| Clone Name | rbasd1k23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF274001.1|AF274001 Triticum aestivum oxidase (IM1) mRNA, partial cds Length = 1073 Score = 763 bits (385), Expect = 0.0 Identities = 536/586 (91%), Gaps = 6/586 (1%) Strand = Plus / Minus Query: 94 aagnatgggatacaatatatcaccaaaatttagtatgctattctacattgttctagaatg 153 ||| |||| |||||||||||||||||||||||||||| || ||||| || ||||| | | Sbjct: 860 aaggatggaatacaatatatcaccaaaatttagtatgatactctacgatgctctagcacg 801 Query: 154 gag----gtacaaccggtcaatcttcattttgcaagggacttcttgacgaaatcattctg 209 ||| ||||||||||||| |||||| ||| |||||||||||||||| |||||||||| Sbjct: 800 gaggtacgtacaaccggtcagtcttca-tttccaagggacttcttgacagaatcattctg 742 Query: 210 tatcagcttctacggagctctgtacagagtgaggagaacggagagtttcgtgcgtttgac 269 |||||||||||| |||||||| || | ||||||||||||||| ||||| |||||||||| Sbjct: 741 catcagcttctactgagctctgcacggcgtgaggagaacggagggtttcatgcgtttgac 682 Query: 270 aagccttcatcgtcttgcaatgctccgcctcatcatctcgtacattgacaaatacatcat 329 | |||||||| |||||||||||||||| |||||| || |||||||| || |||||||||| Sbjct: 681 aggccttcattgtcttgcaatgctccg-ctcatcgtcccgtacattcacgaatacatcat 623 Query: 330 acaggttatcaactttaggcctcctagaatttggagctcttgatgtttgaaactcatcaa 389 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 622 acaagttatcaactttaggcctcctagaatttggagctcttgatgtttgaaactcatcaa 563 Query: 390 acatgtagagatcctcattcatgtaatagtttacagccacctctggagctggtagtttct 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct: 562 acatgtagagatcctcattcatgtaatagtttacagccacctctggagctggtaattttt 503 Query: 450 tcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctctcaa 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 tcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctctcaa 443 Query: 510 cacattcagaaaagtggtatgccattcttgggctcagcatgtacatggcgacagtgacaa 569 |||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| | Sbjct: 442 cacattcagaaaagtgatatgccattcttgggctcagcatgtacatgccaacagtgacga 383 Query: 570 agtagtnnnnnnnggcactaaaccgcgcaagaaagcgatcaatccatacagagttgccac 629 |||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 382 agtagtaaaaaaaggcgctaaaccgcgcaagaaagcgatcaagccatacagagttgccac 323 Query: 630 ccaacgcttccatgattaagaggtgatggaactcattcatgctttc 675 |||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 322 ccaatgcctccatgattaagaggtgatggaactcattcatgctttc 277
>ref|XM_474279.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1011 Score = 404 bits (204), Expect = e-109 Identities = 374/433 (86%) Strand = Plus / Minus Query: 235 agagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtcttgcaatgctc 294 ||||||||||||||| || || | || |||||||| |||||||||||||||||||| || Sbjct: 909 agagtgaggagaacgaaggtttccatgtgtttgacaggccttcatcgtcttgcaatgttc 850 Query: 295 cgcctcatcatctcgtacattgacaaatacatcatacaggttatcaactttaggcctcct 354 |||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 849 tgcctcatcatctcgtatattgacaaatacatcatacaagttatcaattttaggtctcct 790 Query: 355 agaatttggagctcttgatgtttgaaactcatcaaacatgtagagatcctcattcatgta 414 |||| ||| |||||| ||||||||| ||||| || | ||| ||||||||||||| ||| Sbjct: 789 agaacatgggactcttgctgtttgaaattcatcgaataagtaaagatcctcattcaggta 730 Query: 415 atagtttacagccacctctggagctggtagtttcttcaactcctctccattgagcttaag 474 |||||||| |||| |||| ||||||||||| || |||||||| ||| ||| |||||||| Sbjct: 729 atagtttaaagccgcctcgggagctggtagctttttcaactcatcttcatggagcttaat 670 Query: 475 gaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtggtatgccat 534 ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 669 aaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaaatggtatgccat 610 Query: 535 tcttgggctcagcatgtacatggcgacagtgacaaagtagtnnnnnnnggcactaaaccg 594 ||||||||||| ||||||||| || ||||| | ||||||| ||| |||||| Sbjct: 609 tcttgggctcaccatgtacatcgcaacagtcatgaagtagtaaaaaaatgcagcaaaccg 550 Query: 595 cgcaagaaagcgatcaatccatacagagttgccacccaacgcttccatgattaagaggtg 654 |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 549 tgcaagaaaacgatcaacccataaagagttgccacccaattcttccatgattaagaggtg 490 Query: 655 atggaactcattc 667 ||||||||||||| Sbjct: 489 atggaactcattc 477
>gb|AF085174.3| Oryza sativa (japonica cultivar-group) oxidase (IM1) mRNA, complete cds; nuclear gene for plastid product Length = 1564 Score = 404 bits (204), Expect = e-109 Identities = 374/433 (86%) Strand = Plus / Minus Query: 235 agagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtcttgcaatgctc 294 ||||||||||||||| || || | || |||||||| |||||||||||||||||||| || Sbjct: 909 agagtgaggagaacgaaggtttccatgtgtttgacaggccttcatcgtcttgcaatgttc 850 Query: 295 cgcctcatcatctcgtacattgacaaatacatcatacaggttatcaactttaggcctcct 354 |||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 849 tgcctcatcatctcgtatattgacaaatacatcatacaagttatcaattttaggtctcct 790 Query: 355 agaatttggagctcttgatgtttgaaactcatcaaacatgtagagatcctcattcatgta 414 |||| ||| |||||| ||||||||| ||||| || | ||| ||||||||||||| ||| Sbjct: 