>RNC_MYCS5 (Q4A589) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 231

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -3

Query: 351 DSCVGYIIADIVVLEFNQYTPG--SRWRQSLVNR 256
           DS VG++I+D  V EF+   PG  SR R  LV++
Sbjct: 56  DSLVGFLISDYCVREFSSLEPGELSRLRSKLVDK 89

>FAAH_MOUSE (O08914) Fatty-acid amide hydrolase (EC 3.1.-.-) (Oleamide|
           hydrolase) (Anandamide amidohydrolase)
          Length = 579

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 172 LGDFVLVLELP--YSTVESIALVAFFPVVLSIYQGLPPSRARRVLIELQH 315
           LGD VLVL+LP  +  + S  L   FP + +    + P  A + L ELQH
Sbjct: 401 LGDLVLVLKLPRWFKKLLSFLLKPLFPRLAAFLNSMCPRSAEK-LWELQH 449

>IRS1_RAT (P35570) Insulin receptor substrate 1 (IRS-1) (pp185)|
          Length = 1235

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 200 SSKTRTKSPSGSSYGQQIPWNNGI 129
           SS + + +PSGSSYG+  PW NG+
Sbjct: 677 SSSSISAAPSGSSYGK--PWTNGV 698

>IRS1_MOUSE (P35569) Insulin receptor substrate 1 (IRS-1)|
          Length = 1233

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 200 SSKTRTKSPSGSSYGQQIPWNNGI 129
           SS + + +PSGSSYG+  PW NG+
Sbjct: 677 SSSSISAAPSGSSYGK--PWTNGV 698

>RPOC_LEPIN (Q8F0S3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1404

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = -3

Query: 204 RKLQDKDEISKWKQLWPTDTLE*RDYSAVIDSSIKLANWHAFPLIPPVLPPSATPSVQV 28
           +K+QDKD+IS  + L   + LE     A  DS  +   W    ++P V+PP   P VQ+
Sbjct: 193 QKIQDKDKISDKRILKRLEVLE-----AFRDSGNR-PEWMVLDIVP-VIPPELRPMVQL 244

>RPOC_LEPIC (Q72UA7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1404

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = -3

Query: 204 RKLQDKDEISKWKQLWPTDTLE*RDYSAVIDSSIKLANWHAFPLIPPVLPPSATPSVQV 28
           +K+QDKD+IS  + L   + LE     A  DS  +   W    ++P V+PP   P VQ+
Sbjct: 193 QKIQDKDKISDKRILKRLEVLE-----AFRDSGNR-PEWMVLDIVP-VIPPELRPMVQL 244

>DNM3A_HUMAN (Q9Y6K1) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)|
           (Dnmt3a) (DNA methyltransferase HsaIIIA) (DNA MTase
           HsaIIIA) (M.HsaIIIA)
          Length = 909

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 241 RRQRERWILRWNKEAPRQGRNLQ-VEAAMANRYPG 140
           +R+R+ W+ RW +EA ++ + +  + A   N+ PG
Sbjct: 197 KRKRDEWLARWKREAEKKAKVIAGMNAVEENQGPG 231

>CSK2B_DROME (P08182) Casein kinase II subunit beta (CK II beta)|
          Length = 235

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 228 SRCLLPCGPFDLPGTASISSQACID*TPAPRCLQ*YTPHKS 350
           S+ +LP G  D+PG A +        T  P+C+  YTP  S
Sbjct: 116 SQPMLPLGLSDIPGEAMVK-------TYCPKCIDVYTPKSS 149

>CD44_PAPHA (P14745) CD44 antigen precursor (Phagocytic glycoprotein I) (PGP-1)|
           (HUTCH-I) (Extracellular matrix receptor-III) (ECMR-III)
           (GP90 lymphocyte homing/adhesion receptor) (Hermes
           antigen) (Hyaluronate receptor)
          Length = 362

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = -1

Query: 281 DGGSPW*IERTTGKKATRAMDSTVE*GSSKTRTKSPS-GSSYGQQIPWNNGIIQPLLTPQ 105
           D   PW  + T    ATR   +    G S T   S S G S+G +    N    PL TPQ
Sbjct: 207 DEDGPWITDSTDRTPATRDQGAFDPSGGSHTTHGSESAGHSHGSREGGANTTSGPLRTPQ 266

Query: 104 -SSWLI 90
              WLI
Sbjct: 267 IPEWLI 272

>SYTL1_HUMAN (Q8IYJ3) Synaptotagmin-like protein 1 (Exophilin-7) (JFC1 protein)|
           (SB146)
          Length = 562

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -1

Query: 191 TRTKSPSGSSYGQQIPWNNG------IIQPLLTPQSSWLIGM 84
           TR    +GSSYG Q+PW +       + Q LL     W+ G+
Sbjct: 510 TRLSLGTGSSYGLQVPWMDSTPEEKQLWQALLEQPCEWVDGL 551

