttccaaccctcaaccctcttttctagattcatggatattgaatcaatcga 17639 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||| |||||||||||||| || ||||| |||| ||||||||| Sbjct: 17640 acgcacttctaacacctgttctacttttggaagaccctgtgttatatcaccagatctcga 17699 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| || Sbjct: 17700 tttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcc 17759 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 17760 atgaacagttgctcc 17774
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 442 bits (223), Expect = e-121 Identities = 516/615 (83%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17123 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17182 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||||||||||||||||||||||||||||||||||||||||||| ||||| || | | || Sbjct: 17183 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagag-atgc 17241 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| Sbjct: 17242 tcttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccat 17301 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || | ||| || || |||||||||||||||| Sbjct: 17302 tcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatc 17361 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||| | ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17362 ttctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatg 17421 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || || Sbjct: 17422 aatctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggct 17481 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| | |||||||||||||| Sbjct: 17482 ttgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgg 17541 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| ||||| ||| |||| ||||| ||||| ||||||||| || Sbjct: 17542 tatacatttgttccaactctcaaccctcttttctagattcatggatattgaatcaatcga 17601 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| |||| ||||| |||||||||||||| || ||||| |||| ||||||||| Sbjct: 17602 acgcacttctaagacctgttctacttttggaagaccctgtgttatatcaccagatctcga 17661 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| || Sbjct: 17662 tttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcc 17721 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 17722 atgaacagttgctcc 17736
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 442 bits (223), Expect = e-121 Identities = 495/587 (84%), Gaps = 1/587 (0%) Strand = Plus / Plus Query: 83 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 142 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 79536 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 79595 Query: 143 tgaaaacttgcttcagatatgaaactttgggtattcagggnaagcccttgttattcccaa 202 |||||||| ||||| |||||||||||||| |||||||| | | | ||||||||||||| Sbjct: 79596 tgaaaactcgcttcggatatgaaactttgagtattcagag-atgtttttgttattcccaa 79654 Query: 203 taagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaa 262 ||| | || || ||| | || | ||| ||||| || ||||| | |||||| |||||||| Sbjct: 79655 taataaagctcggtaacaaattgcttcttccaaggcacgcccagttcgttctgctcgcaa 79714 Query: 263 tagtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgnac 322 || ||| |||||||| || || ||||||||||||||||||| |||||| || Sbjct: 79715 taatccaattaattcaccgggtaaaaatacattagacattccatcttctgaaaccaagac 79774 Query: 323 ttttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttg 382 ||| ||||||| ||| || | |||||| || ||||||||||||||||| ||||| || || Sbjct: 79775 tttggatgttatttgacgcacaataatttcgatatgtctattatggatgtgtactccctg 79834 Query: 383 ggatcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttag 442 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 79835 ggatcgataaaccttttggattttattaaccaaagaaatacgactttgcgctatagttag 79894 Query: 443 ctcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattcca 502 |||||| |||||||||||||||||||| | || |||||||||| ||||| ||||||||| Sbjct: 79895 ctcagcaccaatcaagaatccccaaggaatgccgagaattcttgttatacactcattcca 79954 Query: 503 atcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagat 562 | | |||||||| |||||||||| |||| ||||||||| ||||| ||| || || Sbjct: 79955 agcatcaattcttttttcgagattcatcgatattgaatcaatcgaacgtatttctaatat 80014 Query: 563 ttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaa 622 ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| || Sbjct: 80015 ctgttccacttttggaagaccttgtgttatatcactggatctcgatttttcatatatgaa 80074 Query: 623 cgtaactaacctatctcccttgtaaaggatttctccataatgaccat 669 |||||||| ||||||| | |||||||||||||||||||| |||| Sbjct: 80075 tgtaactaaaatatctccttgataaaggatttctccataatggccat 80121
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 442 bits (223), Expect = e-121 Identities = 516/615 (83%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17011 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17070 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||||||||||||||||||||||||||||||||||||||||||| ||||| || | | || Sbjct: 17071 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagag-atgc 17129 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| Sbjct: 17130 tcttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccat 17189 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || | ||| || || |||||||||||||||| Sbjct: 17190 tcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatc 17249 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||| | ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17250 ttctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatg 17309 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || || Sbjct: 17310 aatctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggct 17369 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| | |||||||||||||| Sbjct: 17370 ttgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgg 17429 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| ||||| ||| |||| ||||| ||||| ||||||||| || Sbjct: 17430 tatacatttgttccaactctcaaccctcttttctagattcatggatattgaatcaatcga 17489 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| |||| ||||| |||||||||||||| || ||||| |||| ||||||||| Sbjct: 17490 acgcacttctaagacctgttctacttttggaagaccctgtgttatatcaccagatctcga 17549 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| || Sbjct: 17550 tttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcc 17609 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 17610 atgaacagttgctcc 17624
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 442 bits (223), Expect = e-121 Identities = 516/615 (83%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17340 acgttctctttcaggcctttcaaccaatcgatacgaccccgaagagccgcttttgctaaa 17399 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||| ||||||||||| |||||||||||||||||||| ||||| || | | || Sbjct: 17400 actcgagcagtctcttgaaaactcgcttcagatatgaaactttgagtattgagag-atgc 17458 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| Sbjct: 17459 tcttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccat 17518 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || | ||| || || |||||||||||||||| Sbjct: 17519 tcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatc 17578 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17579 ttctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatg 17638 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || || Sbjct: 17639 aatctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggct 17698 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| Sbjct: 17699 ttgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgt 17758 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| ||||||| ||| |||| ||||| ||||| ||||||||| || Sbjct: 17759 tatacatttgttccaaccctcaatcctcttttctagattcatggatattgaatcaatcga 17818 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||| ||||||||||||||||| ||||| |||| ||||||||| Sbjct: 17819 acgcacttctaatacctgttctacttttggaagaccttgtgttatatcaccagatctcga 17878 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| || Sbjct: 17879 tttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcc 17938 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 17939 atgaacagttgctcc 17953
>gb|AY757830.1|AY757829S2 Acorus gramineus RpoC2 (rpoC2) gene, partial cds; chloroplast Length = 1809 Score = 438 bits (221), Expect = e-119 Identities = 523/625 (83%), Gaps = 1/625 (0%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||||| ||||| ||||| || |||||||| ||| Sbjct: 1586 acgttctctttcaggcctttcaaccaatcaacacgaccccgtagagccgcttttgccaaa 1527 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| | | || Sbjct: 1526 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaag-acgc 1468 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||||||| |||||| ||||| ||| |||||||| || |||| Sbjct: 1467 tcttgttattcccaataagattgctcgataacggatcgcttcttccaaagcgcgacctgt 1408 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||| ||||| | |||||| | ||| || || |||||||||||||||| Sbjct: 1407 tcgttccgcccgcaacaatccgataagttctcccggtgaaaaaacattagacattccatc 1348 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| ||||||||||||||| ||||||| Sbjct: 1347 ttctgaaaccaacacttttgatgttatttgacgtacaataatctctatatgcttattatg 1288 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| || ||||||||||| |||||||| |||||||||||||| |||||||| Sbjct: 1287 aatctgcaccccctgagatcgataaactttttggatcttattaaccaaagagatacgact 1228 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||||||||| ||| || || |||||||||||||| || | ||||||||| ||| Sbjct: 1227 ttgcgctatggttaactcggcgccgatcaagaatccccagggaattccaagaatttttgt 1168 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||| | || |||||| | |||| || ||||||| || | |||| ||||||||||| Sbjct: 1167 tatatgttcgttccaaccttcaacccttttttcgaggttcgtcgatatggaatcaattga 1108 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 ||| |||| || | |||||| |||||||||||||| |||||||| |||| |||||| || Sbjct: 1107 acgtacttctaacacttgttctacttttggaagaccctgcgttatatcaccagatcttga 1048 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||| ||| ||||||| |||||| |||||||||||||| || Sbjct: 1047 tttttcatatataaatgtaattaatgtatctcctacgtaaagtatttctccataatggcc 988 Query: 668 attaacagttgctcctgtagtggcc 692 || |||||||||||||| ||||||| Sbjct: 987 atgaacagttgctcctggagtggcc 963
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 438 bits (221), Expect = e-119 Identities = 517/617 (83%), Gaps = 1/617 (0%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||| | ||||||||||||||| || || ||| | || || |||||||||||| Sbjct: 23129 acgttttcttttaggcctttcaaccaatcgatacgccctaggagagctgcttttgctaaa 23070 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||| || | || Sbjct: 23069 actcgagcggtttcttgaaaactcgcttcggatatgaaactttgagtattcatgg-atgc 23011 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| || | ||| |||||| ||| |||||||| ||||| Sbjct: 23010 tcttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgccccat 22951 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||||||||| | ||| |||| ||| || ||| ||||||||||| |||| Sbjct: 22950 tcgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatttcatc 22891 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 22890 ttctgaaaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatg 22831 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 22830 tatctgcaccccctgggatcgataaaccttttggaccttattaaccaaagagatacgact 22771 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||||| ||| ||||| |||||| ||||||| | ||||||||||||| Sbjct: 22770 ttgcactatagttagcttagcaccaataaagaatgcccaaggaattccaagaattcttgt 22711 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| ||||||| ||| |||| ||||| |||| ||||||||| || Sbjct: 22710 tatacatttgttccaaccctcaatcctcttttcaagattcatcgatattgaatcaatcga 22651 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||||||||||||||||||||||||||| |||| |||||| || Sbjct: 22650 acgcacttctaacacctgttccacttttggaagaccttgcgttatatcaccagatcttga 22591 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | |||||||||||| || ||||| || Sbjct: 22590 tttttcatatataaatgtaactaatgtatctccttcgtaaaggatttccccgtaatgtcc 22531 Query: 668 attaacagttgctcctg 684 || |||||||||||||| Sbjct: 22530 atgaacagttgctcctg 22514
