ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1n08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b 39 0.015
2RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c 38 0.025
3RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-bindin... 37 0.032
4BGB_DROME (Q24040) Protein big brother 30 4.0
5DFRA_SYNY3 (P73212) Putative dihydroflavonol-4-reductase (EC 1.1... 29 8.8
6RIMM_LACJO (Q74IQ5) Probable 16S rRNA-processing protein rimM 29 8.8

>RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b|
          Length = 217

 Score = 38.5 bits (88), Expect = 0.015
 Identities = 21/40 (52%), Positives = 26/40 (65%)
 Frame = -2

Query: 587 ENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKLSV 468
           ENCK F     E+AES  ++E  ES + S  AGLLEKL+V
Sbjct: 146 ENCKAFMQKFKEVAES--EEEKEESKDASDTAGLLEKLTV 183



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>RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c|
          Length = 219

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 21/40 (52%), Positives = 25/40 (62%)
 Frame = -2

Query: 587 ENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKLSV 468
           ENCK F +   EIAES  +    ES +G  AAGL+E LSV
Sbjct: 143 ENCKTFMEKFTEIAES--QQVGKESTQGDEAAGLIENLSV 180



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>RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-binding protein|
           siRanBP)
          Length = 228

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = -2

Query: 587 ENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKLSV 468
           ENCK F     E+AES  ++E  ES + +  AGLLEKL+V
Sbjct: 144 ENCKTFMQKFKEVAES--EEEKEESKDAADTAGLLEKLTV 181



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>BGB_DROME (Q24040) Protein big brother|
          Length = 213

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -2

Query: 197 HLSIYCYM*NICSQYRGWL----LDGVVLLLSRTRNVVHE 90
           H+  Y  M  +C ++RGW+    LDGV  L    R  +HE
Sbjct: 120 HIKSYFIMNGVCVRFRGWIDLERLDGVGCLEYDERRAMHE 159



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>DFRA_SYNY3 (P73212) Putative dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)|
           (Dihydrokaempferol 4-reductase)
          Length = 343

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = -1

Query: 447 KRSKGGIIQGDRNQSRDNPLRVVGRAAHIRTVLLSFCSVARVSLWVLPVDGSW*SLPMTY 268
           +R K  + +GDR       + + G  AH+ T+         V LW          LP+T+
Sbjct: 227 QRGKTALTRGDRYILGHENISLQGILAHLSTITGLPAPKNTVPLW----------LPLTF 276

Query: 267 AENFETVRRCLEQSPSSPPLGV 202
           A   E V   L +SPS P  GV
Sbjct: 277 AWVEEKVLAPLGRSPSVPMDGV 298



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>RIMM_LACJO (Q74IQ5) Probable 16S rRNA-processing protein rimM|
          Length = 173

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 83  LNTHGLHFEFSTKARQHHPKANLDTASRYFTYNNK 187
           L+ HGL  E    A    P+  L T SR F  NNK
Sbjct: 11  LSPHGLKGEVKVNATTDFPEERLATGSRLFIKNNK 45


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,487,421
Number of Sequences: 219361
Number of extensions: 1455893
Number of successful extensions: 3781
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3778
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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