789 agaacatgggactcttgctgtttgaaattcatcgaataagtaaagatcctcattcaggta 730 Query: 415 atagtttacagccacctctggagctggtagtttcttcaactcctctccattgagcttaag 474 |||||||| |||| |||| ||||||||||| || |||||||| ||| ||| |||||||| Sbjct: 729 atagtttaaagccgcctcgggagctggtagctttttcaactcatcttcatggagcttaat 670 Query: 475 gaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtggtatgccat 534 ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 669 aaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaaatggtatgccat 610 Query: 535 tcttgggctcagcatgtacatggcgacagtgacaaagtagtnnnnnnnggcactaaaccg 594 ||||||||||| ||||||||| || ||||| | ||||||| ||| |||||| Sbjct: 609 tcttgggctcaccatgtacatcgcaacagtcatgaagtagtaaaaaaatgcagcaaaccg 550 Query: 595 cgcaagaaagcgatcaatccatacagagttgccacccaacgcttccatgattaagaggtg 654 |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 549 tgcaagaaaacgatcaacccataaagagttgccacccaattcttccatgattaagaggtg 490 Query: 655 atggaactcattc 667 ||||||||||||| Sbjct: 489 atggaactcattc 477
>dbj|AK067891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124H21, full insert sequence Length = 1579 Score = 404 bits (204), Expect = e-109 Identities = 374/433 (86%) Strand = Plus / Minus Query: 235 agagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtcttgcaatgctc 294 ||||||||||||||| || || | || |||||||| |||||||||||||||||||| || Sbjct: 963 agagtgaggagaacgaaggtttccatgtgtttgacaggccttcatcgtcttgcaatgttc 904 Query: 295 cgcctcatcatctcgtacattgacaaatacatcatacaggttatcaactttaggcctcct 354 |||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 903 tgcctcatcatctcgtatattgacaaatacatcatacaagttatcaattttaggtctcct 844 Query: 355 agaatttggagctcttgatgtttgaaactcatcaaacatgtagagatcctcattcatgta 414 |||| ||| |||||| ||||||||| ||||| || | ||| ||||||||||||| ||| Sbjct: 843 agaacatgggactcttgctgtttgaaattcatcgaataagtaaagatcctcattcaggta 784 Query: 415 atagtttacagccacctctggagctggtagtttcttcaactcctctccattgagcttaag 474 |||||||| |||| |||| ||||||||||| || |||||||| ||| ||| |||||||| Sbjct: 783 atagtttaaagccgcctcgggagctggtagctttttcaactcatcttcatggagcttaat 724 Query: 475 gaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtggtatgccat 534 ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 723 aaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaaatggtatgccat 664 Query: 535 tcttgggctcagcatgtacatggcgacagtgacaaagtagtnnnnnnnggcactaaaccg 594 ||||||||||| ||||||||| || ||||| | ||||||| ||| |||||| Sbjct: 663 tcttgggctcaccatgtacatcgcaacagtcatgaagtagtaaaaaaatgcagcaaaccg 604 Query: 595 cgcaagaaagcgatcaatccatacagagttgccacccaacgcttccatgattaagaggtg 654 |||||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||| Sbjct: 603 tgcaagaaaacgatcaacccataaagagttgccacccaattcttccatgattaagaggtg 544 Query: 655 atggaactcattc 667 ||||||||||||| Sbjct: 543 atggaactcattc 531
>emb|AJ234437.1|HVU234437 Hordeum vulgare partial mRNA; clone cMWG0720 Length = 231 Score = 281 bits (142), Expect = 1e-72 Identities = 209/230 (90%), Gaps = 1/230 (0%) Strand = Plus / Minus Query: 165 ggtcaatcttcattttgcaagggacttcttgacgaaatcattctgtatcagcttctacgg 224 |||||||||| |||| ||||| ||||||||||| |||||| | |||||||||| || Sbjct: 231 ggtcaatcttgattt-gcaagagacttcttgacacgatcatttggaatcagcttctgtgg 173 Query: 225 agctctgtacagagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtct 284 ||||||| || ||||||||||||||||| ||||| ||||||||||| ||||||||||||| Sbjct: 172 agctctgcacggagtgaggagaacggagggtttcatgcgtttgacatgccttcatcgtct 113 Query: 285 tgcaatgctccgcctcatcatctcgtacattgacaaatacatcatacaggttatcaactt 344 ||||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||||| Sbjct: 112 tgcaatgctccgcctcatcgtctcgtacattcacaaatacatcgtacaagttatcaactt 53 Query: 345 taggcctcctagaatttggagctcttgatgtttgaaactcatcaaacatg 394 |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 52 taggcctcctggaatttggagctcttgatgtttgaaactcatcaaacatg 3
>gb|AF288401.1|AF288401 Oryza sativa IM pseudogene, mRNA sequence Length = 1024 Score = 210 bits (106), Expect = 4e-51 Identities = 193/222 (86%) Strand = Plus / Minus Query: 235 agagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtcttgcaatgctc 294 ||||||||||||||| || || | || |||||||| |||||||||||||||||||| || Sbjct: 715 agagtgaggagaacgaaggtttccatgtgtttgacaggccttcatcgtcttgcaatgttc 656 Query: 295 cgcctcatcatctcgtacattgacaaatacatcatacaggttatcaactttaggcctcct 354 |||||||||||||||| |||||||||||||||||||| |||||||| |||||| ||||| Sbjct: 655 tgcctcatcatctcgtatattgacaaatacatcatacaagttatcaattttaggtctcct 596 Query: 355 agaatttggagctcttgatgtttgaaactcatcaaacatgtagagatcctcattcatgta 414 |||| ||| |||||| ||||||||| ||||| || | ||| ||||||||||||| ||| Sbjct: 595 agaacatgggactcttgctgtttgaaattcatcgaataagtaaagatcctcattcaggta 536 Query: 415 atagtttacagccacctctggagctggtagtttcttcaactc 456 |||||||| |||| |||| ||||||||||| || |||||||| Sbjct: 535 atagtttaaagccgcctcgggagctggtagctttttcaactc 494 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || Sbjct: 90 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaaatg 31 Query: 526 gt 527 || Sbjct: 30 gt 29