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 434 bits (219), Expect = e-118 Identities = 515/615 (83%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17390 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17449 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || | | || Sbjct: 17450 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattgagag-atgc 17508 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| Sbjct: 17509 tcttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccat 17568 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || | ||| || || |||||||||||||||| Sbjct: 17569 tcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatc 17628 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||| ||| |||||||| Sbjct: 17629 ttctgaaaccaacacttttgatgttatttgacgtacaataatttctagatgcctattatg 17688 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || || Sbjct: 17689 aatctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggct 17748 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| Sbjct: 17749 ttgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgt 17808 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| ||||||| ||| |||| ||||| ||||| |||||||| || Sbjct: 17809 tatacatttgttccaaccctcaatcctcttttctagattcatggatattgaatcaaccga 17868 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||| ||||||||||||||||| ||||| |||| ||||||||| Sbjct: 17869 acgcacttctaacacctgttctacttttggaagaccttgtgttatatcaccagatctcga 17928 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| || Sbjct: 17929 tttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcc 17988 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 17989 atgaacagttgctcc 18003
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 434 bits (219), Expect = e-118 Identities = 515/615 (83%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17388 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17447 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| |||||||||||||||||||| ||||| || | | || Sbjct: 17448 actcgagcagtttcttgaaaactcgcttcagatatgaaactttgagtattgagag-atgc 17506 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| Sbjct: 17507 tcttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccat 17566 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || | ||| || || |||||||||||||||| Sbjct: 17567 tcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatc 17626 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||| ||| |||||||| Sbjct: 17627 ttctgaaaccaacacttttgatgttatttgacgtacaataatttctagatgcctattatg 17686 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || || Sbjct: 17687 aatctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggct 17746 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| | ||||||||||||| Sbjct: 17747 ttgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgt 17806 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| ||||||| ||| |||| ||||| ||||| |||||||| || Sbjct: 17807 tatacatttgttccaaccctcaatcctcttttctagattcatggatattgaatcaaccga 17866 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||| ||||||||||||||||| ||||| |||| ||||||||| Sbjct: 17867 acgcacttctaacacctgttctacttttggaagaccttgtgttatatcaccagatctcga 17926 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||||||| | ||||||| |||| |||||||| || Sbjct: 17927 tttttcatatataaatgtaactaatgtatctccttcgtaaagggtttccccataatggcc 17986 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 17987 atgaacagttgctcc 18001
>gb|DQ069543.1| Nuphar advena RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4170 Score = 432 bits (218), Expect = e-118 Identities = 511/610 (83%), Gaps = 1/610 (0%) Strand = Plus / Minus Query: 74 tctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcga 133 ||||||| |||||||||||||||||| ||||| || || || |||||||||||||||||| Sbjct: 3950 tctttcaggcctttcaaccaatcaatacgaccccggagagcggcttttgctaaaactcga 3891 Query: 134 gcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagcccttgt 193 || ||||| |||||||| ||||| |||||||||||||| |||||||| | | || || || Sbjct: 3890 gcggtttcctgaaaactagcttctgatatgaaactttgagtattcagag-atgctctcgt 3832 Query: 194 tattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgttc 253 |||||||||||||| || || ||| | || | || |||||||| || ||||||||||| Sbjct: 3831 tattcccaataagacggctcggtaacaaatagcctcttccaaagcacgacctgctcgttc 3772 Query: 254 cgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcgga 313 |||||||| | |||||||| |||||| || ||||||||||||||||||| || Sbjct: 3771 tgctcgcaacaatccgattagttccccgggtgaaaaaacattagacattccatcttctga 3712 Query: 314 aacccgnacttttgatgttacttggcgtataataatctctatatgtctattatggatctg 373 |||| ||||||||||||| ||| |||| ||||||||||||||| |||||||| ||||| Sbjct: 3711 aaccaacacttttgatgttatttgtcgtacaataatctctatatgcctattatgaatctg 3652 Query: 374 taccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgggc 433 |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct: 3651 taccccctgggatcgataaaccttttggatcttattaaccaaagaaatacgactttgcgc 3592 Query: 434 tatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtatacg 493 |||||| || ||||| ||||||| |||||||||||| | |||||||||| || |||| | Sbjct: 3591 tatggtgagttcagcaccaatcaggaatccccaaggaattccaagaattcctgttatatg 3532 Query: 494 ctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgc 553 || |||||| | |||| || |||| || || |||| ||||||||||||||| | Sbjct: 3531 ttcgttccaaccttcaacccttttttctaggttcatcgatattgaatcaattgaacgaac 3472 Query: 554 ttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttc 613 ||| || | |||||| || |||||||| || || ||||| |||| ||||||||||||||| Sbjct: 3471 ttctaacacttgttcaacctttggaaggccatgagttatatcaccagatctcgatttttc 3412 Query: 614 atatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccattaac 673 ||||||||| |||||||| ||||||| | ||||| |||||||||||||| ||||| ||| Sbjct: 3411 atatataaatgtaactaatgtatctccttcgtaaaagatttctccataatcaccatgaac 3352 Query: 674 agttgctcct 683 ||||||||| Sbjct: 3351 ggttgctcct 3342
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 422 bits (213), Expect = e-115 Identities = 515/617 (83%), Gaps = 1/617 (0%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||||| ||||||||||||||| || || || | || || |||||||||||| Sbjct: 23069 acgttttctttcaggcctttcaaccaatcgatacggcccaggagagctgcttttgctaaa 23010 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||| |||||||||||||||||| ||||| |||||||||||||| ||||||| | | || Sbjct: 23009 actctagcagtttcttgaaaactagcttcggatatgaaactttgagtattcatag-atgc 22951 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| || | ||| |||||| ||| |||||||| || || Sbjct: 22950 tcttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgtcccat 22891 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||||||||| | ||| |||| ||| || ||| ||||||||||| |||| Sbjct: 22890 tcgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatttcatc 22831 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 22830 ttctgaaaccaaaacttttgatgttatttgacgtacaataatttctatatgcctattatg 22771 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 22770 tatctgcaccccctgggagcgataaaccttttggaccttattaaccaaagagatacgact 22711 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||| ||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 22710 ttgcactatagttagttcagcaccaatcaagaatgcccaaggaattccaagaattcttgt 22651 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||| | |||||| ||||||| ||| |||||||||| |||| ||||||||| || Sbjct: 22650 tatagatttgttccaaccctcaatcctcttttcgagattcatcgatattgaatcaatcga 22591 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||||||||||||||||||||||||||| |||| |||||| || Sbjct: 22590 acgcacttctaacacctgttccacttttggaagaccttgcgttatatcaccagatcttga 22531 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| |||| || | |||||||||||| |||||||| || Sbjct: 22530 tttttcatatataaatgtaactaatgtatcgccttcgtaaaggatttccccataatgtcc 22471 Query: 668 attaacagttgctcctg 684 || |||||||||||||| Sbjct: 22470 atgaacagttgctcctg 22454
>gb|AY865171.1| Lactuca sativa chloroplast inversion region Length = 28722 Score = 422 bits (213), Expect = e-115 Identities = 515/617 (83%), Gaps = 1/617 (0%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||||| ||||||||||||||| || || || | || || |||||||||||| Sbjct: 17009 acgttttctttcaggcctttcaaccaatcgatacggcccaggagagctgcttttgctaaa 16950 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||| |||||||||||||||||| ||||| |||||||||||||| ||||||| | | || Sbjct: 16949 actctagcagtttcttgaaaactagcttcggatatgaaactttgagtattcatag-atgc 16891 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| || | ||| |||||| ||| |||||||| || || Sbjct: 16890 tcttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgtcccat 16831 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||||||||| | ||| |||| ||| || ||| ||||||||||| |||| Sbjct: 16830 tcgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatttcatc 16771 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 16770 ttctgaaaccaaaacttttgatgttatttgacgtacaataatttctatatgcctattatg 16711 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 16710 tatctgcaccccctgggagcgataaaccttttggaccttattaaccaaagagatacgact 16651 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||| ||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 16650 ttgcactatagttagttcagcaccaatcaagaatgcccaaggaattccaagaattcttgt 16591 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||| | |||||| ||||||| ||| |||||||||| |||| ||||||||| || Sbjct: 16590 tatagatttgttccaaccctcaatcctcttttcgagattcatcgatattgaatcaatcga 16531 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||||||||||||||||||||||||||| |||| |||||| || Sbjct: 16530 acgcacttctaacacctgttccacttttggaagaccttgcgttatatcaccagatcttga 16471 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| |||| || | |||||||||||| |||||||| || Sbjct: 16470 tttttcatatataaatgtaactaatgtatcgccttcgtaaaggatttccccataatgtcc 16411 Query: 668 attaacagttgctcctg 684 || |||||||||||||| Sbjct: 16410 atgaacagttgctcctg 16394
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 422 bits (213), Expect = e-115 Identities = 515/617 (83%), Gaps = 1/617 (0%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||||| ||||||||||||||| || || || | || || |||||||||||| Sbjct: 23069 acgttttctttcaggcctttcaaccaatcgatacggcccaggagagctgcttttgctaaa 23010 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||| |||||||||||||||||| ||||| |||||||||||||| ||||||| | | || Sbjct: 23009 actctagcagtttcttgaaaactagcttcggatatgaaactttgagtattcatag-atgc 22951 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| || | ||| |||||| ||| |||||||| || || Sbjct: 22950 tcttgttattcccaataagacggcttggtaacagatcgcttcttccaaagcgcgtcccat 22891 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 ||||||||||||||| | ||| |||| ||| || ||| ||||||||||| |||| Sbjct: 22890 tcgttccgctcgcaacaatccaattagttctccgggcgaaaaaacattagacatttcatc 22831 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 22830 ttctgaaaccaaaacttttgatgttatttgacgtacaataatttctatatgcctattatg 22771 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||||||||| |||||||||||||| |||||||| Sbjct: 22770 tatctgcaccccctgggagcgataaaccttttggaccttattaaccaaagagatacgact 22711 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||| ||||| |||||||||||| ||||||| | ||||||||||||| Sbjct: 22710 ttgcactatagttagttcagcaccaatcaagaatgcccaaggaattccaagaattcttgt 22651 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||| | |||||| ||||||| ||| |||||||||| |||| ||||||||| || Sbjct: 22650 tatagatttgttccaaccctcaatcctcttttcgagattcatcgatattgaatcaatcga 22591 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | ||||||||||||||||||||||||||||| |||| |||||| || Sbjct: 22590 acgcacttctaacacctgttccacttttggaagaccttgcgttatatcaccagatcttga 22531 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| |||| || | |||||||||||| |||||||| || Sbjct: 22530 tttttcatatataaatgtaactaatgtatcgccttcgtaaaggatttccccataatgtcc 22471 Query: 668 attaacagttgctcctg 684 || |||||||||||||| Sbjct: 22470 atgaacagttgctcctg 22454
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 414 bits (209), Expect = e-112 Identities = 520/625 (83%), Gaps = 1/625 (0%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||| | |||||||||||||||||| ||||| || || || ||||| |||||| Sbjct: 49487 acgttctcttttaggcctttcaaccaatcaatacgaccccggagagccgctttagctaaa 49428 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||| ||||| |||||||||||||| ||||||| | | | Sbjct: 49427 actcgagcagtttcttgaaaactcgcttcggatatgaaactttgagtattcaaag-atgt 49369 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 |||||||||||||||| || ||| ||| |||||||||| |||||||| ||||| | Sbjct: 49368 tcttgttattcccaataggaaggccttgtaacagatcgattcttccaaagcgcgccccgt 49309 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||||||||||| | ||| |||| ||| | ||| |||||||||||||||| Sbjct: 49308 ccgttccgctcgcaacaatccaattagttctctaggtaaaaaaacattagacattccatc 49249 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 || |||||| ||||| ||||||| |||||||| |||||| || || || |||||||| Sbjct: 49248 ctctgaaaccaacactttggatgttatttggcgtacaataatttcgatgtgcctattatg 49189 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||| || ||||| ||||||||||||||||||||||| |||||||||||||| || ||||| Sbjct: 49188 gatttggaccccctgggatcgataaaccttttggatcttattaaccaaagagatccgact 49129 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| |||| ||||||||||| |||||||||||||||||||| | ||||||||||||| Sbjct: 49128 ttgcactatagttagctcagccccaatcaagaatccccaaggaaatccaagaattcttgt 49069 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||| |||| ||||||| ||||| ||| |||| || || |||| |||||||| ||| Sbjct: 49068 tatatgctcgttccaattctcaactcttttttctaggttcaccgatattgaatcaactga 49009 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| || | |||||||||||||||||||| |||||||| |||| |||||||| Sbjct: 49008 acgcacttctaacacctgttccacttttggaagaccctgcgttatatcaccggatctcga 48949 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||| ||| || |||| ||||||| | |||||||||||||||||||| || Sbjct: 48948 tttttcatatagaaatgtcactactgtatctccgtcataaaggatttctccataatgtcc 48889 Query: 668 attaacagttgctcctgtagtggcc 692 || |||||||||||||| ||||||| Sbjct: 48888 atgaacagttgctcctggagtggcc 48864
