ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd2c04 |
|---|---|
| Clone Library Name | barley_pub |
>PUB14_ARATH (Q8VZ40) E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box| domain protein 14) Length = 632 Score = 166 bits (419), Expect = 7e-41 Identities = 84/144 (58%), Positives = 106/144 (73%) Frame = -1 Query: 614 GAQEARKMRQRQIFNLCIYQGNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGN 435 G + +K IFNLCIYQGNK RAVK GI+ L L D GGM+DEAL +L+IL+ N Sbjct: 481 GTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTN 540 Query: 434 QEGKAVITQSEPMPPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKE 255 QEGK I ++E +P L+E++RTGSPRNRENAAAIL LC + E+ A+ G + ALKE Sbjct: 541 QEGKTAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKE 600 Query: 254 LSETGTDRAKRKASSLLELMRQSE 183 L+E GTDRAKRKA+SLLEL++Q+E Sbjct: 601 LTENGTDRAKRKAASLLELIQQTE 624 Score = 62.4 bits (150), Expect = 1e-09 Identities = 46/138 (33%), Positives = 68/138 (49%) Frame = -1 Query: 617 AGAQEARKMRQRQIFNLCIYQGNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAG 438 A A E R + +R + N+V +AG I L+ L P + ++T L L+ Sbjct: 364 AAAGELRLLAKRNV-------DNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSI 416 Query: 437 NQEGKAVITQSEPMPPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALK 258 N+ K I + + ++EV++ GS RENAAA L SL D E +A AG AL Sbjct: 417 NEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVID-ENKVAIGAAGAIQALI 475 Query: 257 ELSETGTDRAKRKASSLL 204 L E GT R K+ A++ + Sbjct: 476 SLLEEGTRRGKKDAATAI 493
>SPL11_ORYSA (Q64HA9) Spotted leaf protein 11 (Spotted leaf11) (Cell| death-related protein SPL11) Length = 694 Score = 137 bits (345), Expect = 3e-32 Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%) Frame = -1 Query: 614 GAQEARKMRQRQIFNLCIYQGNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGN 435 G+Q +K +FNLCIYQGNK RA++AG++ +M + +PTG ++DEA+ +LSIL+ + Sbjct: 503 GSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSH 562 Query: 434 QEGKAVITQSEPMPPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKV--AGGEDAL 261 EGKA I +EP+P L+E++ +G+PRNRENAAA++L LCS + A+ G L Sbjct: 563 PEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPL 622 Query: 260 KELSETGTDRAKRKASSLLELM 195 +EL+ GTDR KRKA LLE M Sbjct: 623 RELALNGTDRGKRKAVQLLERM 644 Score = 52.4 bits (124), Expect = 1e-06 Identities = 38/116 (32%), Positives = 59/116 (50%) Frame = -1 Query: 551 NKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGNQEGKAVITQSEPMPPLIEVVR 372 N++ +AG I L++ L + A+T L L+ +++ KA I S +P ++ V++ Sbjct: 401 NRICIAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLK 460 Query: 371 TGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSETGTDRAKRKASSLL 204 GS RENAAA L SL D E + G AL L G+ R K+ A++ L Sbjct: 461 NGSMEARENAAATLFSLSVID-EYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAAL 515 Score = 42.4 bits (98), Expect = 0.001 Identities = 31/128 (24%), Positives = 60/128 (46%) Frame = -1 Query: 578 IFNLCIYQGNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGNQEGKAVITQSEP 399 + NL I++ NK + +G + +++ L + + + A L L+ E K I Sbjct: 433 LLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMGA 492 Query: 398 MPPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSETGTDRAKRK 219 +P L+ ++ GS R +++AAA L +LC + A + AG + L T + Sbjct: 493 IPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIR-AGLVPLIMGLVTNPTGALMDE 551 Query: 218 ASSLLELM 195 A ++L ++ Sbjct: 552 AMAILSIL 559
>RIF1_HUMAN (Q5UIP0) Telomere-associated protein RIF1 (Rap1-interacting factor| 1 homolog) Length = 2472 Score = 40.4 bits (93), Expect = 0.004 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 7/97 (7%) Frame = -1 Query: 512 LMNFLVDPT---GGMIDEALTLLSILAGNQEGKAVITQSE-PMPPLIEVVRTG-SPRNRE 348 L+ L DP+ GG D LTL S + G +EGK VIT+ E +P L +V++T S +N E Sbjct: 12 LLETLEDPSASHGGQTDAYLTLTSRMTG-EEGKEVITEIEKKLPRLYKVLKTHISSQNSE 70 Query: 347 NAAAIL--LSLCSADAEQTMAAKVAGGEDALKELSET 243 ++A L L C + + T A + L +L++T Sbjct: 71 LSSAALQALGFCLYNPKITSELSEANALELLSKLNDT 107
>IMA1_SCHPO (O14063) Importin alpha subunit (Karyopherin alpha subunit)| (Serine-rich RNA polymerase I suppressor protein) (Cell untimely torn protein 15) Length = 542 Score = 35.0 bits (79), Expect = 0.18 Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Frame = -1 Query: 536 VKAGIITHLMNFLVDPTGGMIDEAL-TLLSILAGNQEGKAVITQSEPMPPLIEVVRTGSP 360 + G ++ L++ L P G+ EA T+ +I AGN + ++ +PPLI ++ T Sbjct: 329 INCGALSALLSLLSSPRDGVRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLLTTADF 388 Query: 359 RNRENAAAILLSLCSADAEQTMAAKVAGGEDALKEL 252 + ++ A + + S A + + + A+K L Sbjct: 389 KIQKEACWAISNATSGGARRPDQIRYLVEQGAIKPL 424
>IMA1_YEAST (Q02821) Importin alpha subunit (Karyopherin alpha subunit)| (Serine-rich RNA polymerase I suppressor protein) Length = 542 Score = 32.3 bits (72), Expect = 1.1 Identities = 23/110 (20%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Frame = -1 Query: 563 IYQGNKVRA---VKAGIITHLMNFLVDPTGGMIDEAL-TLLSILAGNQEGKAVITQSEPM 396 I GN ++ + AG++ L L P + EA T+ +I AGN E + + + Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385 Query: 395 PPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSE 246 PPL++++ + ++ A + + S ++ + + +K L + Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCD 435
>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2| Length = 1484 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = -1 Query: 440 GNQEGKAVITQSEPMPPL-IEVVRTGSPRNRENAAAILLSLCSADAEQTMAAK 285 G EG + P PPL + R SP+ RE L S CS A+ A K Sbjct: 988 GTSEGVYLTQLPHPTPPLQTDCTRQSSPQERETVGPELKSSCSESADNCKAMK 1040
>PRP45_KLULA (Q6CLJ7) Pre-mRNA-splicing factor PRP45 (Pre-mRNA-processing| protein 45) Length = 430 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/69 (27%), Positives = 35/69 (50%) Frame = -1 Query: 386 IEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSETGTDRAKRKASSL 207 IE ++T P N + +LLS +AE+ ++ ++A KEL + T + +++ L Sbjct: 197 IESIKTDCPDNDKKDNFLLLSEALDEAEREARQRINIKQEAYKELEKEETLKKEQRLRHL 256 Query: 206 LELMRQSED 180 E RQ + Sbjct: 257 AERARQDRE 265