>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12, complete sequence Length = 190432 Score = 121 bits (61), Expect = 3e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 235 agagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtcttgcaatgctc 294 ||||||||||||||| || || | || |||||||| |||||||||||||||||||| || Sbjct: 68714 agagtgaggagaacgaaggtttccatgtgtttgacaggccttcatcgtcttgcaatgttc 68773 Query: 295 cgcctcatcatctcgtacattgacaaatacatcatacaggttatc 339 |||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 68774 tgcctcatcatctcgtatattgacaaatacatcatacaagttatc 68818 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || Sbjct: 69740 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaaatg 69799 Query: 526 gt 527 || Sbjct: 69800 gt 69801 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 398 agatcctcattcatgtaatagtttacagccacctctggagctggtagtttcttcaactc 456 ||||||||||||| ||||||||||| |||| |||| ||||||||||| || |||||||| Sbjct: 69278 agatcctcattcaggtaatagtttaaagccgcctcgggagctggtagctttttcaactc 69336 Score = 65.9 bits (33), Expect = 2e-07 Identities = 86/106 (81%) Strand = Plus / Plus Query: 528 atgccattcttgggctcagcatgtacatggcgacagtgacaaagtagtnnnnnnnggcac 587 |||||||||||||||||| ||||||||| || ||||| | ||||||| ||| Sbjct: 69913 atgccattcttgggctcaccatgtacatcgcaacagtcatgaagtagtaaaaaaatgcag 69972 Query: 588 taaaccgcgcaagaaagcgatcaatccatacagagttgccacccaa 633 |||||| |||||||| ||||||| ||||| ||||||||||||||| Sbjct: 69973 caaaccgtgcaagaaaacgatcaacccataaagagttgccacccaa 70018 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 636 cttccatgattaagaggtgatggaactcattc 667 |||||||||||||||||||||||||||||||| Sbjct: 70253 cttccatgattaagaggtgatggaactcattc 70284
>gb|AF241239.1|AF241239 Oryza sativa oxidase (IM) gene, partial cds Length = 1910 Score = 121 bits (61), Expect = 3e-24 Identities = 94/105 (89%) Strand = Plus / Minus Query: 235 agagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtcttgcaatgctc 294 ||||||||||||||| || || | || |||||||| |||||||||||||||||||| || Sbjct: 1280 agagtgaggagaacgaaggtttccatgtgtttgacaggccttcatcgtcttgcaatgttc 1221 Query: 295 cgcctcatcatctcgtacattgacaaatacatcatacaggttatc 339 |||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 1220 tgcctcatcatctcgtatattgacaaatacatcatacaagttatc 1176 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Minus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || Sbjct: 255 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaaatg 196 Query: 526 gt 527 || Sbjct: 195 gt 194 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Minus Query: 398 agatcctcattcatgtaatagtttacagccacctctggagctggtagtttcttcaactc 456 ||||||||||||| ||||||||||| |||| |||| ||||||||||| || |||||||| Sbjct: 717 agatcctcattcaggtaatagtttaaagccgcctcgggagctggtagctttttcaactc 659 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 528 atgccattcttgggctcagcatgtacatggcgacagt 564 |||||||||||||||||| ||||||||| || ||||| Sbjct: 82 atgccattcttgggctcaccatgtacatcgcaacagt 46
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 121 bits (61), Expect = 3e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 235 agagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtcttgcaatgctc 294 ||||||||||||||| || || | || |||||||| |||||||||||||||||||| || Sbjct: 34157332 agagtgaggagaacgaaggtttccatgtgtttgacaggccttcatcgtcttgcaatgttc 34157391 Query: 295 cgcctcatcatctcgtacattgacaaatacatcatacaggttatc 339 |||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 34157392 tgcctcatcatctcgtatattgacaaatacatcatacaagttatc 34157436 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || Sbjct: 34158358 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaaatg 34158417 Query: 526 gt 527 || Sbjct: 34158418 gt 34158419 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 398 agatcctcattcatgtaatagtttacagccacctctggagctggtagtttcttcaactc 456 ||||||||||||| ||||||||||| |||| |||| ||||||||||| || |||||||| Sbjct: 34157896 agatcctcattcaggtaatagtttaaagccgcctcgggagctggtagctttttcaactc 34157954 Score = 65.9 bits (33), Expect = 2e-07 Identities = 86/106 (81%) Strand = Plus / Plus Query: 528 atgccattcttgggctcagcatgtacatggcgacagtgacaaagtagtnnnnnnnggcac 587 |||||||||||||||||| ||||||||| || ||||| | ||||||| ||| Sbjct: 34158531 atgccattcttgggctcaccatgtacatcgcaacagtcatgaagtagtaaaaaaatgcag 34158590 Query: 588 taaaccgcgcaagaaagcgatcaatccatacagagttgccacccaa 633 |||||| |||||||| ||||||| ||||| ||||||||||||||| Sbjct: 34158591 caaaccgtgcaagaaaacgatcaacccataaagagttgccacccaa 34158636 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 636 cttccatgattaagaggtgatggaactcattc 667 |||||||||||||||||||||||||||||||| Sbjct: 34158871 cttccatgattaagaggtgatggaactcattc 34158902
