ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8n03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 152 ttactgttaaaggagttccacctcattcgatctgcaaatttatctccttgtcaacgctct 211 ||||||||||||| || ||||||| |||||||||||||| |||||||||| |||| || | Sbjct: 29508299 ttactgttaaaggtgtaccacctctttcgatctgcaaatctatctccttgccaacactgt 29508358 Query: 212 cgtcaagcaaggactccatagtgagaaattttgttacaacctg 254 | |||||||||| |||||| | |||||| | |||||||||||| Sbjct: 29508359 catcaagcaaggtctccattgcgagaaactgtgttacaacctg 29508401 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ttttgttacaacctgtaaat 259 |||||||||||||||||||| Sbjct: 19009351 ttttgttacaacctgtaaat 19009370
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 101 bits (51), Expect = 2e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 152 ttactgttaaaggagttccacctcattcgatctgcaaatttatctccttgtcaacgctct 211 ||||||||||||| || ||||||| |||||||||||||| |||||||||| |||| || | Sbjct: 103329 ttactgttaaaggtgtaccacctctttcgatctgcaaatctatctccttgccaacactgt 103388 Query: 212 cgtcaagcaaggactccatagtgagaaattttgttacaacctg 254 | |||||||||| |||||| | |||||| | |||||||||||| Sbjct: 103389 catcaagcaaggtctccattgcgagaaactgtgttacaacctg 103431
>ref|XM_467437.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3793 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 152 ttactgttaaaggagttccacctcattcgatctgcaaatttatctccttgtcaacgctct 211 ||||||||||||| || ||||||| |||||||||||||| |||||||||| |||| || | Sbjct: 1250 ttactgttaaaggtgtaccacctctttcgatctgcaaatctatctccttgccaacactgt 1191 Query: 212 cgtcaagcaaggactccatagtgagaaattttgttacaacct 253 | |||||||||| |||||| | |||||| | ||||||||||| Sbjct: 1190 catcaagcaaggtctccattgcgagaaactgtgttacaacct 1149
>dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I02, full insert sequence Length = 3793 Score = 99.6 bits (50), Expect = 9e-18 Identities = 89/102 (87%) Strand = Plus / Minus Query: 152 ttactgttaaaggagttccacctcattcgatctgcaaatttatctccttgtcaacgctct 211 ||||||||||||| || ||||||| |||||||||||||| |||||||||| |||| || | Sbjct: 1250 ttactgttaaaggtgtaccacctctttcgatctgcaaatctatctccttgccaacactgt 1191 Query: 212 cgtcaagcaaggactccatagtgagaaattttgttacaacct 253 | |||||||||| |||||| | |||||| | ||||||||||| Sbjct: 1190 catcaagcaaggtctccattgcgagaaactgtgttacaacct 1149
>emb|AL713998.7| Human DNA sequence from clone RP11-301G19 on chromosome 6, complete sequence Length = 184887 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 aaattaaaataacatggaaaat 322 |||||||||||||||||||||| Sbjct: 62735 aaattaaaataacatggaaaat 62714
>gb|AF210616.1|AF210616 Zea mays P2 protein (P2) gene, complete cds Length = 12634 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 329 gtgaaaagaaatatagtgaaca 350 |||||||||||||||||||||| Sbjct: 3535 gtgaaaagaaatatagtgaaca 3556
>gb|AC012680.5|AC012680 Arabidopsis thaliana chromosome 1 BAC T11I11 genomic sequence, complete sequence Length = 69506 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 275 tgaataagaaattaatgtggta 296 |||||||||||||||||||||| Sbjct: 17759 tgaataagaaattaatgtggta 17738
>emb|AL133305.3|CNS01DUO Human chromosome 14 DNA sequence BAC R-66M11 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 159524 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 taaaaatactccagcaaggaat 422 |||||||||||||||||||||| Sbjct: 19871 taaaaatactccagcaaggaat 19850
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 252 ctgtaaatagttaagaacatc 272 ||||||||||||||||||||| Sbjct: 2933061 ctgtaaatagttaagaacatc 2933041
>emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chromosome 4 Contains the 3' end of the Dbccr1 gene for deleted in bladder cancer chromosome region candidate 1 (human), complete sequence Length = 203865 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 tgtcctctacttcttttgggt 130 ||||||||||||||||||||| Sbjct: 175134 tgtcctctacttcttttgggt 175154
>emb|BX470065.7| Zebrafish DNA sequence from clone DKEY-105H11 in linkage group 24, complete sequence Length = 198444 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 447 taaatgacagtacttcagaaaatat 471 |||||| |||||||||||||||||| Sbjct: 109935 taaatgtcagtacttcagaaaatat 109959