>dbj|AK062380.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B08, full insert sequence Length = 714 Score = 410 bits (207), Expect = e-111 Identities = 289/318 (90%), Gaps = 3/318 (0%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactac 69 |||| ||||||||||||||| |||||||| |||||||||||||| || |||||| Sbjct: 315 aacggtgcacaaatttttgg-aatccggtaccaacaggtataatcccccccag-aactac 258 Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct: 257 gttttctttcaggcctttcaaccaatcaatacgacctcgtaaggcagcttttgctaaaac 198 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccc 189 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct: 197 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggaaa-ccc 139 Query: 190 ttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctc 249 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 138 ttgttattcccaataagattgcccgataatagatcgattcatccaaagcccgccctgctc 79 Query: 250 gttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatctt 309 | || |||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct: 78 gctctgctcgcaatagtccaattaattccccaggtaaaaaaacattagacattccatctt 19 Query: 310 cggaaacccgnacttttg 327 |||||||||| ||||||| Sbjct: 18 cggaaacccgcacttttg 1
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 410 bits (207), Expect = e-111 Identities = 512/615 (83%), Gaps = 1/615 (0%) Strand = Plus / Plus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| ||||||||||||||| || ||||| || || || |||||||||||| Sbjct: 17123 acgttctctttcaggcctttcaaccaatcgatacgaccccggagagccgcttttgctaaa 17182 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 |||||||||||||||||||||||||||||||||||||||||||| ||||| || | | || Sbjct: 17183 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgagtattgagag-atgc 17241 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 ||||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| Sbjct: 17242 tcttgttattcccaataagacgactcggtaacagatcgcttcttccaaagcgcgccccat 17301 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| |||||||| | ||| || | ||| || || |||||||||||||||| Sbjct: 17302 tcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacattagacattccatc 17361 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 ||| |||| | ||||||||||||| ||| |||| |||||| |||||||| |||||||| Sbjct: 17362 ttctgaaatcaacacttttgatgttatttgacgtacaataatttctatatgcctattatg 17421 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||| |||||||||| ||||||||||||||||||||| || || || Sbjct: 17422 aatctgcaccccctgggagcgataaacctgttggattttattaaccaaagagattcggct 17481 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||||||||||||||||||| | |||||||||||||| Sbjct: 17482 ttgcgctatagttagctcagcaccaatcaagaatccccaaggaattccaagaattcttgg 17541 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 ||||| | |||||| ||||| ||| |||| ||||| ||||| ||||||||| || Sbjct: 17542 tatacatttgttccaactctcaaccctcttttctagattcatggatattgaatcaatcga 17601 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 |||| |||| |||| ||||| |||||||||||||| || ||||| ||| |||| |||| Sbjct: 17602 acgcacttctaagacctgttctacttttggaagaccctgtgttatatcatcagatatcga 17661 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| |||||||| ||| ||| | || |||| |||| |||||||| || Sbjct: 17662 tttttcatatataaatgtaactaatgtatttccttggttaagggtttccccataatggcc 17721 Query: 668 attaacagttgctcc 682 || |||||||||||| Sbjct: 17722 atgaacagttgctcc 17736
>gb|AC146587.20| Medicago truncatula clone mth2-144j8, complete sequence Length = 113373 Score = 398 bits (201), Expect = e-108 Identities = 485/581 (83%), Gaps = 1/581 (0%) Strand = Plus / Minus Query: 84 ctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttctt 143 |||||||||||||||| ||||| || || || |||||||||||||||| ||||||||||| Sbjct: 23975 ctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttctt 23916 Query: 144 gaaaacttgcttcagatatgaaactttgggtattcagggnaagcccttgttattcccaat 203 ||||||| ||||| |||||||||||||| |||||||| | | | |||||||||||||| Sbjct: 23915 gaaaactcgcttcggatatgaaactttgagtattcagag-atgtttttgttattcccaat 23857 Query: 204 aagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaat 263 || | || || ||| | || | ||| ||||| || ||||| | |||||| ||||||||| Sbjct: 23856 aataaagctcggtaacaaattgcttcttccaaggcacgcccagttcgttctgctcgcaat 23797 Query: 264 agtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgnact 323 | ||| |||||||| ||||| ||||| ||||||||||||| || ||| ||| Sbjct: 23796 aatccaattaattcaccaggtaaaaatacattaaacattccatcttctgagaccaagact 23737 Query: 324 tttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgg 383 || ||||| | ||| || | |||||| || ||||||||||||||||| ||||| || ||| Sbjct: 23736 ttggatgtcatttgacgcacaataatttcgatatgtctattatggatgtgtactccctgg 23677 Query: 384 gatcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagc 443 ||||||||||||||||||||||||||||||||||||||||||||||| || || |||||| Sbjct: 23676 gatcgataaaccttttggattttattaaccaaagaaatacgactttgcgcgatagttagc 23617 Query: 444 tcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattccaa 503 ||||| |||||||||||||||||||| | || |||||||||| ||||| |||||||||| Sbjct: 23616 tcagcaccaatcaagaatccccaaggaatgccgagaattcttgttatacactcattccaa 23557 Query: 504 tcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatt 563 | || |||| |||||||||| |||| ||||||||| ||||| ||| || ||| Sbjct: 23556 gcatcgattcctttttcgagattcatcgatattgaatcaatcgaacgtatttctaatatt 23497 Query: 564 tgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaac 623 ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||| || Sbjct: 23496 tgttccacttttggaagaccttgtgttatatcaccggatctcgatttttcatatatgaat 23437 Query: 624 gtaactaacctatctcccttgtaaaggatttctccataatg 664 |||||||| ||||||| | |||||||||||||||||||| Sbjct: 23436 gtaactaaaatatctccttgataaaggatttctccataatg 23396
>dbj|AB189069.1| Silene latifolia chloroplast DNA, partial sequence, rpoB gene to rps7 gene region Length = 47249 Score = 398 bits (201), Expect = e-108 Identities = 512/617 (82%), Gaps = 1/617 (0%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||| || ||||||||||||||||| || ||||| || ||||||||||||||| Sbjct: 11207 acgttttcttttaatcctttcaaccaatcaatacggcctcggagagcagcttttgctaaa 11148 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagc 187 ||||||||||||||||||||||||||||| ||||| |||||||| |||||||| | | || Sbjct: 11147 actcgagcagtttcttgaaaacttgcttcggatataaaactttgagtattcagag-atgc 11089 Query: 188 ccttgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgc 247 || ||||||||||||||||| | || ||| |||||| ||| |||||||| ||||| | Sbjct: 11088 tctcgttattcccaataagatcgttcggtaacagatcgcttcttccaaagcgcgccccgt 11029 Query: 248 tcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatc 307 |||||| ||||| || | ||| || | ||| || ||| ||||||||||||||| Sbjct: 11028 tcgttctgctcgaaacaatccaatgagttctccgggcaaaaaaatattagacattccatc 10969 Query: 308 ttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatg 367 || |||||| ||||| ||||||| ||| |||| |||||| || ||||| | || ||| Sbjct: 10968 ctctgaaaccaagactttagatgttatttgccgtacaataatttcgatatgccgatcatg 10909 Query: 368 gatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgact 427 ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 10908 aatctgcaccccctgggatcgataaaccttttggatcttattaaccaaagagatacgact 10849 Query: 428 ttgggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttgg 487 ||| ||||| ||||||||||| |||| |||||||||||| || | ||||||||| || Sbjct: 10848 ttgcgctatagttagctcagccccaaccaagaatccccacggaattccaagaattttttt 10789 Query: 488 tatacgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattga 547 |||||| || |||||| | | ||| ||| |||||||||| ||||| ||| |||| || Sbjct: 10788 tatacgttcgttccaaccattaatcctcttttcgagattcatggatattgactcaaccga 10729 Query: 548 acgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcga 607 ||| |||| |||| ||||||||||||||| |||||||||||||| |||| ||| ||||| Sbjct: 10728 acgaacttctaagacttgttccacttttggcagaccttgcgttatatcaccagacctcga 10669 Query: 608 tttttcatatataaacgtaactaacctatctcccttgtaaaggatttctccataatgacc 667 ||||||||||||||| ||||||| |||| || | |||| ||||||||||||||| || Sbjct: 10668 tttttcatatataaatgtaactagggtatccccttcataaatgatttctccataatgccc 10609 Query: 668 attaacagttgctcctg 684 || ||| |||||||||| Sbjct: 10608 atgaactgttgctcctg 10592
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 392 bits (198), Expect = e-106 Identities = 506/610 (82%), Gaps = 1/610 (0%) Strand = Plus / Plus Query: 74 tctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcga 133 ||||||| ||||||||||||||||| ||||| || || || |||||||||||||||||| Sbjct: 18752 tctttcagacctttcaaccaatcaatacgaccccggagagcggcttttgctaaaactcga 18811 Query: 134 gcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagcccttgt 193 || ||||| |||||||| ||||| |||||||||||||| |||||||| | | || || || Sbjct: 18812 gcggtttcctgaaaactagcttctgatatgaaactttgagtattcagag-atgctctcgt 18870 Query: 194 tattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgttc 253 |||||||||||||| || || ||| | || | || |||||||| || ||||||||||| Sbjct: 18871 tattcccaataagacggctcggtaacaaatagcctcttccaaagcacgacctgctcgttc 18930 Query: 254 cgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcgga 313 |||||||| | |||||||| |||||| || ||||||||||||||||||| || Sbjct: 18931 tgctcgcaacaatccgattagttccccgggtgaaaaaacattagacattccatcttctga 18990 Query: 314 aacccgnacttttgatgttacttggcgtataataatctctatatgtctattatggatctg 373 |||| ||||||||||||| ||| |||| ||||||||||||||| ||||||| ||||| Sbjct: 18991 aaccaacacttttgatgttatttgtcgtacaataatctctatatgcttattatgaatctg 19050 Query: 374 taccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgggc 433 |||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| || Sbjct: 19051 taccccctgggatcgataaaccttttggatcttattaaccaaagaaacacgactttgcgc 19110 Query: 434 tatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtatacg 493 |||||| || ||||| ||||||| |||||||||||| | |||||||| | || |||| | Sbjct: 19111 tatggtgagttcagcaccaatcaggaatccccaaggaattccaagaatgcctgttatatg 19170 Query: 494 ctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgc 553 || |||||| | |||| || |||| || || |||| ||||||||| ||||| | Sbjct: 19171 ttcgttccaaccttcaacccttttttctaggttcatcgatattgaatcaatcgaacgaac 19230 Query: 554 ttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttc 613 ||| || | |||||| || |||||||| || || ||||| |||| ||||||||||||||| Sbjct: 19231 ttctaacacttgttcaacctttggaaggccgtgagttatatcaccagatctcgatttttc 19290 Query: 614 atatataaacgtaactaacctatctcccttgtaaaggatttctccataatgaccattaac 673 ||||||||| |||||||| ||||||| | ||||| |||||||||||||| ||||| ||| Sbjct: 19291 atatataaatgtaactaatgtatctccttcgtaaaagatttctccataatcaccatgaac 19350 Query: 674 agttgctcct 683 ||||||||| Sbjct: 19351 ggttgctcct 19360