>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete sequence Length = 99356 Score = 121 bits (61), Expect = 3e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 235 agagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtcttgcaatgctc 294 ||||||||||||||| || || | || |||||||| |||||||||||||||||||| || Sbjct: 73625 agagtgaggagaacgaaggtttccatgtgtttgacaggccttcatcgtcttgcaatgttc 73684 Query: 295 cgcctcatcatctcgtacattgacaaatacatcatacaggttatc 339 |||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 73685 tgcctcatcatctcgtatattgacaaatacatcatacaagttatc 73729 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || Sbjct: 74651 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaaatg 74710 Query: 526 gt 527 || Sbjct: 74711 gt 74712 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 398 agatcctcattcatgtaatagtttacagccacctctggagctggtagtttcttcaactc 456 ||||||||||||| ||||||||||| |||| |||| ||||||||||| || |||||||| Sbjct: 74189 agatcctcattcaggtaatagtttaaagccgcctcgggagctggtagctttttcaactc 74247 Score = 65.9 bits (33), Expect = 2e-07 Identities = 86/106 (81%) Strand = Plus / Plus Query: 528 atgccattcttgggctcagcatgtacatggcgacagtgacaaagtagtnnnnnnnggcac 587 |||||||||||||||||| ||||||||| || ||||| | ||||||| ||| Sbjct: 74824 atgccattcttgggctcaccatgtacatcgcaacagtcatgaagtagtaaaaaaatgcag 74883 Query: 588 taaaccgcgcaagaaagcgatcaatccatacagagttgccacccaa 633 |||||| |||||||| ||||||| ||||| ||||||||||||||| Sbjct: 74884 caaaccgtgcaagaaaacgatcaacccataaagagttgccacccaa 74929 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 636 cttccatgattaagaggtgatggaactcattc 667 |||||||||||||||||||||||||||||||| Sbjct: 75164 cttccatgattaagaggtgatggaactcattc 75195
>emb|AL732346.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0818H01, complete sequence Length = 101125 Score = 121 bits (61), Expect = 3e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 235 agagtgaggagaacggagagtttcgtgcgtttgacaagccttcatcgtcttgcaatgctc 294 ||||||||||||||| || || | || |||||||| |||||||||||||||||||| || Sbjct: 7995 agagtgaggagaacgaaggtttccatgtgtttgacaggccttcatcgtcttgcaatgttc 8054 Query: 295 cgcctcatcatctcgtacattgacaaatacatcatacaggttatc 339 |||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 8055 tgcctcatcatctcgtatattgacaaatacatcatacaagttatc 8099 Score = 83.8 bits (42), Expect = 7e-13 Identities = 57/62 (91%) Strand = Plus / Plus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || Sbjct: 9021 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaaatg 9080 Query: 526 gt 527 || Sbjct: 9081 gt 9082 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Plus Query: 398 agatcctcattcatgtaatagtttacagccacctctggagctggtagtttcttcaactc 456 ||||||||||||| ||||||||||| |||| |||| ||||||||||| || |||||||| Sbjct: 8559 agatcctcattcaggtaatagtttaaagccgcctcgggagctggtagctttttcaactc 8617 Score = 65.9 bits (33), Expect = 2e-07 Identities = 86/106 (81%) Strand = Plus / Plus Query: 528 atgccattcttgggctcagcatgtacatggcgacagtgacaaagtagtnnnnnnnggcac 587 |||||||||||||||||| ||||||||| || ||||| | ||||||| ||| Sbjct: 9194 atgccattcttgggctcaccatgtacatcgcaacagtcatgaagtagtaaaaaaatgcag 9253 Query: 588 taaaccgcgcaagaaagcgatcaatccatacagagttgccacccaa 633 |||||| |||||||| ||||||| ||||| ||||||||||||||| Sbjct: 9254 caaaccgtgcaagaaaacgatcaacccataaagagttgccacccaa 9299 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 636 cttccatgattaagaggtgatggaactcattc 667 |||||||||||||||||||||||||||||||| Sbjct: 9534 cttccatgattaagaggtgatggaactcattc 9565
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| | Sbjct: 35323782 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaagcg 35323723 Query: 526 gtatg 530 ||||| Sbjct: 35323722 gtatg 35323718 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 636 cttccatgattaagaggtgatggaactcattc 667 |||||||||||||||||||||||||||||||| Sbjct: 35322897 cttccatgattaagaggtgatggaactcattc 35322866 Score = 48.1 bits (24), Expect = 0.038 Identities = 27/28 (96%) Strand = Plus / Minus Query: 528 atgccattcttgggctcagcatgtacat 555 |||||||||||||||||| ||||||||| Sbjct: 35323619 atgccattcttgggctcaccatgtacat 35323592 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Minus Query: 596 gcaagaaagcgatcaatccatacagagttgccacccaa 633 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 35323171 gcaagaaaacgatcaactcataaagagttgccacccaa 35323134
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| | Sbjct: 35413854 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaagcg 35413795 Query: 526 gtatg 530 ||||| Sbjct: 35413794 gtatg 35413790 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 636 cttccatgattaagaggtgatggaactcattc 667 |||||||||||||||||||||||||||||||| Sbjct: 35412969 cttccatgattaagaggtgatggaactcattc 35412938 Score = 48.1 bits (24), Expect = 0.038 Identities = 27/28 (96%) Strand = Plus / Minus Query: 528 atgccattcttgggctcagcatgtacat 555 |||||||||||||||||| ||||||||| Sbjct: 35413691 atgccattcttgggctcaccatgtacat 35413664 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Minus Query: 596 gcaagaaagcgatcaatccatacagagttgccacccaa 633 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 35413243 gcaagaaaacgatcaactcataaagagttgccacccaa 35413206