>RAG1_ONCMY (Q91187) V(D)J recombination-activating protein 1 (RAG-1)|
          Length = 1073

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 183 RPCLGASLFHRRIHRSRCLLPCGPFDLPGTA 275
           R C+   ++    H   C LPCGP DL   A
Sbjct: 331 RSCIAKYIYSLGPHCPACTLPCGPADLTAPA 361

>TNFA_PAPAN (P59695) Tumor necrosis factor precursor (TNF-alpha) (Tumor|
           necrosis factor ligand superfamily member 2) (TNF-a)
           (Cachectin) [Contains: Tumor necrosis factor, membrane
           form; Tumor necrosis factor, soluble form]
          Length = 233

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -2

Query: 286 LEMEAVPGKSKGPQGRRQRERWILR 212
           L  EA+P K+ GPQG   R RW LR
Sbjct: 12  LAEEALPRKTAGPQG--SRRRWFLR 34

>ALG10_YEAST (P50076) Alpha-1,2 glucosyltransferase ALG10 (EC 2.4.1.-)|
           (Alpha-2-glucosyltransferase ALG10)
           (Dolichyl-phosphoglucose-dependent glucosyltransferase
           ALG10) (Asparagine-linked glycosylation protein 10)
          Length = 525

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +1

Query: 136 LFQGICWP*LLPLGDFVLVLELPYSTVESIALVAFFPVVLSIYQ 267
           LF    W  +L L     VL LP+  V+SI L AFF  V  +++
Sbjct: 170 LFYTDVWSTILILQSLSCVLTLPFGPVKSIWLSAFFAGVSCLFR 213

>SYTL1_MOUSE (Q99N80) Synaptotagmin-like protein 1 (Exophilin-7)|
          Length = 567

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = -1

Query: 191 TRTKSPSGSSYGQQIPWNNG------IIQPLLTPQSSWLIGM 84
           TR    +GSSYG Q+PW +       + Q LL     W+ G+
Sbjct: 515 TRLSLGTGSSYGLQVPWMDSTPEEKQLWQTLLERPCEWVDGL 556

>SYFB_HUMAN (Q9NSD9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 589

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -2

Query: 355 YRLLCGVYYCRHRGAGVQSIHAWLE-----MEAVPGKSKG 251
           YR LC VYY  ++  G + IH  L+     ++  PG+ KG
Sbjct: 494 YRHLCAVYY--NKNPGFEIIHGLLDRIMQLLDVPPGEDKG 531

>RS16_CHLPN (Q9Z965) 30S ribosomal protein S16|
          Length = 119

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -2

Query: 337 VYYCRHRGAGVQSIHAWLEMEAVPGKSKGPQGRRQRERWILRWNKEAPRQGRNLQVEAA 161
           ++Y   RGA + S    L  +  PG       +++  + ++R  + A RQ R+ Q E A
Sbjct: 55  IFYWLERGAQLSSKAEALVKQGAPGVYSALLSKQEARKLVVRKKRRAYRQRRSTQREEA 113

>LOB_ARATH (Q9FML4) Protein LATERAL ORGAN BOUNDARIES|
          Length = 186

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 203 GSSKTRTKSP--SGSSYGQQIPWNNG 132
           G+S    + P  +G SYG  +PWNNG
Sbjct: 153 GASPVMNQMPRGTGGSYGTFLPWNNG 178

>DNM3A_MOUSE (O88508) DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37)|
           (Dnmt3a) (DNA methyltransferase MmuIIIA) (DNA MTase
           MmuIIIA) (M.MmuIIIA)
          Length = 908

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -2

Query: 241 RRQRERWILRWNKEAPRQGRNLQVEAAM 158
           +R+R+ W+ RW +EA ++ + + V  A+
Sbjct: 196 KRKRDEWLARWKREAEKKAKVIAVMNAV 223

>DPOLZ_HUMAN (O60673) DNA polymerase zeta catalytic subunit (EC 2.7.7.7) (hREV3)|
          Length = 3130

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 200  SSKTRTKSPSGSSYGQQIPWNNGIIQPLLTPQS 102
            SS   T SPS S  G   P    I++PL++P S
Sbjct: 1854 SSPRSTSSPSQSKNGSFTPRTANILKPLMSPPS 1886

>MUC15_BOVIN (Q8MI01) Mucin-15 precursor (PASIII) (PAS3) (Glycoprotein C)|
           (Glycoprotein 4) (Component II)
          Length = 330

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 182 KSPSGSSYGQQIPWNNGIIQPLLTPQSS 99
           +SPS  S+  ++PWN+ I    L P S+
Sbjct: 108 RSPSTHSFVSKLPWNSSIADNSLLPASA 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,205,246
Number of Sequences: 219361
Number of extensions: 1235246
Number of successful extensions: 3741
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3737
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)