>CTNB_TRIGR (P35223) Beta-catenin| Length = 820 Score = 31.6 bits (70), Expect = 1.9 Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 1/113 (0%) Frame = -1 Query: 578 IFNLCIYQGNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGNQEG-KAVITQSE 402 + NL ++ ++ K+G I L+ L P ++ A+T L L +QEG K + + Sbjct: 234 LHNLSHHRAGLLQIFKSGGIPALIKLLSSPVESVLFYAITTLHNLLLHQEGSKMAVRLAG 293 Query: 401 PMPPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSET 243 + ++ ++ +P+ L L + E + +GG AL + T Sbjct: 294 GLQKMVALLSRNNPKFLAITTDCLQILAYGNQESKLIILASGGPAALVHIMRT 346
>GLMM_CAUCR (Q9ABV3) Phosphoglucosamine mutase (EC 5.4.2.10)| Length = 448 Score = 30.8 bits (68), Expect = 3.3 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 4/100 (4%) Frame = -1 Query: 515 HLMNFLVDPTGGMIDEALTLLSILAGNQEGKAVI-TQSEPMPPLIEVVRTGSPRNRENAA 339 HL+ TG + AL +L+++ + + + Q EP+P L+E VR + E AA Sbjct: 334 HLILSDFSTTGDGLIAALQVLAVMVETDKPMSALGRQFEPVPQLLENVRFVGGKPLE-AA 392 Query: 338 AILLSLCSADAEQTMAAKV---AGGEDALKELSETGTDRA 228 A+ ++ +A+ A ++ A G + L + G D A Sbjct: 393 AVKEAIADGEAQLNGAGRIVVRASGTEPLIRIMAEGDDPA 432
>VGLB_HCMVA (P06473) Glycoprotein B precursor| Length = 906 Score = 30.8 bits (68), Expect = 3.3 Identities = 25/80 (31%), Positives = 38/80 (47%) Frame = -1 Query: 401 PMPPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSETGTDRAKR 222 P PP + P E A +LL+L DAEQ G D+L +TGT + K Sbjct: 825 PGPPSSDASTAAPPYTNEQAYQMLLALARLDAEQRAQ---QNGTDSLD--GQTGT-QDKG 878 Query: 221 KASSLLELMRQSEDA*RFLE 162 + +LL+ +R ++ R L+ Sbjct: 879 QKPNLLDRLRHRKNGYRHLK 898
>RTDR1_HUMAN (Q9UHP6) Rhabdoid tumor deletion region protein 1| Length = 348 Score = 30.8 bits (68), Expect = 3.3 Identities = 24/99 (24%), Positives = 40/99 (40%) Frame = -1 Query: 608 QEARKMRQRQIFNLCIYQGNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGNQE 429 Q R R + N+ I + K + +I L++ L DP + A L E Sbjct: 204 QNIRSKAARALLNVSISREGKKQVCHFDVIPILVHLLKDPVEHVKSNAAGALMFATVITE 263 Query: 428 GKAVITQSEPMPPLIEVVRTGSPRNRENAAAILLSLCSA 312 GK +++ + L+E++ + R NA L L A Sbjct: 264 GKYAALEAQAIGLLLELLHSPMTIARLNATKALTMLAEA 302 Score = 29.6 bits (65), Expect = 7.4 Identities = 28/136 (20%), Positives = 61/136 (44%) Frame = -1 Query: 569 LCIYQGNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGNQEGKAVITQSEPMPP 390 LC+ Q + A+ + ++ L L+ + +A L ++ ++EGK + + +P Sbjct: 177 LCL-QEDATEALGSNVVLVLKQKLLSANQNIRSKAARALLNVSISREGKKQVCHFDVIPI 235 Query: 389 LIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSETGTDRAKRKASS 210 L+ +++ + NAA L+ + E AA A L EL + A+ A+ Sbjct: 236 LVHLLKDPVEHVKSNAAGALM-FATVITEGKYAALEAQAIGLLLELLHSPMTIARLNATK 294 Query: 209 LLELMRQSEDA*RFLE 162 L ++ ++ + + L+ Sbjct: 295 ALTMLAEAPEGRKALQ 310