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Plus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| | Sbjct: 44672 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaagcg 44731 Query: 526 gtatg 530 ||||| Sbjct: 44732 gtatg 44736 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Plus Query: 636 cttccatgattaagaggtgatggaactcattc 667 |||||||||||||||||||||||||||||||| Sbjct: 45557 cttccatgattaagaggtgatggaactcattc 45588 Score = 48.1 bits (24), Expect = 0.038 Identities = 27/28 (96%) Strand = Plus / Plus Query: 528 atgccattcttgggctcagcatgtacat 555 |||||||||||||||||| ||||||||| Sbjct: 44835 atgccattcttgggctcaccatgtacat 44862 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Plus Query: 596 gcaagaaagcgatcaatccatacagagttgccacccaa 633 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 45283 gcaagaaaacgatcaactcataaagagttgccacccaa 45320
>dbj|AK073859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073L16, full insert sequence Length = 3094 Score = 89.7 bits (45), Expect = 1e-14 Identities = 60/65 (92%) Strand = Plus / Minus Query: 466 gagcttaaggaacttgtcataagttgagtatgcatgcctctcaacacattcagaaaagtg 525 |||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| | Sbjct: 1837 gagcttaataaacttgtcataggttgagtacgcatgcctctcaacacattcagaaaagcg 1778 Query: 526 gtatg 530 ||||| Sbjct: 1777 gtatg 1773 Score = 63.9 bits (32), Expect = 6e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 636 cttccatgattaagaggtgatggaactcattc 667 |||||||||||||||||||||||||||||||| Sbjct: 951 cttccatgattaagaggtgatggaactcattc 920 Score = 48.1 bits (24), Expect = 0.038 Identities = 27/28 (96%) Strand = Plus / Minus Query: 528 atgccattcttgggctcagcatgtacat 555 |||||||||||||||||| ||||||||| Sbjct: 1674 atgccattcttgggctcaccatgtacat 1647 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Minus Query: 596 gcaagaaagcgatcaatccatacagagttgccacccaa 633 |||||||| ||||||| |||| ||||||||||||||| Sbjct: 1226 gcaagaaaacgatcaactcataaagagttgccacccaa 1189
>ref|NM_185204.1| Oryza sativa (japonica cultivar-group), mRNA Length = 504 Score = 83.8 bits (42), Expect = 7e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 614 catacagagttgccacccaacgcttccatgattaagaggtgatggaactcattc 667 |||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 503 cataaagagttgccacccaattcttccatgattaagaggtgatggaactcattc 450
>ref|NM_118352.2| Arabidopsis thaliana IM (IMMUTANS) AT4G22260 (IM) mRNA, complete cds Length = 1431 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 446 ttcttcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctc 505 |||||||||||||||||| || ||| || || || |||||||| |||||||| ||| Sbjct: 904 ttcttcaactcctctccactggccttgagaaatttatcataagtctcatatgcatgactc 845 Query: 506 tcaacacattcagaaaagtggtatgccattcttgggct 543 || |||||||| |||||||| ||||||||||| ||||| Sbjct: 844 tccacacattccgaaaagtgatatgccattctagggct 807 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 988 ggagttcttgatgtttggaactcatcaaa 960
>gb|BT000558.1| Arabidopsis thaliana unknown protein (At4g22260/T10I14_90) mRNA, complete cds Length = 1056 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 446 ttcttcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctc 505 |||||||||||||||||| || ||| || || || |||||||| |||||||| ||| Sbjct: 740 ttcttcaactcctctccactggccttgagaaatttatcataagtctcatatgcatgactc 681 Query: 506 tcaacacattcagaaaagtggtatgccattcttgggct 543 || |||||||| |||||||| ||||||||||| ||||| Sbjct: 680 tccacacattccgaaaagtgatatgccattctagggct 643 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 824 ggagttcttgatgtttggaactcatcaaa 796
>gb|AF339717.1| Arabidopsis thaliana unknown protein (At4g22260) mRNA, complete cds Length = 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 446 ttcttcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctc 505 |||||||||||||||||| || ||| || || || |||||||| |||||||| ||| Sbjct: 740 ttcttcaactcctctccactggccttgagaaatttatcataagtctcatatgcatgactc 681 Query: 506 tcaacacattcagaaaagtggtatgccattcttgggct 543 || |||||||| |||||||| ||||||||||| ||||| Sbjct: 680 tccacacattccgaaaagtgatatgccattctagggct 643 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 824 ggagttcttgatgtttggaactcatcaaa 796
>gb|AF326898.1| Arabidopsis thaliana unknown protein (At4g22260) mRNA, complete cds Length = 1393 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 446 ttcttcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctc 505 |||||||||||||||||| || ||| || || || |||||||| |||||||| ||| Sbjct: 851 ttcttcaactcctctccactggccttgagaaatttatcataagtctcatatgcatgactc 792 Query: 506 tcaacacattcagaaaagtggtatgccattcttgggct 543 || |||||||| |||||||| ||||||||||| ||||| Sbjct: 791 tccacacattccgaaaagtgatatgccattctagggct 754 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 935 ggagttcttgatgtttggaactcatcaaa 907