>gb|AC145457.1| Cicer arietinum strain FLIP84-92C clone gl1-40c9, complete sequence Length = 23359 Score = 389 bits (196), Expect = e-105 Identities = 498/600 (83%), Gaps = 1/600 (0%) Strand = Plus / Plus Query: 83 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 142 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 618 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 677 Query: 143 tgaaaacttgcttcagatatgaaactttgggtattcagggnaagcccttgttattcccaa 202 |||||||| ||||| |||||||||||||| ||||| || | | | ||||||||||||| Sbjct: 678 tgaaaactcgcttcggatatgaaactttgagtatttagag-atgtttttgttattcccaa 736 Query: 203 taagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaa 262 ||| | || || ||| | || | ||| ||||| || ||||| | |||||| |||||||| Sbjct: 737 taataaagctcggtaacaaattgcttcttccaatgcacgccccgttcgttctgctcgcaa 796 Query: 263 tagtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgnac 322 || ||| || | |||||| || ||||||||||||||||||| |||||| || Sbjct: 797 taatccaatgagttccccgggtaaaaatacattagacattccatcttccgaaaccaatac 856 Query: 323 ttttgatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttg 382 ||| ||||||| ||| || | |||||| || ||||||||||||||||| ||||| || || Sbjct: 857 tttggatgttatttgacgcacaataatttcgatatgtctattatggatgtgtactccctg 916 Query: 383 ggatcgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttag 442 |||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| Sbjct: 917 ggatcgataaaccttttgtattttattaaccaaagaaatgcgactttgcgctatagttag 976 Query: 443 ctcagctccaatcaagaatccccaagggaccccaagaattcttggtatacgctcattcca 502 |||||| |||||||||||||||||||| | || |||||||||||||||| ||| ||||| Sbjct: 977 ctcagcaccaatcaagaatccccaaggaataccgagaattcttggtatacactcgttcca 1036 Query: 503 atcctcaattctcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagat 562 | | ||||||| |||| ||||| |||| ||||||||| ||||| ||| || || Sbjct: 1037 agcatcaattcgtttttctagattcatcgatattgaatcaatcgaacgtatttctaatat 1096 Query: 563 ttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaa 622 ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| Sbjct: 1097 ctgttccacttttggaagaccttgtgttatatcaccggatctcgatttttcatatataaa 1156 Query: 623 cgtaactaacctatctcccttgtaaaggatttctccataatgaccattaacagttgctcc 682 |||||||| ||||||| | | |||||||||||||||||| |||| || |||||||| Sbjct: 1157 tgtaactaaaatatctccttcatcaaggatttctccataatggccatgaatggttgctcc 1216
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 351 bits (177), Expect = 2e-93 Identities = 464/561 (82%), Gaps = 1/561 (0%) Strand = Plus / Plus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 |||||||||| ||||||||||||||| || ||||| || || |||||||||||||||||| Sbjct: 16140 ttttctttcaggcctttcaaccaatcgatacgaccccgaagagcagcttttgctaaaact 16199 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccct 190 |||||||||||||||||||||||||| ||||| |||||||| ||||||| | | || | Sbjct: 16200 cgagcagtttcttgaaaacttgcttcggatataaaactttgagtattcaaag-atgctcg 16258 Query: 191 tgttattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcg 250 |||||||| ||||| | || |||||| |||| | ||| || ||||| ||||| | ||| Sbjct: 16259 agttattcctaataaaacggctcgataacagattgcttcttctaaagcacgccccgttcg 16318 Query: 251 ttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttc 310 ||| ||||| |||| ||| || | ||| ||||| ||||||||||||| ||||| Sbjct: 16319 ttctgctcgtaataatccaataagttctccaggtaaaaaaacattagacattccctcttc 16378 Query: 311 ggaaacccgnacttttgatgttacttggcgtataataatctctatatgtctattatggat 370 ||||||| ||||||||||||| ||| |||| |||||| || ||||| |||||||| || Sbjct: 16379 ggaaaccaaaacttttgatgttatttgacgtacaataatttcgatatgcctattatgaat 16438 Query: 371 ctgtaccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttg 430 ||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 16439 ctgcaccccctgggatcgataaaccttttgaatcttattaaccaaagaaatacgactttg 16498 Query: 431 ggctatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtat 490 |||| |||| |||||| |||||||||||||||||||| | ||||||||||||| ||| Sbjct: 16499 cactatagttaactcagcaccaatcaagaatccccaaggaattccaagaattcttgttat 16558 Query: 491 acgctcattccaatcctcaattctcctttcgagattgggggataatgaatcaattgaacg 550 || || |||||| ||| ||| | | |||| | || |||| ||||||||| || || Sbjct: 16559 acacttgttccaacccttaatccgcttttctaagttcaacgatattgaatcaatcgagcg 16618 Query: 551 cgcttcaaagatttgttccacttttggaagaccttgcgttatgtcactagatctcgattt 610 |||| || | |||||| ||||||||||||||||| ||||| |||| ||||||||||| Sbjct: 16619 gacttctaaaacttgttctacttttggaagaccttgggttatatcaccggatctcgattt 16678 Query: 611 ttcatatataaacgtaactaa 631 |||||||||||| |||||||| Sbjct: 16679 ttcatatataaatgtaactaa 16699
>gb|DQ069544.1| Ranunculus macranthus RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4128 Score = 337 bits (170), Expect = 3e-89 Identities = 364/430 (84%), Gaps = 1/430 (0%) Strand = Plus / Minus Query: 74 tctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcga 133 ||||||| ||||||||||||||||| |||||||||| || |||||||||||||||| | Sbjct: 3932 tctttcagtcctttcaaccaatcaatacgacctcgtaaagcggcttttgctaaaactcta 3873 Query: 134 gcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagcccttgt 193 ||||||||||||||||| |||||||||||||||||||| |||||||| | | ||||| || Sbjct: 3872 gcagtttcttgaaaactcgcttcagatatgaaactttgagtattcagag-atgccctcgt 3814 Query: 194 tattcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgttc 253 |||||| ||||| | || || ||| |||||| ||| |||||||| ||||| | |||||| Sbjct: 3813 tattcctaataaaacggctcggtaacagatcgcttcttccaaagcgcgccccgttcgttc 3754 Query: 254 cgctcgcaatagtccgattaattccccaggcnnnnnnncattagacattccatcttcgga 313 ||| | ||| | ||| |||||||| || || ||||||||||||||||||| || Sbjct: 3753 cgccctcaacaatccaattaattcaccgggtgaaaaaacattagacattccatcttctga 3694 Query: 314 aacccgnacttttgatgttacttggcgtataataatctctatatgtctattatggatctg 373 |||| ||||||||||||| ||| |||| |||||| |||||||| |||||||| ||||| Sbjct: 3693 aaccaacacttttgatgttatttgacgtacaataatttctatatgcctattatgtatctg 3634 Query: 374 taccccttgggatcgataaaccttttggattttattaaccaaagaaatacgactttgggc 433 || || || || |||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 3633 cacgccctgcgagcgataaaccttttgaatcttattaaccaaagatatacgactttgtgc 3574 Query: 434 tatggttagctcagctccaatcaagaatccccaagggaccccaagaattcttggtatacg 493 ||||||||||||||| |||||||||||||||||||| | ||||||| |||||| |||||| Sbjct: 3573 tatggttagctcagcgccaatcaagaatccccaaggaatcccaagagttcttgttatacg 3514 Query: 494 ctcattccaa 503 || |||||| Sbjct: 3513 ttcgttccaa 3504 Score = 147 bits (74), Expect = 6e-32 Identities = 134/154 (87%) Strand = Plus / Minus Query: 531 gataatgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgtt 590 |||| ||||||||| ||||| |||| || | |||||| ||||||||||||||||||||| Sbjct: 3476 gatattgaatcaatcgaacgaacttctaacacttgttctacttttggaagaccttgcgtt 3417 Query: 591 atgtcactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaagg 650 || |||| ||||||||||||||||||||||| |||||||| ||||||| | ||||||| Sbjct: 3416 atatcacccgatctcgatttttcatatataaatgtaactaatgtatctccttcgtaaagg 3357 Query: 651 atttctccataatgaccattaacagttgctcctg 684 ||||| |||||||| |||| ||| |||||||||| Sbjct: 3356 atttccccataatggccatgaacggttgctcctg 3323
>gb|AF289093.1| Glycine max chloroplast rpoBC gene cluster, complete sequence Length = 12968 Score = 299 bits (151), Expect = 6e-78 Identities = 368/443 (83%) Strand = Plus / Minus Query: 240 cgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagac 299 |||||||||||||| |||||||| | ||| |||| ||| || ||| |||||||| Sbjct: 11558 cgccctgctcgttcggctcgcaacaatccaattagttcaccgggcaaaaaaacattagac 11499 Query: 300 attccatcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgt 359 |||||||||||||||||| ||||||||||||| ||| || | |||||| ||||||||| Sbjct: 11498 attccatcttcggaaaccaagacttttgatgttatttgacgcacaataatttctatatgt 11439 Query: 360 ctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaa 419 |||||||| || || || || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 11438 ctattatgaatgtgaactccctgggatcgataaactttttgaattttattaaccaaagaa 11379 Query: 420 atacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaaga 479 ||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| Sbjct: 11378 atacgactttgcgctatcgttagctcagcaccaatcaagaatccccaaggaatgccaaga 11319 Query: 480 attcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaa 539 ||| ||| ||||||| |||||||| |||| |||| |||| || || |||| |||| Sbjct: 11318 atttttgttatacgcccattccaagtatcaactctcttttctaggttcatcgatattgaa 11259 Query: 540 tcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcacta 599 ||||| ||||| |||| || | ||||| ||||||||||||||||| ||||| |||| Sbjct: 11258 tcaatcgaacgaacttctaatacctgttctacttttggaagaccttgtgttatatcaccc 11199 Query: 600 gatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctcca 659 ||||||||||||||||| ||||| |||||||| ||||||| | |||| ||||| ||| Sbjct: 11198 gatctcgatttttcatagataaatgtaactaatatatctccttcagaaagtatttcccca 11139 Query: 660 taatgaccattaacagttgctcc 682 ||||| |||| ||| |||||||| Sbjct: 11138 taatggccatgaaccgttgctcc 11116 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| |||||||||||||| ||||| || || || || ||||||| |||| Sbjct: 11729 acgttctctttcagacctttcaaccaatctatgcgcccccggagagcggcttttgataaa 11670 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcag 180 |||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 11669 actctagcagtttcttgaaaacttgcttcagatatgaaactttgagtattcag 11617
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 299 bits (151), Expect = 6e-78 Identities = 368/443 (83%) Strand = Plus / Minus Query: 240 cgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncattagac 299 |||||||||||||| |||||||| | ||| |||| ||| || ||| |||||||| Sbjct: 44350 cgccctgctcgttcggctcgcaacaatccaattagttcaccgggcaaaaaaacattagac 44291 Query: 300 attccatcttcggaaacccgnacttttgatgttacttggcgtataataatctctatatgt 359 |||||||||||||||||| ||||||||||||| ||| || | |||||| ||||||||| Sbjct: 44290 attccatcttcggaaaccaagacttttgatgttatttgacgcacaataatttctatatgt 44231 Query: 360 ctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaa 419 |||||||| || || || || |||||||||||||| ||||| |||||||||||||||||| Sbjct: 44230 ctattatgaatgtgaactccctgggatcgataaactttttgaattttattaaccaaagaa 44171 Query: 420 atacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaaga 479 ||||||||||| ||||| ||||||||||| |||||||||||||||||||| | |||||| Sbjct: 44170 atacgactttgcgctatcgttagctcagcaccaatcaagaatccccaaggaatgccaaga 44111 Query: 480 attcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataatgaa 539 ||| ||| ||||||| |||||||| |||| |||| |||| || || |||| |||| Sbjct: 44110 atttttgttatacgcccattccaagtatcaactctcttttctaggttcatcgatattgaa 44051 Query: 540 tcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtcacta 599 ||||| ||||| |||| || | ||||| ||||||||||||||||| ||||| |||| Sbjct: 44050 tcaatcgaacgaacttctaatacctgttctacttttggaagaccttgtgttatatcaccc 43991 Query: 600 gatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggatttctcca 659 ||||||||||||||||| ||||| |||||||| ||||||| | |||| ||||| ||| Sbjct: 43990 gatctcgatttttcatagataaatgtaactaatatatctccttcagaaagtatttcccca 43931 Query: 660 taatgaccattaacagttgctcc 682 ||||| |||| ||| |||||||| Sbjct: 43930 taatggccatgaaccgttgctcc 43908 Score = 129 bits (65), Expect = 1e-26 Identities = 101/113 (89%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||| ||||||| |||||||||||||| ||||| || || || || ||||||| |||| Sbjct: 44521 acgttctctttcagacctttcaaccaatctatgcgcccccggagagcggcttttgataaa 44462 Query: 128 actcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcag 180 |||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 44461 actctagcagtttcttgaaaacttgcttcagatatgaaactttgagtattcag 44409
>emb|X03912.1|CHPSATPA Pea chloroplast DNA (4.7 kb) 5' to ATP-synthase a subunit gene Length = 4680 Score = 295 bits (149), Expect = 1e-76 Identities = 298/348 (85%) Strand = Plus / Minus Query: 293 attagacattccatcttcggaaacccgnacttttgatgttacttggcgtataataatctc 352 |||||||||||||||||| |||||| ||||| ||||||| ||| || | ||||||||| Sbjct: 3091 attagacattccatcttctgaaaccaagactttggatgttatttgacgcacaataatctc 3032 Query: 353 tatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaac 412 ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct: 3031 gatatgtctattatggatgtgtactccctgggatcgataaaccttttggattttattaac 2972 Query: 413 caaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaagggac 472 |||||||||||||||||| || || ||||||||||| |||||||||||||||||||| | Sbjct: 2971 caaagaaatacgactttgcgcgatagttagctcagcaccaatcaagaatccccaaggaat 2912 Query: 473 cccaagaattcttggtatacgctcattccaatcctcaattctcctttcgagattggggga 532 || | |||| ||| ||||| ||| |||||| | |||||||| |||| ||||| ||| Sbjct: 2911 gccgataatttttgttatacactcgttccaagcatcaattcttttttctagattcatgga 2852 Query: 533 taatgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttat 592 || ||||||||| ||||| ||| || || ||||||||||||||||||||||| ||||| Sbjct: 2851 tattgaatcaatcgaacgtatttctaatatctgttccacttttggaagaccttgtgttat 2792 Query: 593 gtcactagatctcgatttttcatatataaacgtaactaacctatctcc 640 |||| |||||||||||||||||||| || |||||||| ||||||| Sbjct: 2791 atcaccggatctcgatttttcatatatgaatgtaactaaaatatctcc 2744 Score = 123 bits (62), Expect = 8e-25 Identities = 89/98 (90%) Strand = Plus / Minus Query: 83 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 142 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 3300 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 3241 Query: 143 tgaaaacttgcttcagatatgaaactttgggtattcag 180 |||||||| ||||| |||||||||||||| |||||||| Sbjct: 3240 tgaaaactcgcttcggatatgaaactttgagtattcag 3203
