ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8n03 |
|---|---|
| Clone Library Name | barley_pub |
>DEGP7_ARATH (Q8RY22) Protease Do-like 7 (EC 3.4.21.-)| Length = 1097 Score = 38.5 bits (88), Expect = 0.012 Identities = 17/35 (48%), Positives = 28/35 (80%) Frame = -3 Query: 251 VVTKFLTMESLLDESVDKEINLQIE*GGTPLTVTL 147 V+T+FL +E+LLD+ V + + L+IE GG PL+V++ Sbjct: 332 VLTQFLNLENLLDDGVGQILELEIERGGQPLSVSV 366
>YA3B_SCHPO (Q09716) Hypothetical protein C18B11.11 in chromosome I| Length = 1294 Score = 37.4 bits (85), Expect = 0.028 Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 2/61 (3%) Frame = -3 Query: 371 CIN--LASCCSLYFFSLMHFPCYFNLTYHINFLFNDVLNYLQVVTKFLTMESLLDESVDK 198 CI+ + +CC++ FS+MH P +F++T N ++N+L+++ ++ L+E ++K Sbjct: 796 CIDTLITNCCAMQSFSIMHLPKFFSITMSSNLSERSLVNFLRLL-HVVSDNWELNEGLEK 854 Query: 197 E 195 E Sbjct: 855 E 855
>YNM3_YEAST (P53920) Hypothetical 110.9 kDa protein in SPC98-TOM70 intergenic| region Length = 997 Score = 32.7 bits (73), Expect = 0.68 Identities = 14/35 (40%), Positives = 23/35 (65%) Frame = -3 Query: 254 QVVTKFLTMESLLDESVDKEINLQIE*GGTPLTVT 150 + ++ F+ ++ + DE+V KEI L I+ GG TVT Sbjct: 350 ETISSFMQVDKIQDENVGKEIQLVIQRGGVECTVT 384
>T2R55_GORGO (Q645Z3) Taste receptor type 2 member 55 (T2R55)| Length = 299 Score = 30.4 bits (67), Expect = 3.4 Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Frame = -3 Query: 362 LASCCSL-YFFSLMHFPCYFNLTYHINFLFNDVLNYLQVVTKFLTM--ESLLDESVDKEI 192 LA+C S+ YFF + HFP +L + + N ++ L +++ FL + S+L+ +D + Sbjct: 99 LATCLSVFYFFKIAHFP--HSLFLWLRWRMNGMIAMLLILSLFLLIFDSSVLEIFIDISL 156 Query: 191 NL 186 N+ Sbjct: 157 NI 158
>BCLX_PIG (O77737) Apoptosis regulator Bcl-X (Bcl-2-like 1 protein)| Length = 233 Score = 29.6 bits (65), Expect = 5.8 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = -3 Query: 290 INFLFNDVLNYLQVVTKFLTMESLLDESVDKEINLQIE*GGTPLTVTLKDDLK 132 +N LF D +N+ ++V F +L ESVDKE+ + + T + L D L+ Sbjct: 127 LNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIATWMATYLNDHLE 179
>UDB14_RABIT (P36513) UDP-glucuronosyltransferase 2B14 precursor (EC 2.4.1.17)| (UDPGT) (EGT12) Length = 530 Score = 29.3 bits (64), Expect = 7.6 Identities = 23/89 (25%), Positives = 44/89 (49%) Frame = -3 Query: 398 ILLVLKSSCCINLASCCSLYFFSLMHFPCYFNLTYHINFLFNDVLNYLQVVTKFLTMESL 219 +LL+L+ SCC SC ++ +P F+L ++N + ++++ V S+ Sbjct: 9 LLLLLQLSCCFRTGSC-----GKVLVWPMDFSLWMNLNVILDELVRRGHEVIVLRNSASI 63 Query: 218 LDESVDKEINLQIE*GGTPLTVTLKDDLK 132 + K+ N++ E P+ T KDDL+ Sbjct: 64 FIDP-SKQANIKFE--TFPIAAT-KDDLE 88
>YIFC_SCHPO (Q9P7S1) Hypothetical protein C23G3.12c in chromosome I| Length = 996 Score = 29.3 bits (64), Expect = 7.6 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -3 Query: 272 DVLNYLQ--VVTKFLTMESLLDESVDKEINLQIE*GGTPLTVTLKDDLKH 129 D+L Y+ ++ + +ES+LDESV K++ L ++ G + +T H Sbjct: 322 DILLYVNSMILINLIELESILDESVGKDVVLTVQRGSELVELTCTAQSTH 371
>VGNB_CPMV (P03600) Genome polyprotein B (RNA1 polyprotein) [Contains: Protease| cofactor (32 kDa protein); Putative helicase (EC 3.6.1.-) (NTP-binding protein) (NTB) (Membrane-binding protein) (58 kDa protein); Viral genome-linked protein (VPg); Picornain Length = 1866 Score = 29.3 bits (64), Expect = 7.6 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = -3 Query: 386 LKSSCCINLASCCSLYFFSLMHFPCYFNLTYHINFLFNDVL---NYLQVVTKFLTMESLL 216 L +CC LA C + + P F +T +N +FN++L +Y +++ + E L+ Sbjct: 1472 LLMACCSRLAICKNTVWRVECGIPSGFPMTVIVNSIFNEILIRYHYKKLMREQQAPE-LM 1530 Query: 215 DESVDKEINL 186 +S DK I L Sbjct: 1531 VQSFDKLIGL 1540