>gb|AY045699.1| Arabidopsis thaliana AT4g22260/T10I14_90 mRNA, complete cds Length = 1377 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 446 ttcttcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctc 505 |||||||||||||||||| || ||| || || || |||||||| |||||||| ||| Sbjct: 851 ttcttcaactcctctccactggccttgagaaatttatcataagtctcatatgcatgactc 792 Query: 506 tcaacacattcagaaaagtggtatgccattcttgggct 543 || |||||||| |||||||| ||||||||||| ||||| Sbjct: 791 tccacacattccgaaaagtgatatgccattctagggct 754 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 935 ggagttcttgatgtttggaactcatcaaa 907
>gb|AF324663.2|AF324663 Arabidopsis thaliana AT4g22260 (AT4g22260/T10I14_90) mRNA, complete cds Length = 1377 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 446 ttcttcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctc 505 |||||||||||||||||| || ||| || || || |||||||| |||||||| ||| Sbjct: 851 ttcttcaactcctctccactggccttgagaaatttatcataagtctcatatgcatgactc 792 Query: 506 tcaacacattcagaaaagtggtatgccattcttgggct 543 || |||||||| |||||||| ||||||||||| ||||| Sbjct: 791 tccacacattccgaaaagtgatatgccattctagggct 754 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 935 ggagttcttgatgtttggaactcatcaaa 907
>emb|AJ004881.1|ATJ004881 Arabidopsis thaliana mRNA for Immutans protein Length = 1396 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 446 ttcttcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctc 505 |||||||||||||||||| || ||| || || || |||||||| |||||||| ||| Sbjct: 869 ttcttcaactcctctccactggccttgagaaatttatcataagtctcatatgcatgactc 810 Query: 506 tcaacacattcagaaaagtggtatgccattcttgggct 543 || |||||||| |||||||| ||||||||||| ||||| Sbjct: 809 tccacacattccgaaaagtgatatgccattctagggct 772 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 953 ggagttcttgatgtttggaactcatcaaa 925
>gb|AF098072.1|AF098072 Arabidopsis thaliana IMMUTANS (IM) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1448 Score = 67.9 bits (34), Expect = 4e-08 Identities = 82/98 (83%) Strand = Plus / Minus Query: 446 ttcttcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctc 505 |||||||||||||||||| || ||| || || || |||||||| |||||||| ||| Sbjct: 904 ttcttcaactcctctccactggccttgagaaatttatcataagtctcatatgcatgactc 845 Query: 506 tcaacacattcagaaaagtggtatgccattcttgggct 543 || |||||||| |||||||| ||||||||||| ||||| Sbjct: 844 tccacacattccgaaaagtgatatgccattctagggct 807 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 988 ggagttcttgatgtttggaactcatcaaa 960
>gb|AF302931.1|AF302931 Lycopersicon esculentum plastid quinol oxidase mRNA, complete cds Length = 1463 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 493 gtatgcatgcctctcaacacattcagaaaagtggtatgccattcttgggctca 545 ||||||||| ||||| ||||||||||| || || ||||||||||| ||||||| Sbjct: 802 gtatgcatggctctccacacattcagagaaatgatatgccattctcgggctca 750
>gb|AF177980.1|AF177980 Lycopersicon esculentum plastid terminal oxidase (PTOX) mRNA, complete cds; nuclear gene encoding plastid protein Length = 1273 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 493 gtatgcatgcctctcaacacattcagaaaagtggtatgccattcttgggctca 545 ||||||||| ||||| ||||||||||| || || ||||||||||| ||||||| Sbjct: 832 gtatgcatggctctccacacattcagagaaatgatatgccattctcgggctca 780
>emb|BX826496.1|CNS0A47R Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB30ZH07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1282 Score = 48.1 bits (24), Expect = 0.038 Identities = 72/88 (81%) Strand = Plus / Minus Query: 448 cttcaactcctctccattgagcttaaggaacttgtcataagttgagtatgcatgcctctc 507 |||||||||||||||| || ||| || || || |||||||| |||||||| || || Sbjct: 816 cttcaactcctctccactggccttgagaaatttatcataagtctcatatgcatgactgtc 757 Query: 508 aacacattcagaaaagtggtatgccatt 535 |||||||| |||||||| ||||||||| Sbjct: 756 cacacattccgaaaagtgatatgccatt 729 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 903 ggagttcttgatgtttggaactcatcaaa 875
>gb|AY533825.1| Citrus sinensis plastid terminal oxidase (PTOX) mRNA, partial cds; nuclear gene for plastid product Length = 207 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 521 aagtggtatgccattcttgggct 543 ||||||||||||||||||||||| Sbjct: 207 aagtggtatgccattcttgggct 185
>emb|AL161432.17| Human DNA sequence from clone RP11-569I20 on chromosome 13, complete sequence Length = 67475 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 agtttcttcaactcctctcca 463 ||||||||||||||||||||| Sbjct: 63840 agtttcttcaactcctctcca 63820
>dbj|AK221825.1| Arabidopsis thaliana mRNA for IMMUTANS (IM), complete cds, clone: RAFL21-95-D11 Length = 552 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 362 ggagctcttgatgtttgaaactcatcaaa 390 |||| |||||||||||| ||||||||||| Sbjct: 121 ggagttcttgatgtttggaactcatcaaa 93