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 293 bits (148), Expect = 4e-76 Identities = 330/391 (84%) Strand = Plus / Plus Query: 292 cattagacattccatcttcggaaacccgnacttttgatgttacttggcgtataataatct 351 ||||||||||||||||||| |||||| ||||||||||||| ||| |||| |||| | | Sbjct: 20407 cattagacattccatcttctgaaaccaagacttttgatgttatttgtcgtacaatagttt 20466 Query: 352 ctatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaa 411 ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct: 20467 ctatatgcctattatggatctgcaccccctgggatcgataaaccttttggatcttattaa 20526 Query: 412 ccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaaggga 471 ||||||| ||||||||||| |||||||||||| ||| | ||| |||||| |||| || | Sbjct: 20527 ccaaagagatacgactttgcactatggttagctgagcactaataaagaattcccagggaa 20586 Query: 472 ccccaagaattcttggtatacgctcattccaatcctcaattctcctttcgagattggggg 531 ||||||| || || ||| || || ||||| | |||| ||| |||| || || | Sbjct: 20587 ttccaagaaatcctgttatgcgttcgttccagccttcaaccctcttttctaggttcatcg 20646 Query: 532 ataatgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgtta 591 ||| ||||||||| ||||| |||| || | |||||| ||||||||||||||||| |||| Sbjct: 20647 atattgaatcaatcgaacgaacttctaacacttgttcaacttttggaagaccttgagtta 20706 Query: 592 tgtcactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaagga 651 | |||| |||||| ||||||||||||||||| |||||||| ||||||||| |||||||| Sbjct: 20707 tatcaccagatcttgatttttcatatataaaagtaactaatgtatctccctcgtaaagga 20766 Query: 652 tttctccataatgaccattaacagttgctcc 682 |||||||||||||||||| ||| |||||||| Sbjct: 20767 tttctccataatgaccatgaacggttgctcc 20797 Score = 117 bits (59), Expect = 5e-23 Identities = 114/131 (87%), Gaps = 1/131 (0%) Strand = Plus / Plus Query: 74 tctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcga 133 ||||||| |||||||||||||||||| |||| ||| || || ||||| |||||||| ||| Sbjct: 20190 tctttcaggcctttcaaccaatcaatacgacttcggagagcggctttcgctaaaacccga 20249 Query: 134 gcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagcccttgt 193 | |||||||||||||| ||||| |||||||||||||| |||||||| | | ||||| || Sbjct: 20250 gtggtttcttgaaaactcgcttctgatatgaaactttgagtattcagag-atgccctcgt 20308 Query: 194 tattcccaata 204 ||||||||||| Sbjct: 20309 tattcccaata 20319
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 285 bits (144), Expect = 1e-73 Identities = 329/391 (84%) Strand = Plus / Minus Query: 292 cattagacattccatcttcggaaacccgnacttttgatgttacttggcgtataataatct 351 |||| |||||||||||||| || ||| ||||||||||||| ||| || | |||||| | Sbjct: 44285 cattcgacattccatcttctgacaccaagacttttgatgttatttgacgaacaataattt 44226 Query: 352 ctatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaa 411 | ||||||||||||||||| || || || |||||||||||||| ||||||||||||| | Sbjct: 44225 cgatatgtctattatggatgtgcactccctgggatcgataaactctttggattttattca 44166 Query: 412 ccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaaggga 471 ||||||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||| | Sbjct: 44165 ccaaagaaatacgactttgagctatagttagctcagcaccaatcaagaatctccaaggaa 44106 Query: 472 ccccaagaattcttggtatacgctcattccaatcctcaattctcctttcgagattggggg 531 || ||||||| || |||||| || |||||| | ||||||||| |||| || || | Sbjct: 44105 tgcccagaattcctgttatacgttcgttccaagcatcaattctcttttctaggttcattg 44046 Query: 532 ataatgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgtta 591 ||| ||||||||| ||||| |||| || | ||||| ||||||||||||||||| |||| Sbjct: 44045 atattgaatcaatcgaacgtacttctaatacctgttctacttttggaagaccttgtgtta 43986 Query: 592 tgtcactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaagga 651 | |||| |||||||||||||||||||||||| |||||||| ||||||| | ||||| | Sbjct: 43985 tatcaccagatctcgatttttcatatataaatgtaactaatatatctccttcataaagca 43926 Query: 652 tttctccataatgaccattaacagttgctcc 682 ||||||||||||| |||| || ||||||||| Sbjct: 43925 tttctccataatgtccatgaatagttgctcc 43895 Score = 133 bits (67), Expect = 8e-28 Identities = 100/111 (90%) Strand = Plus / Minus Query: 70 gttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaac 129 ||||||||| | |||||||||||||| || |||||||| || || |||||||||||||| Sbjct: 44506 gttttcttttagacctttcaaccaatcgatacgacctcggagagcggcttttgctaaaac 44447 Query: 130 tcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcag 180 || |||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct: 44446 tctagcagtttcttgaaaacttgcttcggatatgaaactttgagtattcag 44396
>emb|AJ243754.2|SAL243754 Sinapis alba chloroplast rpoB operon (rpoB, rpoC1 and rpoC2 genes) Length = 11206 Score = 270 bits (136), Expect = 6e-69 Identities = 327/391 (83%) Strand = Plus / Minus Query: 292 cattagacattccatcttcggaaacccgnacttttgatgttacttggcgtataataatct 351 ||||||||||||| ||||| |||||| ||||||||||||| ||| |||| |||||| | Sbjct: 10615 cattagacattccctcttctgaaaccaaaacttttgatgttatttgacgtacaataattt 10556 Query: 352 ctatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaa 411 | ||||| |||||||| ||||| ||||| ||||||| |||||||| || ||| ||||||| Sbjct: 10555 cgatatgcctattatgaatctgcaccccctgggatctataaacctgtttgatcttattaa 10496 Query: 412 ccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaaggga 471 ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| | Sbjct: 10495 ccaaagaaatacgactttgcactatagttagctcagcaccaatcaagaatccccaaggaa 10436 Query: 472 ccccaagaattcttggtatacgctcattccaatcctcaattctcctttcgagattggggg 531 ||||||||||||| ||||| | |||||| ||| ||| | | |||| | || | | Sbjct: 10435 ttccaagaattcttgttatacacctgttccaacccttaatccgcttttctaagttcagcg 10376 Query: 532 ataatgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgtta 591 ||| ||||||||| || ||| |||| || | ||||| ||||||||||||||||| |||| Sbjct: 10375 atattgaatcaatcgagcgcacttctaacacctgttcgacttttggaagaccttgtgtta 10316 Query: 592 tgtcactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaagga 651 | |||| ||||||||||||||||||||||| |||||||| ||||||||| |||||| | Sbjct: 10315 tatcaccggatctcgatttttcatatataaatgtaactaatgtatctccctcgtaaagaa 10256 Query: 652 tttctccataatgaccattaacagttgctcc 682 |||||| |||||| |||| ||| ||||||| Sbjct: 10255 tttctctataatgcccatgaacttttgctcc 10225 Score = 145 bits (73), Expect = 2e-31 Identities = 100/109 (91%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 |||||||||| ||||||||||||||| || ||||| || || |||||||||||||||||| Sbjct: 10835 ttttctttcaggcctttcaaccaatcgatacgaccccgaagagcagcttttgctaaaact 10776 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattca 179 |||||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 10775 cgagcagtttcttgaaaacttgcttcggatataaaactttgagtattca 10727
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 258 bits (130), Expect = 2e-65 Identities = 312/373 (83%) Strand = Plus / Plus Query: 292 cattagacattccatcttcggaaacccgnacttttgatgttacttggcgtataataatct 351 ||||||||||||| ||||| |||||| ||||||||||||| ||| |||| |||||| | Sbjct: 15994 cattagacattccctcttctgaaaccaaaacttttgatgttatttgacgtacaataattt 16053 Query: 352 ctatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaa 411 | ||||| |||||||| ||||| ||||| |||||||||||||||||||| || ||||||| Sbjct: 16054 cgatatgcctattatgaatctgcaccccctgggatcgataaaccttttgaatcttattaa 16113 Query: 412 ccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaaggga 471 ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| | Sbjct: 16114 ccaaagaaatacgactttgcactatagttagctcagcaccaatcaagaatccccaaggaa 16173 Query: 472 ccccaagaattcttggtatacgctcattccaatcctcaattctcctttcgagattggggg 531 ||||||||||||| ||||| | |||||| ||| ||| | | |||| | || | | Sbjct: 16174 ttccaagaattcttgttatacacctgttccaacccttaatccgcttttctaagttcagtg 16233 Query: 532 ataatgaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgtta 591 ||| ||||||||| || || |||| || | ||||| ||||||||||||||||| |||| Sbjct: 16234 atattgaatcaatcgagcggacttctaacacctgttctacttttggaagaccttgggtta 16293 Query: 592 tgtcactagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaagga 651 | |||| ||||||||||||||||||||||| |||||||| |||| || | |||||| | Sbjct: 16294 tatcaccggatctcgatttttcatatataaatgtaactaatgtatccccttcgtaaagaa 16353 Query: 652 tttctccataatg 664 |||||| |||||| Sbjct: 16354 tttctctataatg 16366 Score = 137 bits (69), Expect = 5e-29 Identities = 99/109 (90%) Strand = Plus / Plus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 |||||||||| ||||||||||||||| || ||||| || || |||||||||||||||||| Sbjct: 15774 ttttctttcaggcctttcaaccaatcgatacgaccccgaagagcagcttttgctaaaact 15833 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattca 179 | |||||||||||||||||||||||| ||||| |||||||| ||||||| Sbjct: 15834 ctagcagtttcttgaaaacttgcttcggatataaaactttgagtattca 15882
>dbj|AB098212.1| Nicotiana sylvestris rpoC2 gene for RNA polymerase beta'' subunit, partial cds Length = 336 Score = 220 bits (111), Expect = 5e-54 Identities = 275/331 (83%), Gaps = 1/331 (0%) Strand = Plus / Minus Query: 88 caaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaa 147 ||||||||| || ||||| || || || |||||||||||||||||||||||||||||||| Sbjct: 336 caaccaatcgatacgaccccggagagccgcttttgctaaaactcgagcagtttcttgaaa 277 Query: 148 acttgcttcagatatgaaactttgggtattcagggnaagcccttgttattcccaataaga 207 ||| |||||||||||||||||||| ||||| || | | || ||||||||||||||||||| Sbjct: 276 actcgcttcagatatgaaactttgagtattgagag-atgctcttgttattcccaataaga 218 Query: 208 ttgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaatagtc 267 | || ||| |||||| ||| |||||||| ||||| |||||| |||||||| | || Sbjct: 217 cgactcggtaacagatcgcttcttccaaagcgcgccccattcgttctgctcgcaacaatc 158 Query: 268 cgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgnacttttg 327 | || | ||| || || ||||||||||||||||||| |||||| ||||||| Sbjct: 157 caataagttctccgggtgaaaaaacattagacattccatcttctgaaaccaacacttttg 98 Query: 328 atgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggatc 387 |||||| ||| |||| |||||| |||| ||| |||||||| ||||| ||||| ||||| | Sbjct: 97 atgttatttgacgtacaataatttctagatgcctattatgaatctgcaccccctgggagc 38 Query: 388 gataaaccttttggattttattaaccaaaga 418 ||||||||| ||||||||||||||||||||| Sbjct: 37 gataaacctgttggattttattaaccaaaga 7
>dbj|AB098233.1| Nicotiana tomentosiformis rpoC2 gene for RNA polymerase beta'' subunit, partial cds Length = 329 Score = 212 bits (107), Expect = 1e-51 Identities = 253/303 (83%), Gaps = 1/303 (0%) Strand = Plus / Minus Query: 116 gcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggta 175 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct: 305 gcttttgctaaaactcgagcagtctcttgaaaactcgcttcagatatgaaactttgagta 246 Query: 176 ttcagggnaagcccttgttattcccaataagattgcccgataatagatcgattcatccaa 235 || || | | || ||||||||||||||||||| | || ||| |||||| ||| ||||| Sbjct: 245 ttgagag-atgctcttgttattcccaataagacgactcggtaacagatcgcttcttccaa 187 Query: 236 agctcgccctgctcgttccgctcgcaatagtccgattaattccccaggcnnnnnnncatt 295 ||| ||||| |||||| |||||||| | ||| || | ||| || || |||| Sbjct: 186 agcgcgccccattcgttctgctcgcaacaatccaataagttctccgggtgaaaaaacatt 127 Query: 296 agacattccatcttcggaaacccgnacttttgatgttacttggcgtataataatctctat 355 ||||||||||||||| |||||| ||||||||||||| ||| |||| |||||| ||||| Sbjct: 126 agacattccatcttctgaaaccaacacttttgatgttatttgacgtacaataatttctat 67 Query: 356 atgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaa 415 ||| |||||||| ||||| ||||| ||||| |||||||||| |||||||||||||||||| Sbjct: 66 atgcctattatgaatctgcaccccctgggagcgataaacctgttggattttattaaccaa 7 Query: 416 aga 418 ||| Sbjct: 6 aga 4
>gb|DQ167399.1| Oryza sativa (indica cultivar-group) isolate 93-11 mitochondrion, complete genome Length = 491515 Score = 176 bits (89), Expect = 6e-41 Identities = 147/166 (88%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 298 acattccatcttcggaaacccgnacttttgatgttacttggcgtataataatctctatat 357 ||||||||||||| |||||| ||||||||||||||||| || | ||||||||| |||| Sbjct: 247184 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 247125 Query: 358 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 414 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 247124 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 247065 Query: 415 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 460 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 247064 aagaaatacgactttgggctatggttagctcagctccaataaagaa 247019
>gb|DQ167807.1| Oryza sativa (japonica cultivar-group) isolate PA64S mitochondrion, complete genome Length = 490673 Score = 176 bits (89), Expect = 6e-41 Identities = 147/166 (88%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 298 acattccatcttcggaaacccgnacttttgatgttacttggcgtataataatctctatat 357 ||||||||||||| |||||| ||||||||||||||||| || | ||||||||| |||| Sbjct: 246366 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 246307 Query: 358 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 414 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 246306 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 246247 Query: 415 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 460 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 246246 aagaaatacgactttgggctatggttagctcagctccaataaagaa 246201