>T2R55_PANTR (Q646B8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 29.3 bits (64), Expect = 7.6 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = -3 Query: 362 LASCCSL-YFFSLMHFPCYFNLTYHINFLFNDVLNYLQVVTKFLTMESLLDESVDKEINL 186 LA+C S+ YFF + HFP +L + + N ++ L +++ FL + + L + +I+L Sbjct: 99 LATCLSIFYFFKIAHFP--HSLFLWLRWRMNGMIVMLLILSLFLLIFNSLVLEIFIDISL 156 Query: 185 QI 180 I Sbjct: 157 NI 158
>LPXB_COXBU (Q83DS5) Lipid-A-disaccharide synthase (EC 2.4.1.182)| Length = 376 Score = 29.3 bits (64), Expect = 7.6 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 98 GNKKLRLSLMLCCALVGPEPLCVE 27 G K +RLS + C LV PEP+ VE Sbjct: 295 GKKLIRLSFIGLCNLVSPEPVAVE 318
>FUS1_SCHPO (Q10719) Cell fusion protein fus1| Length = 1372 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -3 Query: 353 CCSLYFFSLMHFPCYFNLTYHINFLFNDVLNYLQVVTKFLTMESLLDESVDK 198 C SL S +HF + NL HI ND K +ESLL S+ K Sbjct: 1065 CASLELKSSLHFKYFLNLVLHIGNFMNDAPRR----AKGYRLESLLRASMIK 1112
>T2R55_PANPA (Q5Y4Z2) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = -3 Query: 362 LASCCSL-YFFSLMHFPCYFNLTYHINFLFNDVLNYLQVVTKFLTMESLLDESVDKEINL 186 LA+C S+ YFF + HFP +L + + N ++ L +++ FL + L + +I+L Sbjct: 99 LATCLSIFYFFKIAHFP--HSLFLWLRWRMNGMIVMLLILSLFLLIFDSLVLEIFIDISL 156 Query: 185 QI 180 I Sbjct: 157 NI 158
>T2R55_MACMU (Q645T9) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Frame = -3 Query: 362 LASCCSL-YFFSLMHFPCYFNLTYHINFLFNDVLNYLQVVTKFLTMES--LLDESVDKEI 192 LA+C S+ YFF + HFP +L + + N V+ L ++ FL + +L+ +D + Sbjct: 99 LATCLSIFYFFKIAHFP--HSLFLWLRWRMNRVIAILLTLSLFLLIFDCLVLEMFIDXSL 156 Query: 191 NL 186 N+ Sbjct: 157 NI 158
>T2R55_HUMAN (Q7RTR8) Taste receptor type 2 member 55 (T2R55)| Length = 314 Score = 28.9 bits (63), Expect = 9.9 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Frame = -3 Query: 362 LASCCSL-YFFSLMHFPCYFNLTYHINFLFNDVLNYLQVVTKFLTMESLLDESVDKEINL 186 LA+C S+ YFF + HFP +L + + N ++ L +++ FL + L + +I+L Sbjct: 99 LATCLSIFYFFKIAHFP--HSLFLWLRWRMNGMIVMLLILSLFLLIFDSLVLEIFIDISL 156 Query: 185 QI 180 I Sbjct: 157 NI 158
>Y022_BUCBP (Q89B32) Hypothetical UPF0069 protein bbp_022| Length = 340 Score = 28.9 bits (63), Expect = 9.9 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -3 Query: 401 KILLVLKSSCCINLASCCSLYFFSLMHFPCYFNLTYHINFLFN 273 +ILL+LK++C IN C YF H NL I ++ N Sbjct: 111 RILLLLKTNCAINCRYCFRRYFPYSQHPGNKENLNLAIQYIKN 153
>PDR3_YEAST (P33200) Transcription factor PDR3 (Pleiotropic drug resistance| protein 3) Length = 976 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Frame = -3 Query: 353 CCSLYFFSLMHFPCYFNLT-YHINFLFNDVLNYLQVVTKFLTMESLLDESVDKEINLQI 180 C S Y S + + Y+N+T YH+ L + L+YL+++ L +++ +DE E L++ Sbjct: 402 CSSEYLLSTLCY-AYYNVTLYHM--LDINTLDYLEILVSLLEIQNEIDERFGFEKMLEV 457 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,429,257 Number of Sequences: 219361 Number of extensions: 1303566 Number of successful extensions: 2897 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2897 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
