ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd2a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188144.1| Oryza sativa (japonica cultivar-group), Ozsa857... 119 6e-24
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
3dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
4dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
5dbj|AK069448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 6e-24
6dbj|AK064952.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 6e-24
7dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
8dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic D... 119 6e-24
9gb|DP000017.1| Sus scrofa target 1 genomic scaffold 42 1.2
10ref|XM_456588.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 1.2
11gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence 42 1.2
12emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS... 42 1.2
13gb|AC009735.23| Drosophila melanogaster clone BACR15O02, complet... 40 4.8
14gb|AC008355.5| Drosophila melanogaster clone BACR30G03, complete... 40 4.8
15gb|AC073325.9| Homo sapiens BAC clone RP11-351I12 from 7, comple... 40 4.8
16gb|AC145090.1| Pan troglodytes BAC clone RP43-2G11 from 7, compl... 40 4.8
17gb|AC090799.2| Homo sapiens chromosome 11, clone RP11-242N18, co... 40 4.8
18gb|AE003606.4| Drosophila melanogaster chromosome 3R, section 2 ... 40 4.8 
>ref|NM_188144.1| Oryza sativa (japonica cultivar-group), Ozsa8576 predicted mRNA
          Length = 1248

 Score =  119 bits (60), Expect = 6e-24
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                        
Query: 149  tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 208
            ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 1235 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 1176

                                                                        
Query: 209  ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 268
            ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 1175 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 1116

                                                        
Query: 269  gactgcctccatctcgagccaggcgtgtattgattgaactccag 312
            | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 1115 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 1072
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 6e-24
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                            
Query: 149      tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 208
                ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 10006322 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 10006263

                                                                            
Query: 209      ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 268
                ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 10006262 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 10006203

                                                            
Query: 269      gactgcctccatctcgagccaggcgtgtattgattgaactccag 312
                | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 10006202 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 10006159
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>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1085F09
          Length = 132713

 Score =  119 bits (60), Expect = 6e-24
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                         
Query: 149   tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 208
             ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 86604 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 86545

                                                                         
Query: 209   ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 268
             ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 86544 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 86485

                                                         
Query: 269   gactgcctccatctcgagccaggcgtgtattgattgaactccag 312
             | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 86484 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 86441
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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0003H10
          Length = 142418

 Score =  119 bits (60), Expect = 6e-24
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                          
Query: 149    tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 208
              ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 142088 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 142029

                                                                          
Query: 209    ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 268
              ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 142028 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 141969

                                                          
Query: 269    gactgcctccatctcgagccaggcgtgtattgattgaactccag 312
              | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 141968 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 141925
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>dbj|AK069448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020G14, full
           insert sequence
          Length = 890

 Score =  119 bits (60), Expect = 6e-24
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                       
Query: 149 tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 208
           ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 471 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 412

                                                                       
Query: 209 ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 268
           ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 411 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 352

                                                       
Query: 269 gactgcctccatctcgagccaggcgtgtattgattgaactccag 312
           | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 351 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 308
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>dbj|AK064952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001A01, full
            insert sequence
          Length = 2351

 Score =  119 bits (60), Expect = 6e-24
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                        
Query: 149  tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 208
            ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 1953 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 1894

                                                                        
Query: 209  ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 268
            ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 1893 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 1834

                                                        
Query: 269  gactgcctccatctcgagccaggcgtgtattgattgaactccag 312
            | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 1833 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 1790
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>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0021A04
          Length = 50487

 Score =  119 bits (60), Expect = 6e-24
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                         
Query: 149   tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 208
             ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 33879 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 33820

                                                                         
Query: 209   ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 268
             ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 33819 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 33760

                                                         
Query: 269   gactgcctccatctcgagccaggcgtgtattgattgaactccag 312
             | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 33759 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 33716
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>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0036E02
          Length = 145931

 Score =  119 bits (60), Expect = 6e-24
 Identities = 138/164 (84%)
 Strand = Plus / Minus