>gb|DQ167400.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare mitochondrion, complete genome Length = 490669 Score = 176 bits (89), Expect = 6e-41 Identities = 147/166 (88%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 298 acattccatcttcggaaacccgnacttttgatgttacttggcgtataataatctctatat 357 ||||||||||||| |||||| ||||||||||||||||| || | ||||||||| |||| Sbjct: 246363 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 246304 Query: 358 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 414 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 246303 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 246244 Query: 415 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 460 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 246243 aagaaatacgactttgggctatggttagctcagctccaataaagaa 246198
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome Length = 490520 Score = 176 bits (89), Expect = 6e-41 Identities = 147/166 (88%), Gaps = 3/166 (1%) Strand = Plus / Minus Query: 298 acattccatcttcggaaacccgnacttttgatgttacttggcgtataataatctctatat 357 ||||||||||||| |||||| ||||||||||||||||| || | ||||||||| |||| Sbjct: 246242 acattccatcttctgaaaccaacacttttgatgttacttgacgcacaataatctcgatat 246183 Query: 358 gtctattatggatctgtaccccttgggatcgataaaccttttgga---ttttattaacca 414 ||||||||||||||||||| || ||| ||||| |||||||| ||| | || ||||||| Sbjct: 246182 gtctattatggatctgtactccctggtatcgagaaacctttaggatcttcttcttaacca 246123 Query: 415 aagaaatacgactttgggctatggttagctcagctccaatcaagaa 460 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 246122 aagaaatacgactttgggctatggttagctcagctccaataaagaa 246077
>gb|AC146310.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1082A06, complete sequence Length = 135774 Score = 147 bits (74), Expect = 6e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 514 tcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatttgttccactt 573 ||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 10739 tcctttcgagattcagcgatagtgaatcaattgaacgcgctttgaagatttgttctactt 10798 Query: 574 ttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaactaa 631 ||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct: 10799 ttggaagaccttgcgttatgtcactagatatcgctttctcgtatataaacgtaactaa 10856 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 632 cctatctcccttgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 691 |||||| || ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 11204 cctatcccctttgtaaaggttttgtccataatgaccatgaacagttgctcctgtagtggc 11263 Query: 692 c 692 | Sbjct: 11264 c 11264
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 147 bits (74), Expect = 6e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 514 tcctttcgagattgggggataatgaatcaattgaacgcgcttcaaagatttgttccactt 573 ||||||||||||| | |||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 140797 tcctttcgagattcagcgatagtgaatcaattgaacgcgctttgaagatttgttctactt 140856 Query: 574 ttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaactaa 631 ||||||||||||||||||||||||||||| ||| ||| || ||||||||||||||||| Sbjct: 140857 ttggaagaccttgcgttatgtcactagatatcgctttctcgtatataaacgtaactaa 140914 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 632 cctatctcccttgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 691 |||||| || ||||||||| ||| |||||||||||||| ||||||||||||||||||||| Sbjct: 141262 cctatcccctttgtaaaggttttgtccataatgaccatgaacagttgctcctgtagtggc 141321 Query: 692 c 692 | Sbjct: 141322 c 141322
>emb|AJ391748.1|VME391748 Vicia melanops genomic repetitive element, clone M27 Length = 509 Score = 139 bits (70), Expect = 1e-29 Identities = 219/270 (81%), Gaps = 1/270 (0%) Strand = Plus / Minus Query: 83 cctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaactcgagcagtttct 142 ||||||||||||||||| ||||| || || || |||||||||||||||| |||||||||| Sbjct: 271 cctttcaaccaatcaatacgaccccgaagagcggcttttgctaaaactctagcagtttct 212 Query: 143 tgaaaacttgcttcagatatgaaactttgggtattcagggnaagcccttgttattcccaa 202 |||||||| ||||| |||||||||||||| |||||||| | | | ||||||||||||| Sbjct: 211 tgaaaactcgcttcggatatgaaactttgagtattcagag-atgtttttgttattcccaa 153 Query: 203 taagattgcccgataatagatcgattcatccaaagctcgccctgctcgttccgctcgcaa 262 ||| | || || ||| | || | ||| ||||| || ||||| | |||||| |||||||| Sbjct: 152 taaaaaagctcggtaacaaattggttcttccaaggcacgccccgttcgttctgctcgcaa 93 Query: 263 tagtccgattaattccccaggcnnnnnnncattagacattccatcttcggaaacccgnac 322 || ||| |||| ||| ||||| ||||||||||||||||||| |||||| || Sbjct: 92 taatccaattagttcgccaggtaaaaatacattagacattccatcttctgaaaccaagac 33 Query: 323 ttttgatgttacttggcgtataataatctc 352 ||| ||||||| ||| || | ||||||||| Sbjct: 32 tttggatgttatttgacgcacaataatctc 3
>dbj|D17510.1|PINCPTRPG Pinus thunbergii chloroplast DNA, complete sequence Length = 119707 Score = 133 bits (67), Expect = 8e-28 Identities = 119/135 (88%), Gaps = 1/135 (0%) Strand = Plus / Plus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||||||| ||||||||| |||| |||||||| ||||| || Sbjct: 16390 ttttccttcaagcctttcaaccaatcgatgcgaccttgtagagcagctttagctaagacc 16449 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccct 190 |||||||||||||| ||||| ||||| ||||| |||||||| |||||||| | | ||||| Sbjct: 16450 cgagcagtttcttggaaactcgcttcggatataaaactttgagtattcagag-atgccct 16508 Query: 191 tgttattcccaataa 205 ||||||||| ||||| Sbjct: 16509 tgttattcctaataa 16523 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 373 gtaccccttgggatcgataaaccttttg 400 |||||||||||||||| ||||| ||||| Sbjct: 16691 gtaccccttgggatcggtaaactttttg 16718
>dbj|AP006646.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04I09, TM0269b, complete sequence Length = 66087 Score = 131 bits (66), Expect = 3e-27 Identities = 171/206 (83%) Strand = Plus / Plus Query: 477 agaattcttggtatacgctcattccaatcctcaattctcctttcgagattgggggataat 536 ||||||| || |||||| || |||||| | ||||||||| |||| || || |||| | Sbjct: 51224 agaattcctgttatacgttcgttccaagcatcaattctcttttctaggttcattgatatt 51283 Query: 537 gaatcaattgaacgcgcttcaaagatttgttccacttttggaagaccttgcgttatgtca 596 |||||||| ||||| |||| || | ||||| ||||||||||||||||| ||||| ||| Sbjct: 51284 gaatcaatcgaacgtacttctaatacctgttctacttttggaagaccttgtgttatatca 51343 Query: 597 ctagatctcgatttttcatatataaacgtaactaacctatctcccttgtaaaggatttct 656 | |||||||||||||||||||||||| |||||||| ||||||| | ||||| |||||| Sbjct: 51344 ccagatctcgatttttcatatataaatgtaactaatatatctccttcataaagcatttct 51403 Query: 657 ccataatgaccattaacagttgctcc 682 |||||||| |||| || ||||||||| Sbjct: 51404 ccataatgtccatgaatagttgctcc 51429
>gb|DQ160111.1| Taraxacum officinale TO73-1 (To73-1) mRNA, partial cds Length = 215 Score = 129 bits (65), Expect = 1e-26 Identities = 107/121 (88%) Strand = Plus / Minus Query: 564 tgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaac 623 ||||||||||||||||||||||| ||||| |||| |||||| |||||| |||||||||| Sbjct: 196 tgttccacttttggaagaccttgggttatatcaccagatcttgattttccatatataaat 137 Query: 624 gtaactaacctatctcccttgtaaaggatttctccataatgaccattaacagttgctcct 683 |||||||| ||||||| | |||||||||||| |||||||| |||| ||||||||| ||| Sbjct: 136 gtaactaatgtatctccttcgtaaaggatttccccataatgtccatgaacagttgcgcct 77 Query: 684 g 684 | Sbjct: 76 g 76
>dbj|AP002054.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T15D2 Length = 87219 Score = 129 bits (65), Expect = 1e-26 Identities = 117/133 (87%), Gaps = 1/133 (0%) Strand = Plus / Plus Query: 360 ctattatggatctgtaccccttgggatcgataaaccttttggattttattaaccaaagaa 419 |||||||| |||| |||||||||||||||||||||||||| || |||| |||||||||| Sbjct: 38904 ctattatgaatctacaccccttgggatcgataaaccttttgaatcttat-aaccaaagaa 38962 Query: 420 atacgactttgggctatggttagctcagctccaatcaagaatccccaagggaccccaaga 479 ||||||||||| |||| |||| |||||| ||| |||||||||||||||| | |||||| Sbjct: 38963 atacgactttgcactatagttaactcagcaccactcaagaatccccaaggaattccaaga 39022 Query: 480 attcttggtatac 492 ||||||| ||||| Sbjct: 39023 attcttgttatac 39035 Score = 77.8 bits (39), Expect = 4e-11 Identities = 58/63 (92%), Gaps = 1/63 (1%) Strand = Plus / Plus Query: 117 cttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggtat 176 ||||| |||||||||||||||||| ||||||||||||||| ||||| |||||||| |||| Sbjct: 38673 ctttttctaaaactcgagcagtttattgaaaacttgcttcggatat-aaactttgagtat 38731 Query: 177 tca 179 ||| Sbjct: 38732 tca 38734 Score = 73.8 bits (37), Expect = 7e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 570 acttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaacgtaact 629 |||||||||||||||| ||||| |||| ||||||||||||| ||||||||| |||||| Sbjct: 39113 acttttggaagaccttaggttatatcaccggatctcgattttttatatataaatgtaact 39172 Query: 630 aacctatctcccttgtaaaggatttctccataatgaccattaacagttgctcc 682 || |||| || | |||||| ||||| | |||||| |||| ||| ||||||| Sbjct: 39173 aatgtatccccttcgtaaagaatttcgctataatgcccatgaacttttgctcc 39225
>dbj|AP004576.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N11, TM0177, complete sequence Length = 133589 Score = 127 bits (64), Expect = 5e-26 Identities = 120/139 (86%) Strand = Plus / Minus Query: 292 cattagacattccatcttcggaaacccgnacttttgatgttacttggcgtataataatct 351 |||| |||||||||||||| || ||| ||||||||||||| ||| || | |||||| | Sbjct: 85372 cattcgacattccatcttctgacaccaagacttttgatgttatttgacgaacaataattt 85313 Query: 352 ctatatgtctattatggatctgtaccccttgggatcgataaaccttttggattttattaa 411 | ||||||||||||||||| || || || |||||||||||||| ||||||||||||| | Sbjct: 85312 cgatatgtctattatggatgtgcactccctgggatcgataaactctttggattttattca 85253 Query: 412 ccaaagaaatacgactttg 430 ||||||||||||||||||| Sbjct: 85252 ccaaagaaatacgactttg 85234 Score = 109 bits (55), Expect = 1e-20 Identities = 73/79 (92%) Strand = Plus / Minus Query: 101 cgacctcgtagggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagat 160 |||||||| || || |||||||||||||||| |||||||||||||||||||||||| ||| Sbjct: 85562 cgacctcggagagcggcttttgctaaaactctagcagtttcttgaaaacttgcttcggat 85503 Query: 161 atgaaactttgggtattca 179 ||||||||||| ||||||| Sbjct: 85502 atgaaactttgagtattca 85484
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 125 bits (63), Expect = 2e-25 Identities = 109/124 (87%), Gaps = 4/124 (3%) Strand = Plus / Plus Query: 327 gatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggat 386 ||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| Sbjct: 21024855 gatgttacttggcgtataataatctctatatgtttattatagattcgtacttcttgg--- 21024911 Query: 387 cgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagctca 446 ||||||||||||| || |||||||||||||| |||||||||||||||| ||||| |||| Sbjct: 21024912 -gataaaccttttgaatcttattaaccaaagatatacgactttgggctacggttaactca 21024970 Query: 447 gctc 450 |||| Sbjct: 21024971 gctc 21024974 Score = 107 bits (54), Expect = 5e-20 Identities = 95/106 (89%), Gaps = 2/106 (1%) Strand = Plus / Minus Query: 64 aactacgttttctttcaagcctttcaaccaatcaatgcgacctcgt-agggcagcttttg 122 ||||||||||||||||| ||||||||| |||||||| ||||||||| | || || ||||| Sbjct: 2909642 aactacgttttctttcaggcctttcaatcaatcaatacgacctcgtaaaggtagattttg 2909583 Query: 123 ctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaact 168 || |||| ||||||||||||| |||||||||| ||||||||||||| Sbjct: 2909582 ct-aaacccgagcagtttcttaaaaacttgctccagatatgaaact 2909538 Score = 81.8 bits (41), Expect = 3e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 196 ttcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgtt 252 |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 2909526 ttcccaataagattgctcgataatagattgattcatccaaagcctgccctgctcgtt 2909470
>gb|AY228468.1| Pinus Koraiensis chloroplast, complete genome Length = 116866 Score = 125 bits (63), Expect = 2e-25 Identities = 118/135 (87%), Gaps = 1/135 (0%) Strand = Plus / Plus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||||||| || |||||| |||| |||||||| ||||| || Sbjct: 16066 ttttccttcaagcctttcaaccaatcgatacgaccttgtagagcagctttagctaagacc 16125 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccct 190 |||||||||||||| ||||| ||||| ||||| |||||||| |||||||| | | ||||| Sbjct: 16126 cgagcagtttcttggaaactcgcttcggatataaaactttgagtattcagag-atgccct 16184 Query: 191 tgttattcccaataa 205 ||||||||| ||||| Sbjct: 16185 tgttattcctaataa 16199 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 634 tatctcccttgtaaaggatttctccataatgaccattaacagt 676 ||||||| |||| ||| ||||||||||||||||||| |||||| Sbjct: 16628 tatctcctttgtcaagaatttctccataatgaccatgaacagt 16670 Score = 48.1 bits (24), Expect = 0.039 Identities = 66/80 (82%) Strand = Plus / Plus Query: 321 acttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccct 380 ||||| ||||| | |||||||| ||||||||||||||| ||| | || |||||||| Sbjct: 16315 actttcgatgtcatttggcgtacaataatctctatatgcttatcaccaattcgtacccct 16374 Query: 381 tgggatcgataaaccttttg 400 |||||||| ||||| ||||| Sbjct: 16375 tgggatcggtaaactttttg 16394