>VGLB_HCMVT (P13201) Glycoprotein B precursor [Contains: Glycoprotein GP55]| Length = 907 Score = 30.4 bits (67), Expect = 4.3 Identities = 25/80 (31%), Positives = 38/80 (47%) Frame = -1 Query: 401 PMPPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSETGTDRAKR 222 P PP + P E A +LL+L DAEQ G D+L +TGT + K Sbjct: 826 PGPPSSDASTAAPPYTNEQAYQMLLALVRLDAEQRAQ---QNGTDSLD--GQTGT-QDKG 879 Query: 221 KASSLLELMRQSEDA*RFLE 162 + +LL+ +R ++ R L+ Sbjct: 880 QKPNLLDRLRHRKNGYRHLK 899
>YDT2_SCHPO (O14207) Hypothetical protein C6B12.02c in chromosome I| Length = 1888 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +1 Query: 382 SISGGIGSDCVITALPSWLPARIDKRVSASSIMPPVGSTKKFIRW 516 ++ G SD IT+ S P + R ASS PP+ ST +F R+ Sbjct: 146 TVPHGFSSDRSITSKSSHKPVNVIVRNRASSRKPPLTSTHRFRRY 190
>IMA5_HUMAN (O15131) Importin alpha-6 subunit (Karyopherin alpha-5 subunit)| Length = 536 Score = 30.0 bits (66), Expect = 5.7 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = -1 Query: 512 LMNFLVDPTGGMIDEAL-TLLSILAGNQEGKAVITQSEPMPPLIEVVRTGSPRNRENAAA 336 L++ L P + EA T+ +I AGN+ + + P LIE+++ R R+ AA Sbjct: 341 LLHLLSSPKESIRKEACWTVSNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAW 400 Query: 335 ILLSLCSADAEQTMAAKVAGG 273 + + S + + VA G Sbjct: 401 AITNATSGGTPEQIRYLVALG 421
>SYA_THIFE (Q56273) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 877 Score = 30.0 bits (66), Expect = 5.7 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Frame = -1 Query: 554 GNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGNQEG--KAVITQSEPMPPLIE 381 G++VR V+ G +F ++ GG EAL + + E A I + E + + Sbjct: 651 GDEVRVVRMG------DFSMELCGGTHVEALGDIGVFKILSESGVAAGIRRIEAVTGAVA 704 Query: 380 VVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSETGTDRAKRKASSL 207 + R AAA LL + A+ +Q +A + KEL + D A R + L Sbjct: 705 LEAIQRDEERLQAAAGLLKVAPAELDQRLAQTLERLRQLEKELEKVKRDEAVRAGAGL 762
>PLAK_PIG (Q8WNW3) Junction plakoglobin| Length = 745 Score = 29.6 bits (65), Expect = 7.4 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Frame = -1 Query: 578 IFNLCIYQGNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGNQEG-KAVITQSE 402 + NL ++ + K+G I L+ L P ++ A+T L L QEG K + ++ Sbjct: 209 LHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLAD 268 Query: 401 PMPPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKEL 252 + ++ ++ +P+ L L + E + GG AL ++ Sbjct: 269 GLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQI 318
>PLAK_BOVIN (Q8SPJ1) Junction plakoglobin (Desmoplakin III)| Length = 745 Score = 29.6 bits (65), Expect = 7.4 Identities = 24/110 (21%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Frame = -1 Query: 578 IFNLCIYQGNKVRAVKAGIITHLMNFLVDPTGGMIDEALTLLSILAGNQEG-KAVITQSE 402 + NL ++ + K+G I L+ L P ++ A+T L L QEG K + ++ Sbjct: 209 LHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLAD 268 Query: 401 PMPPLIEVVRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKEL 252 + ++ ++ +P+ L L + E + GG AL ++ Sbjct: 269 GLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQI 318