                                                                          
Query: 149    tctgttggccatagctgcttccacttggagatttcgtccttgtcttggagcttccttatt 208
              ||||||||||| | |||  ||||||| ||||| || ||||||    |||||||||| |||
Sbjct: 100815 tctgttggccacaactgtctccactttgagatctcatccttgctgcggagcttcctgatt 100756

                                                                          
Query: 209    ccaccgtagaatccatcgctctcgttgccttcttccctgtggtcctttcgatttaccagg 268
              ||||||||||| || |||| ||| ||||| ||||||||||||||||| || || ||||| 
Sbjct: 100755 ccaccgtagaaaccgtcgccctcattgccctcttccctgtggtccttccggttcaccagc 100696

                                                          
Query: 269    gactgcctccatctcgagccaggcgtgtattgattgaactccag 312
              | |||||||||||| || ||||| |||||||| |||||||||||
Sbjct: 100695 gcctgcctccatcttgaaccaggtgtgtattggttgaactccag 100652
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>gb|DP000017.1| Sus scrofa target 1 genomic scaffold
          Length = 1471440

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 233    ttgccttcttccctgtggtcctttc 257
              ||||||||||||||||| |||||||
Sbjct: 667517 ttgccttcttccctgtgctcctttc 667493
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>ref|XM_456588.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A06138g)
            partial mRNA
          Length = 2949

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 101  ttgattgaggagtcaataacg 121
            |||||||||||||||||||||
Sbjct: 2521 ttgattgaggagtcaataacg 2501
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>gb|AC087180.2| Sus scrofa clone RP44-338P10, complete sequence
          Length = 117818

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 233   ttgccttcttccctgtggtcctttc 257
             ||||||||||||||||| |||||||
Sbjct: 89879 ttgccttcttccctgtgctcctttc 89855
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>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces
              hansenii
          Length = 1249565

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 101    ttgattgaggagtcaataacg 121
              |||||||||||||||||||||
Sbjct: 497272 ttgattgaggagtcaataacg 497252
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>gb|AC009735.23| Drosophila melanogaster clone BACR15O02, complete sequence
          Length = 159479

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    ctttcgatttaccagggact 272
              ||||||||||||||||||||
Sbjct: 130010 ctttcgatttaccagggact 129991
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>gb|AC008355.5| Drosophila melanogaster clone BACR30G03, complete sequence
          Length = 151500

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ctttcgatttaccagggact 272
             ||||||||||||||||||||
Sbjct: 42424 ctttcgatttaccagggact 42405
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>gb|AC073325.9| Homo sapiens BAC clone RP11-351I12 from 7, complete sequence
          Length = 168872

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    gagggtgtggctgatggtgg 57
             ||||||||||||||||||||
Sbjct: 65760 gagggtgtggctgatggtgg 65779
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>gb|AC145090.1| Pan troglodytes BAC clone RP43-2G11 from 7, complete sequence
          Length = 173759

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   gagggtgtggctgatggtgg 57
            ||||||||||||||||||||
Sbjct: 4967 gagggtgtggctgatggtgg 4986
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>gb|AC090799.2| Homo sapiens chromosome 11, clone RP11-242N18, complete sequence
          Length = 155803

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    atcaatggaaaggcatgcca 90
             ||||||||||||||||||||
Sbjct: 65490 atcaatggaaaggcatgcca 65471
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>gb|AE003606.4| Drosophila melanogaster chromosome 3R, section 2 of 118 of the complete
             sequence
          Length = 299749

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 253   ctttcgatttaccagggact 272
             ||||||||||||||||||||
Sbjct: 35328 ctttcgatttaccagggact 35309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,686,407
Number of Sequences: 3902068
Number of extensions: 2686407
Number of successful extensions: 43838
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43787
Number of HSP's gapped (non-prelim): 43
length of query: 362
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 340
effective length of database: 17,147,199,772
effective search space: 5830047922480
effective search space used: 5830047922480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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