>gb|AF177981.1|AF177981 Capsicum annuum plastid terminal oxidase (PTOX) mRNA, complete cds; nuclear gene encoding plastid protein Length = 1387 Score = 42.1 bits (21), Expect = 2.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 509 acacattcagaaaagtggtatgccattcttgggctca 545 ||||||||||| || || ||||||||||| ||||||| Sbjct: 709 acacattcagagaaatgatatgccattctcgggctca 673
>emb|AL929570.7| Mouse DNA sequence from clone RP23-74G9 on chromosome 2, complete sequence Length = 230193 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 381 actcatcaaacatgtagagat 401 ||||||||||||||||||||| Sbjct: 122660 actcatcaaacatgtagagat 122640
>ref|NM_111068.2| Arabidopsis thaliana amino acid binding / aspartate kinase AT3G02020 mRNA, complete cds Length = 2185 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 caatgctccgcctcatcatc 306 |||||||||||||||||||| Sbjct: 1911 caatgctccgcctcatcatc 1892
>gb|AC137113.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0006N14, complete sequence Length = 155730 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tgctattctacattgttcta 148 |||||||||||||||||||| Sbjct: 38418 tgctattctacattgttcta 38437
>gb|AE013158.1| Thermoanaerobacter tengcongensis MB4, section 185 of 244 of the complete genome Length = 11438 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 gtttcttcaactcctctccattga 467 ||||||||||||||||| |||||| Sbjct: 6819 gtttcttcaactcctctgcattga 6842
>gb|AC147788.1| Latimeria menadoensis clone VMRC4-19C10, complete sequence Length = 168364 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 4 ttttataaatatttctactatgta 27 ||||| |||||||||||||||||| Sbjct: 102832 ttttagaaatatttctactatgta 102809
>gb|AC011664.10|ATAC011664 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence Length = 103960 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 caatgctccgcctcatcatc 306 |||||||||||||||||||| Sbjct: 68507 caatgctccgcctcatcatc 68488
>gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome III BAC F28J7 genomic sequence, complete sequence Length = 89154 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 caatgctccgcctcatcatc 306 |||||||||||||||||||| Sbjct: 85529 caatgctccgcctcatcatc 85548
>gb|AC119733.2| Homo sapiens 3 RP11-159G9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154803 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 attgacaaatacatcataca 332 |||||||||||||||||||| Sbjct: 27383 attgacaaatacatcataca 27364
>gb|AC121236.18| Medicago truncatula clone mth2-12m19, complete sequence Length = 124839 Score = 40.1 bits (20), Expect = 9.4 Identities = 41/48 (85%) Strand = Plus / Plus Query: 413 taatagtttacagccacctctggagctggtagtttcttcaactcctct 460 ||||| || ||||| ||||| |||||||| | ||| |||||||||||| Sbjct: 18838 taataattcacagcaacctcaggagctggcatttttttcaactcctct 18885
>gb|AC163628.5| Mus musculus BAC clone RP23-138F21 from chromosome 3, complete sequence Length = 194400 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 agccacctctggagctggta 443 |||||||||||||||||||| Sbjct: 189175 agccacctctggagctggta 189194
>emb|AJ972481.1| Medicago truncatula nsp1-2 gene for Nodulation Signaling Pathway 1-2 protein Length = 6813 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 catgcctctcaacacattcagaaa 521 ||||||||||||||| |||||||| Sbjct: 5455 catgcctctcaacaccttcagaaa 5432
>emb|AJ972480.1| Medicago truncatula nsp1-1 gene for Nodulation Signaling Pathway 1-1 protein Length = 6813 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 catgcctctcaacacattcagaaa 521 ||||||||||||||| |||||||| Sbjct: 5455 catgcctctcaacaccttcagaaa 5432
>emb|AJ972478.1| Medicago truncatula NSP1 gene for Nodulation Signaling Pathway 1 protein Length = 6813 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 498 catgcctctcaacacattcagaaa 521 ||||||||||||||| |||||||| Sbjct: 5455 catgcctctcaacaccttcagaaa 5432
>emb|AJ972473.1| Medicago truncatula partial NSP1 gene for Nodulation Signaling Pathway 1 protein Length = 63146 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 498 catgcctctcaacacattcagaaa 521 ||||||||||||||| |||||||| Sbjct: 35708 catgcctctcaacaccttcagaaa 35731
>emb|AL590682.9| Human DNA sequence from clone RP11-435F13 on chromosome 1 Contains a heterogeneous nuclear ribonucleoprotein A1 (HNRPA1) pseudogene, part of the RGS7 gene for regulator of G-protein signalling 7 and a ribosomal protein large P1 (RPLP1) pseudogene, complete sequence Length = 155156 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 tggagctcttgatgtttgaa 380 |||||||||||||||||||| Sbjct: 2671 tggagctcttgatgtttgaa 2652
>emb|AL354893.14| Human DNA sequence from clone RP11-80I15 on chromosome 9 Contains an RPS26 (ribosomal protein S26) pseudogene, the 3' end of the FANCC gene for Fanconi anemia complementation group C, the 3' end of gene FLJ14675, a novel gene and a CpG island, complete sequence Length = 103980 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 ctcaacacattcagaaaagt 524 |||||||||||||||||||| Sbjct: 16753 ctcaacacattcagaaaagt 16772