>PIF3_ARATH (O80536) Phytochrome-interacting factor 3 (Phytochrome-associated| protein 3) (Basic helix-loop-helix protein 8) (bHLH8) (AtbHLH008) Length = 524 Score = 29.6 bits (65), Expect = 7.4 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Frame = -1 Query: 389 LIEVVRTGSPRNRENAAAILLSLCSAD--AEQTMAAKVAGGEDALKELSETGTDRAKRKA 216 L E V + +P++ + A I C D +E+ + G ++L SE+ + KRK Sbjct: 247 LNESVASATPKDNQKACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPSLSLKRKH 306 Query: 215 SSLLELMRQSED 180 S++ ++ SED Sbjct: 307 SNIQDIDCHSED 318
>IMA7_HUMAN (O60684) Importin alpha-7 subunit (Karyopherin alpha-6)| Length = 536 Score = 29.3 bits (64), Expect = 9.7 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = -1 Query: 512 LMNFLVDPTGGMIDEAL-TLLSILAGNQEGKAVITQSEPMPPLIEVVRTGSPRNRENAAA 336 L++ L P + EA T+ +I AGN+ + + P LIE+++ R R+ AA Sbjct: 341 LLHLLSSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAW 400 Query: 335 ILLSLCSADAEQTMAAKVAGG 273 + + S + + V+ G Sbjct: 401 AITNATSGGTPEQIRYLVSLG 421
>PK2L1_HUMAN (Q9P0L9) Polycystic kidney disease 2-like 1 protein (Polycystin-L)| (Polycystin-2 homolog) Length = 805 Score = 29.3 bits (64), Expect = 9.7 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = -3 Query: 546 GP-GGESWNHHPSDELLGGSYWG 481 GP G +W +H DEL G S+WG Sbjct: 238 GPFNGTAWTYHSQDELGGFSHWG 260
>U3IP2_MOUSE (Q91WM3) U3 small nucleolar RNA-interacting protein 2 (U3 small| nucleolar ribonucleoproptein-associated 55-kDa protein) (U3 snoRNP-associated 55-kDa protein) (U3-55K) Length = 475 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/66 (27%), Positives = 30/66 (45%) Frame = -1 Query: 377 VRTGSPRNRENAAAILLSLCSADAEQTMAAKVAGGEDALKELSETGTDRAKRKASSLLEL 198 V + + R + + S+D+E A E+ +EL ET ++ R A LE Sbjct: 30 VDSAADRGKSKGGGKMNEEISSDSESESLAPRKTEEEEEEELEETAQEKKLRLAKLYLEQ 89 Query: 197 MRQSED 180 +RQ E+ Sbjct: 90 LRQQEE 95
>PRTP_MCMVS (P30674) Probable processing and transport protein (Infected cell| protein 18.5) Length = 798 Score = 29.3 bits (64), Expect = 9.7 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 11/107 (10%) Frame = -1 Query: 464 LTLLSILAGNQEGKAVITQSEPMPPLIEVVRTGSPRNRENAAAILL---------SLCSA 312 L L + G++ G +I P PLI +R G R +LL +L A Sbjct: 682 LALWRVEDGDEIGDGIILTYNPESPLI--LRRGDRSYRSRDLYLLLYKHLSVDSETLADA 739 Query: 311 DAEQTMA--AKVAGGEDALKELSETGTDRAKRKASSLLELMRQSEDA 177 + ++A +V ++ S T + KRK SLLEL+R + A Sbjct: 740 GSRASVADLCQVERPGPIAEQRSSTQNVKKKRKRMSLLELVRDVDGA 786
>TAOK1_RAT (O88664) Serine/threonine-protein kinase TAO1 (EC 2.7.11.1)| (Thousand and one amino acid protein 1) Length = 1001 Score = 29.3 bits (64), Expect = 9.7 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = -3 Query: 543 PGGESWNHHPSDELLGGSYWGHD**GT 463 PG SW+H+P+ G +WGH GT Sbjct: 905 PGASSWSHNPTGG--SGPHWGHPMGGT 929 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,531,425 Number of Sequences: 219361 Number of extensions: 1896608 Number of successful extensions: 4817 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4664 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4814 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