>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0431A03 Length = 149500 Score = 125 bits (63), Expect = 2e-25 Identities = 109/124 (87%), Gaps = 4/124 (3%) Strand = Plus / Plus Query: 327 gatgttacttggcgtataataatctctatatgtctattatggatctgtaccccttgggat 386 ||||||||||||||||||||||||||||||||| |||||| ||| |||| ||||| Sbjct: 91030 gatgttacttggcgtataataatctctatatgtttattatagattcgtacttcttgg--- 91086 Query: 387 cgataaaccttttggattttattaaccaaagaaatacgactttgggctatggttagctca 446 ||||||||||||| || |||||||||||||| |||||||||||||||| ||||| |||| Sbjct: 91087 -gataaaccttttgaatcttattaaccaaagatatacgactttgggctacggttaactca 91145 Query: 447 gctc 450 |||| Sbjct: 91146 gctc 91149
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 112 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 171 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5782214 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 5782273 Query: 172 ggta 175 |||| Sbjct: 5782274 ggta 5782277
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAa0021B21, from chromosome 3, complete sequence Length = 139208 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 112 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 171 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 11044 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 11103 Query: 172 ggta 175 |||| Sbjct: 11104 ggta 11107
>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0021B21, from chromosome 3, complete sequence Length = 166777 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Minus Query: 112 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 171 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 48957 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 48898 Query: 172 ggta 175 |||| Sbjct: 48897 ggta 48894
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 119 bits (60), Expect = 1e-23 Identities = 63/64 (98%) Strand = Plus / Plus Query: 112 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 171 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5781427 ggcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcatatatgaaactttg 5781486 Query: 172 ggta 175 |||| Sbjct: 5781487 ggta 5781490
>dbj|AP005672.1| Physcomitrella patens subsp. patens chloroplast DNA, complete genome Length = 122890 Score = 117 bits (59), Expect = 5e-23 Identities = 95/107 (88%) Strand = Plus / Plus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 |||||||| || ||||||| ||||||||| |||||||||| || ||||||||||||||| Sbjct: 67817 ttttcttttaaacctttcagccaatcaattcgacctcgtaatgctgcttttgctaaaact 67876 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtatt 177 |||| ||||||||||||||| ||||| ||||| |||||||| ||||| Sbjct: 67877 cgagtagtttcttgaaaactagcttcggatataaaactttgagtatt 67923
>gb|DQ069542.1| Ginkgo biloba RNA polymerase beta'' chain (rpoC2) gene, partial cds; chloroplast Length = 4125 Score = 109 bits (55), Expect = 1e-20 Identities = 116/135 (85%), Gaps = 1/135 (0%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| ||||||||||||||||||||||| |||||||| || |||||||| || || || Sbjct: 3902 ttttccttcaagcctttcaaccaatcaatacgacctcggagagcagctttagccaagacc 3843 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtattcagggnaagccct 190 ||||||||||| |||||||| ||| | ||||| |||||||| |||| ||| | | ||||| Sbjct: 3842 cgagcagtttcctgaaaactcgctcctgatataaaactttgagtatccagag-atgccct 3784 Query: 191 tgttattcccaataa 205 |||||||||||||| Sbjct: 3783 cgttattcccaataa 3769 Score = 48.1 bits (24), Expect = 0.039 Identities = 66/80 (82%) Strand = Plus / Minus Query: 335 ttggcgtataataatctctatatgtctattatggatctgtaccccttgggatcgataaac 394 |||||||| ||||||||||||||| ||| || || | || ||||||||||| ||||| Sbjct: 3639 ttggcgtacaataatctctatatgcttatcataaattcgcactccttgggatcggtaaac 3580 Query: 395 cttttggattttattaacca 414 |||||| |||| ||| |||| Sbjct: 3579 cttttgaatttgattgacca 3560 Score = 42.1 bits (21), Expect = 2.4 Identities = 90/113 (79%) Strand = Plus / Minus Query: 563 ttgttccacttttggaagaccttgcgttatgtcactagatctcgatttttcatatataaa 622 |||||| ||||| ||||||||||| || | |||| ||| | ||| |||||||||| || Sbjct: 3411 ttgttcaactttaggaagaccttgaattgtatcaccggatttggatctttcatatatcaa 3352 Query: 623 cgtaactaacctatctcccttgtaaaggatttctccataatgaccattaacag 675 || | ||| ||||||| | || ||| | ||||||||||||||||| ||||| Sbjct: 3351 tgttatcaacgtatctccttcgtcaagaaattctccataatgaccatgaacag 3299
>dbj|AP004461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0443G08 Length = 162139 Score = 107 bits (54), Expect = 5e-20 Identities = 95/106 (89%), Gaps = 2/106 (1%) Strand = Plus / Minus Query: 64 aactacgttttctttcaagcctttcaaccaatcaatgcgacctcgt-agggcagcttttg 122 ||||||||||||||||| ||||||||| |||||||| ||||||||| | || || ||||| Sbjct: 82704 aactacgttttctttcaggcctttcaatcaatcaatacgacctcgtaaaggtagattttg 82645 Query: 123 ctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaact 168 || |||| ||||||||||||| |||||||||| ||||||||||||| Sbjct: 82644 ct-aaacccgagcagtttcttaaaaacttgctccagatatgaaact 82600 Score = 81.8 bits (41), Expect = 3e-12 Identities = 53/57 (92%) Strand = Plus / Minus Query: 196 ttcccaataagattgcccgataatagatcgattcatccaaagctcgccctgctcgtt 252 |||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| Sbjct: 82588 ttcccaataagattgctcgataatagattgattcatccaaagcctgccctgctcgtt 82532
>dbj|AP004638.1| Psilotum nudum chloroplast DNA, complete genome Length = 138829 Score = 101 bits (51), Expect = 3e-18 Identities = 81/91 (89%) Strand = Plus / Plus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 |||||||||| |||||||||||||||||| |||||||||| |||||| ||||| ||| Sbjct: 21611 ttttctttcaggcctttcaaccaatcaattcgacctcgtattgcagctcgagctaatact 21670 Query: 131 cgagcagtttcttgaaaacttgcttcagata 161 |||| ||||||||||||||||||||| |||| Sbjct: 21671 cgagtagtttcttgaaaacttgcttccgata 21701
>dbj|AB029695.1| Abies veitchii DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029694.1| Abies sibirica DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 548 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029693.1| Abies sachalinensis DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029692.1| Abies nephrolepis DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029691.1| Abies mariesii DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 518 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029690.1| Abies lasiocarpa DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 518 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029689.1| Abies koreana DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029688.1| Abies homolepis DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029687.1| Abies holophylla DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029686.1| Abies fraseri DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 518 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029685.1| Abies firma DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029684.1| Abies fargesii DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 522 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>dbj|AB029683.1| Abies fabri DNA, rpoC2 gene for RNA polymerase bata-subunit, partial cds, and rpoC2-rps2 intergenic spacer Length = 509 Score = 87.7 bits (44), Expect = 5e-14 Identities = 86/100 (86%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||| |||||||||||||||| ||| || |||||| |||| |||||||| ||||| || Sbjct: 100 ttttccttcaagcctttcaaccgatcgatacgaccttgtagagcagctttagctaagacc 41 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaacttt 170 ||||||||||| || ||||| ||||| ||||| ||||||| Sbjct: 40 cgagcagtttcctggaaactcgcttcggatataaaacttt 1
>gb|AC136501.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0044M15, complete sequence Length = 144568 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 321 acttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccct 380 ||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || Sbjct: 60417 acttttgatgttacttgacgcacaataatctcgatatgtctattatggatctgtactccc 60476 Query: 381 tgggatcga 389 ||| ||||| Sbjct: 60477 tggtatcga 60485
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 321 acttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccct 380 ||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || Sbjct: 10757055 acttttgatgttacttgacgcacaataatctcgatatgtctattatggatctgtactccc 10756996 Query: 381 tgggatcga 389 ||| ||||| Sbjct: 10756995 tggtatcga 10756987 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttttggattttattaaccaaa 416 ||||||||||||||||||||| Sbjct: 24308258 ttttggattttattaaccaaa 24308238
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 81.8 bits (41), Expect = 3e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 321 acttttgatgttacttggcgtataataatctctatatgtctattatggatctgtacccct 380 ||||||||||||||||| || | ||||||||| ||||||||||||||||||||||| || Sbjct: 10836244 acttttgatgttacttgacgcacaataatctcgatatgtctattatggatctgtactccc 10836185 Query: 381 tgggatcga 389 ||| ||||| Sbjct: 10836184 tggtatcga 10836176 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttttggattttattaaccaaa 416 ||||||||||||||||||||| Sbjct: 24619927 ttttggattttattaaccaaa 24619907
>dbj|AB077118.1| Prunus persica mRNA, microsatellite marker MA004b Length = 276 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 409 taaccaaagaaatacgactttgggctatggttagctcagctccaatcaagaatccccaag 468 |||||||||| ||||||||||| |||| ||||||||||| |||||||| |||||||||| Sbjct: 1 taaccaaagagatacgactttgtactatagttagctcagcaccaatcaaaaatccccaag 60 Query: 469 ggaccccaagaattc 483 | | |||||||||| Sbjct: 61 gaattccaagaattc 75
>dbj|AB087420.1| Anthoceros formosae chloroplast rpoC2 mRNA for RNA polymerase beta'' subunit, complete cds Length = 4494 Score = 77.8 bits (39), Expect = 4e-11 Identities = 90/107 (84%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 |||||||| || ||||| ||||| ||||| |||||||| || || ||||| ||||| ||| Sbjct: 4138 ttttcttttaacccttttaaccagtcaattcgacctcgaagagcggctttggctaatact 4079 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtatt 177 || | ||||||||||||||| ||||| ||||| ||||| || ||||| Sbjct: 4078 cgggtagtttcttgaaaactggcttccgatataaaactctgagtatt 4032
>gb|AY178864.1| Adiantum capillus-veneris chloroplast, complete genome Length = 150568 Score = 75.8 bits (38), Expect = 2e-10 Identities = 74/86 (86%) Strand = Plus / Plus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 ||||||||||| || |||| ||||||||| || || || ||||||||||| || || ||| Sbjct: 16022 ttttctttcaaccccttcagccaatcaattcggccgcgaagggcagctttagccaatact 16081 Query: 131 cgagcagtttcttgaaaacttgcttc 156 |||| |||||||||||||||||||| Sbjct: 16082 cgagtggtttcttgaaaacttgcttc 16107
>ref|XM_475052.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1791 Score = 75.8 bits (38), Expect = 2e-10 Identities = 50/54 (92%) Strand = Plus / Minus Query: 628 ctaacctatctcccttgtaaaggatttctccataatgaccattaacagttgctc 681 |||||||||| || |||||||||||||| ||||||||||||| ||||||||||| Sbjct: 1791 ctaacctatcccctttgtaaaggatttccccataatgaccatgaacagttgctc 1738
>emb|X04465.1|CHMPXX Marchantia polymorpha chloroplast genome DNA Length = 121024 Score = 69.9 bits (35), Expect = 1e-08 Identities = 89/107 (83%) Strand = Plus / Minus Query: 71 ttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaaact 130 |||||||| || ||||| ||||| ||||| || ||| || |||||||||||||||||| Sbjct: 15733 ttttcttttaaaccttttaaccagtcaattcggccttttaacgcagcttttgctaaaact 15674 Query: 131 cgagcagtttcttgaaaacttgcttcagatatgaaactttgggtatt 177 | | ||||||||||||||| ||||| || || |||||||| ||||| Sbjct: 15673 cttgtagtttcttgaaaactagcttctgaaataaaactttgagtatt 15627
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 643 tgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 691 |||||||||||| ||||||||||| || ||| ||||||||||||||||| Sbjct: 7731598 tgtaaaggatttatccataatgactatgaacggttgctcctgtagtggc 7731550
>dbj|AP005971.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0079K11 Length = 130082 Score = 65.9 bits (33), Expect = 2e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 643 tgtaaaggatttctccataatgaccattaacagttgctcctgtagtggc 691 |||||||||||| ||||||||||| || ||| ||||||||||||||||| Sbjct: 99160 tgtaaaggatttatccataatgactatgaacggttgctcctgtagtggc 99112
>emb|X70810.2|CLEGCGA Euglena gracilis chloroplast complete genome Length = 143171 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 113 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 171 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 102965 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 103023