>gb|AC011726.11| Homo sapiens chromosome , clone RP11-14I17, complete sequence Length = 170074 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 503 ctctcaacacattcagaaaa 522 |||||||||||||||||||| Sbjct: 54955 ctctcaacacattcagaaaa 54936
>ref|XM_782544.1| PREDICTED: Strongylocentrotus purpuratus similar to CG15730-PA (LOC582600), mRNA Length = 1656 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 tcaaacatgtagagatcctcattc 409 ||||| |||||||||||||||||| Sbjct: 374 tcaaagatgtagagatcctcattc 351
>gb|AC158365.2| Mus musculus BAC clone RP23-182N12 from chromosome 12, complete sequence Length = 220129 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 acacattcagaaaagtggta 528 |||||||||||||||||||| Sbjct: 85281 acacattcagaaaagtggta 85300
>gb|AC022911.6| Homo sapiens chromosome 8, clone RP11-722A15, complete sequence Length = 176063 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 ctctcaacacattcagaaaa 522 |||||||||||||||||||| Sbjct: 54166 ctctcaacacattcagaaaa 54185
>emb|CR858311.1| Pongo pygmaeus mRNA; cDNA DKFZp468G237 (from clone DKFZp468G237) Length = 3340 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 cacattcagaaaagtggtat 529 |||||||||||||||||||| Sbjct: 1951 cacattcagaaaagtggtat 1970
>gb|AC150441.2| Medicago truncatula chromosome 2 BAC clone mth2-19l4, complete sequence Length = 120811 Score = 40.1 bits (20), Expect = 9.4 Identities = 41/48 (85%) Strand = Plus / Minus Query: 413 taatagtttacagccacctctggagctggtagtttcttcaactcctct 460 ||||| || ||||| ||||| |||||||| | ||| |||||||||||| Sbjct: 16983 taataattcacagcaacctcaggagctggcatttttttcaactcctct 16936
>gb|AC008561.5| Homo sapiens chromosome 5 clone CTC-535A4, complete sequence Length = 93641 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ctttaggcctcctagaattt 361 |||||||||||||||||||| Sbjct: 48000 ctttaggcctcctagaattt 47981
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tgctattctacattgttcta 148 |||||||||||||||||||| Sbjct: 15182785 tgctattctacattgttcta 15182804
>gb|AC093752.2| Homo sapiens BAC clone RP11-33B1 from 4, complete sequence Length = 130879 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 tagtttacagccacctctgg 435 |||||||||||||||||||| Sbjct: 51597 tagtttacagccacctctgg 51616
>gb|AY220878.1| Homo sapiens Fanconi anemia, complementation group C (FANCC) gene, complete cds Length = 221989 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 ctcaacacattcagaaaagt 524 |||||||||||||||||||| Sbjct: 163105 ctcaacacattcagaaaagt 163124
>gb|AY088366.1| Arabidopsis thaliana clone 6203 mRNA, complete sequence Length = 2164 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 caatgctccgcctcatcatc 306 |||||||||||||||||||| Sbjct: 1910 caatgctccgcctcatcatc 1891
>gb|AC092580.3| Homo sapiens BAC clone RP11-16D24 from 2, complete sequence Length = 120492 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tgttttataaatatttctac 21 |||||||||||||||||||| Sbjct: 16969 tgttttataaatatttctac 16988
>gb|AC092836.4| Homo sapiens BAC clone RP11-50B16 from 2, complete sequence Length = 165768 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 tacattgacaaatacatcatacag 333 |||||||| ||||||||||||||| Sbjct: 163054 tacattgagaaatacatcatacag 163077
>gb|AC154123.9| Mus musculus chromosome 5, clone RP24-324D14, complete sequence Length = 175751 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 508 aacacattcagaaaagtggt 527 |||||||||||||||||||| Sbjct: 58526 aacacattcagaaaagtggt 58507
>gb|AC117207.5| Mus musculus BAC clone RP23-278A7 from 8, complete sequence Length = 198927 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ttctgtatcagcttctacgg 224 |||||||||||||||||||| Sbjct: 44400 ttctgtatcagcttctacgg 44419
>gb|AC079682.29| Mus musculus strain C57BL/6J chromosome 3 clone rp23-463h24, complete sequence Length = 181082 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 424 agccacctctggagctggta 443 |||||||||||||||||||| Sbjct: 103515 agccacctctggagctggta 103496
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 tgctattctacattgttcta 148 |||||||||||||||||||| Sbjct: 15264284 tgctattctacattgttcta 15264303 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,797,896 Number of Sequences: 3902068 Number of extensions: 5797896 Number of successful extensions: 105315 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105019 Number of HSP's gapped (non-prelim): 285 length of query: 685 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 662 effective length of database: 17,143,297,704 effective search space: 11348863080048 effective search space used: 11348863080048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)