>emb|X17191.1|CHEGRPO E.gracilis chloroplast RNA polymerase rpoB-rpoC1-rpoC2 operon Length = 12840 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 113 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 171 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 12749 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 12691
>gb|M22010.1|EGRCPRPS Euglena gracilis chloroplast ribosomal proteins S4 and S11 genes, complete cds, RNA polymerase subunit (rpoC2) gene, 3' end and tRNA genes Length = 3343 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 113 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 171 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 650 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 592
>emb|V00160.1|CHEGTN E. gracilis genes for val, asn, arg and leu tRNAs Length = 1600 Score = 61.9 bits (31), Expect = 3e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 113 gcagcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttg 171 |||||||||| |||||||| || ||||||||||||||| |||| || ||| |||||||| Sbjct: 649 gcagcttttgttaaaactctagtagtttcttgaaaactcgcttgagctataaaactttg 591
>dbj|AB206659.1| Lysichiton camtschatcensis chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 934 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 74 tctttcaagcctttcaaccaatcaatgcgacctcgtag 111 ||||||| |||||||||||||||||| ||||||||||| Sbjct: 896 tctttcaggcctttcaaccaatcaatacgacctcgtag 933
>dbj|AB206662.1| Symplocarpus nabekuraensis chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 932 Score = 54.0 bits (27), Expect = 6e-04 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand = Plus / Plus Query: 21 aatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactacgttttctttca 80 ||||||||| |||||||| |||||||||||||| || ||| || || ||||||| Sbjct: 843 aatttttgg-aatccggtaccaacaggtataatcccccccag-aacaacattctctttca 900 Query: 81 agcctttcaaccaatcaatgcgacctcgtag 111 ||||||||||||||||| ||||||||||| Sbjct: 901 gtcctttcaaccaatcaatacgacctcgtag 931
>dbj|AB206660.1| Symplocarpus foetidus chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 930 Score = 54.0 bits (27), Expect = 6e-04 Identities = 75/91 (82%), Gaps = 2/91 (2%) Strand = Plus / Plus Query: 21 aatttttggnaatccggtnccaacaggtataatnnnnnnnagnaactacgttttctttca 80 ||||||||| |||||||| |||||||||||||| || ||| || || ||||||| Sbjct: 841 aatttttgg-aatccggtaccaacaggtataatcccccccag-aacaacattctctttca 898 Query: 81 agcctttcaaccaatcaatgcgacctcgtag 111 ||||||||||||||||| ||||||||||| Sbjct: 899 gtcctttcaaccaatcaatacgacctcgtag 929
>dbj|AB206661.1| Symplocarpus nipponicus chloroplast rps2, rpoC2 genes for ribosomal protein S2, RNA polymerase beta'' subunit, partial cds Length = 929 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 74 tctttcaagcctttcaaccaatcaatgcgacctcgtag 111 ||||||| ||||||||||||||||| ||||||||||| Sbjct: 891 tctttcagtcctttcaaccaatcaatacgacctcgtag 928
>gb|AF166114.1|AF166114 Mesostigma viride chloroplast DNA, complete genome Length = 118360 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 137 gtttcttgaaaacttgcttcagatatgaaacttt 170 |||||||||||||||||| ||||||| ||||||| Sbjct: 32408 gtttcttgaaaacttgctgcagatataaaacttt 32441
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/41 (92%), Gaps = 1/41 (2%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtat 50 |||| ||||||||||||||| |||||||| ||||||||||| Sbjct: 10259808 aacggtgcacaaatttttgg-aatccggtaccaacaggtat 10259769
>dbj|AP005659.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0649C11 Length = 138870 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/41 (92%), Gaps = 1/41 (2%) Strand = Plus / Minus Query: 10 aacgatgcacaaatttttggnaatccggtnccaacaggtat 50 |||| ||||||||||||||| |||||||| ||||||||||| Sbjct: 64035 aacggtgcacaaatttttgg-aatccggtaccaacaggtat 63996
>gb|U30821.1|CPU30821 Cyanophora paradoxa cyanelle, complete genome Length = 135599 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 116 gcttttgctaaaactcgagcagtttcttgaaaacttgcttcagatatgaaactttgggta 175 |||||||||||||| |||| |||||||| ||||||||| |||| || || ||||| ||| Sbjct: 75461 gcttttgctaaaacacgagttgtttcttggaaacttgctgcagaaataaagctttgagta 75520 Query: 176 tt 177 || Sbjct: 75521 tt 75522
>gb|DQ279899.1| Crithopsis delileana translation initiation factor gene, partial cds Length = 1494 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Minus Query: 6 ggggaacgatgcacaaatttttgg 29 |||||||||||||||||||||||| Sbjct: 571 ggggaacgatgcacaaatttttgg 548
>emb|AJ538942.1|NTA538942 Nicotiana tabacum cDNA-AFLP-fragment BT3-M14-016 Length = 217 Score = 44.1 bits (22), Expect = 0.61 Identities = 28/30 (93%) Strand = Plus / Plus Query: 602 tctcgatttttcatatataaacgtaactaa 631 |||||||||||||||||| || |||||||| Sbjct: 132 tctcgatttttcatatatgaatgtaactaa 161
>gb|AC116875.10| Mus musculus chromosome 8, clone RP24-426B21, complete sequence Length = 188938 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 432 gctatggttagctcagctcca 452 ||||||||||||||||||||| Sbjct: 153544 gctatggttagctcagctcca 153524
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 396 ttttggattttattaaccaaa 416 ||||||||||||||||||||| Sbjct: 109367 ttttggattttattaaccaaa 109347
>gb|AC147000.32| Medicago truncatula clone mth2-124a16, complete sequence Length = 113682 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 645 taaaggatttctccataatgaccat 669 |||||||||||||||||||| |||| Sbjct: 89090 taaaggatttctccataatggccat 89066
>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete sequence Length = 158204 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 132 gagcagtttcttgaaaacttgcttc 156 |||||| |||||||||||||||||| Sbjct: 29539 gagcagcttcttgaaaacttgcttc 29563
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaaa 416 ||||||||||||||||||||| Sbjct: 100731 ttttggattttattaaccaaa 100751
>gb|AY299195.1| Chenopodium rubrum ribosomal protein S2 and ATPase subunit IV bicistronic mRNA, complete cds; nuclear genes for plastid products Length = 2711 Score = 42.1 bits (21), Expect = 2.4 Identities = 51/61 (83%) Strand = Plus / Minus Query: 68 acgttttctttcaagcctttcaaccaatcaatgcgacctcgtagggcagcttttgctaaa 127 ||||||||||| || |||| ||||||||| || || || || || || |||||||||||| Sbjct: 61 acgttttcttttaatccttgcaaccaatcgatacggccccggagagccgcttttgctaaa 2 Query: 128 a 128 | Sbjct: 1 a 1
>ref|NM_166703.1| Drosophila melanogaster epithelial membrane protein CG2727-RC, transcript variant C (emp), mRNA Length = 2378 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 cctcgtagggcagcttttgct 124 ||||||||||||||||||||| Sbjct: 982 cctcgtagggcagcttttgct 962
>ref|NM_166702.1| Drosophila melanogaster epithelial membrane protein CG2727-RB, transcript variant B (emp), mRNA Length = 2256 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 cctcgtagggcagcttttgct 124 ||||||||||||||||||||| Sbjct: 860 cctcgtagggcagcttttgct 840
>ref|NM_079135.2| Drosophila melanogaster epithelial membrane protein CG2727-RA, transcript variant A (emp), mRNA Length = 2284 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 cctcgtagggcagcttttgct 124 ||||||||||||||||||||| Sbjct: 888 cctcgtagggcagcttttgct 868
>gb|AY070494.1| Drosophila melanogaster GH06663 full length cDNA Length = 2994 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 cctcgtagggcagcttttgct 124 ||||||||||||||||||||| Sbjct: 1574 cctcgtagggcagcttttgct 1554
>gb|AC007884.5|AC007884 Drosophila melanogaster, chromosome 2R, region 60F-60F, BAC clone BACR08I14, complete sequence Length = 190616 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 cctcgtagggcagcttttgct 124 ||||||||||||||||||||| Sbjct: 138408 cctcgtagggcagcttttgct 138428
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 ccctgctcgttccgctcgcaa 262 ||||||||||||||||||||| Sbjct: 3482790 ccctgctcgttccgctcgcaa 3482770
>gb|AE003465.3| Drosophila melanogaster chromosome 2R, section 72 of 73 of the complete sequence Length = 343833 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 cctcgtagggcagcttttgct 124 ||||||||||||||||||||| Sbjct: 290712 cctcgtagggcagcttttgct 290732
>gb|BT001535.1| Drosophila melanogaster RE08130 full insert cDNA Length = 2296 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 cctcgtagggcagcttttgct 124 ||||||||||||||||||||| Sbjct: 888 cctcgtagggcagcttttgct 868
>emb|X73332.1|DMEMP D.melanogaster emp mRNA Length = 2291 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 cctcgtagggcagcttttgct 124 ||||||||||||||||||||| Sbjct: 886 cctcgtagggcagcttttgct 866
>gb|AY363680.1| Yersinia aldovae urease gene locus, and Yut (yut) genes, complete cds Length = 7232 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 ttttattaaccaaagaaata 422 |||||||||||||||||||| Sbjct: 2726 ttttattaaccaaagaaata 2707
>gb|AC005249.2| Homo sapiens BAC clone GS1-115J1 from 7, complete sequence Length = 162531 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tttcttgaaaacttgcttca 157 |||||||||||||||||||| Sbjct: 118236 tttcttgaaaacttgcttca 118255
>gb|AC004903.2| Homo sapiens PAC clone RP5-828B12 from 7, complete sequence Length = 118869 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 8177 ttttggattttattaaccaa 8158
>gb|AC145519.1| Pan troglodytes BAC clone RP43-32M13 from 7, complete sequence Length = 155340 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 tttcttgaaaacttgcttca 157 |||||||||||||||||||| Sbjct: 57713 tttcttgaaaacttgcttca 57732
>gb|AC142284.1| Pan troglodytes BAC clone RP43-163P11 from 7, complete sequence Length = 171686 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 129713 ttttggattttattaaccaa 129694
>emb|AL033530.1|HS629A15 Human DNA sequence from clone RP4-629A15 on chromosome 1p31.1-31.3 Contains EST, complete sequence Length = 93643 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 560 gatttgttccacttttggaa 579 |||||||||||||||||||| Sbjct: 84176 gatttgttccacttttggaa 84195
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16, complete sequence Length = 145739 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 105847 ttttggattttattaaccaa 105866
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 6482744 ttttggattttattaaccaa 6482763
>gb|AC108037.3| Homo sapiens BAC clone RP11-168E17 from 4, complete sequence Length = 73477 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ataatctctatatgtctatt 364 |||||||||||||||||||| Sbjct: 8980 ataatctctatatgtctatt 8961
>gb|AC016647.7| Homo sapiens chromosome 16 clone RP11-89G14, complete sequence Length = 160358 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ctacgttttctttcaagcct 85 |||||||||||||||||||| Sbjct: 108631 ctacgttttctttcaagcct 108612
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017C12 Length = 135356 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 70542 ttttggattttattaaccaa 70561
>dbj|AP003963.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1779_B07 Length = 151427 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 139311 ttttggattttattaaccaa 139330
>dbj|AP003805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1080_F08 Length = 94139 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 396 ttttggattttattaaccaa 415 |||||||||||||||||||| Sbjct: 39833 ttttggattttattaaccaa 39852
>emb|AL132952.1|CEY51H4A Caenorhabditis elegans YAC Y51H4A, complete sequence Length = 269619 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 tttgctaaaactcgagcagtttct 142 |||| ||||||||||||||||||| Sbjct: 46250 tttgttaaaactcgagcagtttct 46227 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 119 tttgctaaaactcgagcagtttct 142 |||| ||||||||||||||||||| Sbjct: 43012 tttgttaaaactcgagcagtttct 42989
>gb|AC087362.13| Homo sapiens chromosome 8, clone RP11-513D5, complete sequence Length = 142170 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 ttttattaaccaaagaaata 422 |||||||||||||||||||| Sbjct: 56911 ttttattaaccaaagaaata 56930
>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome Length = 191952 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 agtttcttgaaaacttgcttcaga 159 ||||||||||||||||||| |||| Sbjct: 49857 agtttcttgaaaacttgctgcaga 49880 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,065,789 Number of Sequences: 3902068 Number of extensions: 5065789 Number of successful extensions: 90178 Number of sequences better than 10.0: 164 Number of HSP's better than 10.0 without gapping: 167 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 88769 Number of HSP's gapped (non-prelim): 1280 length of query: 692 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 669 effective length of database: 17,143,297,704 effective search space: 11468866163976 effective search space used: 11468866163976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