>gb|AC090115.15| Homo sapiens 12q BAC RP11-762H13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 71291 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 302 aattaaaataacatggaaaatgcat 326 ||||||||||| ||||||||||||| Sbjct: 4425 aattaaaataatatggaaaatgcat 4449
>dbj|AK083452.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, clone:D030018F13 product:unclassifiable, full insert sequence Length = 4079 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 tatgtcaaattaaaataacat 315 ||||||||||||||||||||| Sbjct: 2751 tatgtcaaattaaaataacat 2771
>emb|AL627134.9| Mouse DNA sequence from clone RP23-71I19 on chromosome 4, complete sequence Length = 172418 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 tatgtcaaattaaaataacat 315 ||||||||||||||||||||| Sbjct: 51164 tatgtcaaattaaaataacat 51184
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cctgtaaatagttaagaaca 270 |||||||||||||||||||| Sbjct: 749751 cctgtaaatagttaagaaca 749770
>ref|XM_421400.1| PREDICTED: Gallus gallus similar to KIAA2019 protein (LOC423497), mRNA Length = 9735 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 atggaaaatgcatcagtgaa 333 |||||||||||||||||||| Sbjct: 8920 atggaaaatgcatcagtgaa 8939
>gb|AC125193.3| Mus musculus BAC clone RP23-268I12 from chromosome 14, complete sequence Length = 167771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 ttaaaataacatggaaaatg 323 |||||||||||||||||||| Sbjct: 156473 ttaaaataacatggaaaatg 156454
>gb|AC146199.2| Pan troglodytes BAC clone RP43-25F11 from 7, complete sequence Length = 186750 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 attttaaaaatactccagca 416 |||||||||||||||||||| Sbjct: 130492 attttaaaaatactccagca 130473
>emb|CR626887.6| Zebrafish DNA sequence from clone DKEY-46I14 in linkage group 15, complete sequence Length = 198090 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 aaatgacagtacttcagaaaatat 471 ||||||| |||||||||||||||| Sbjct: 46710 aaatgactgtacttcagaaaatat 46687
>emb|CR457441.5| Zebrafish DNA sequence from clone CH211-181D7 in linkage group 15, complete sequence Length = 135398 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ttttgttacaacctgtaaatagtt 263 |||||||| ||||||||||||||| Sbjct: 21994 ttttgttaaaacctgtaaatagtt 21971
>emb|CR717296.2|CNS0GGEU Tetraodon nigroviridis full-length cDNA Length = 685 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 tatgtcaaattaaaataaca 314 |||||||||||||||||||| Sbjct: 140 tatgtcaaattaaaataaca 159
>gb|AC144819.8| Mus musculus BAC clone RP23-162A11 from chromosome 14, complete sequence Length = 198432 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ttaaaataacatggaaaatg 323 |||||||||||||||||||| Sbjct: 175949 ttaaaataacatggaaaatg 175968
>gb|AE008845.1| Salmonella typhimurium LT2, section 149 of 220 of the complete genome Length = 23018 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 ataagaaattaatgtggtatgtca 301 |||| ||||||||||||||||||| Sbjct: 2537 ataacaaattaatgtggtatgtca 2514
>emb|AL663016.5|OSJN00216 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A22, complete sequence Length = 131489 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 aattcagtttactcttaaat 542 |||||||||||||||||||| Sbjct: 2 aattcagtttactcttaaat 21
>emb|AL731632.2|OSJN00275 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0042I07, complete sequence Length = 129198 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 aattcagtttactcttaaat 542 |||||||||||||||||||| Sbjct: 127398 aattcagtttactcttaaat 127417
>emb|AL627277.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 13/20 Length = 230050 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 ataagaaattaatgtggtatgtca 301 |||| ||||||||||||||||||| Sbjct: 196262 ataacaaattaatgtggtatgtca 196239
>emb|AL670958.4| Mouse DNA sequence from clone RP23-410K19 on chromosome 4, complete sequence Length = 177041 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 agcaaggactccatagtgag 236 |||||||||||||||||||| Sbjct: 23182 agcaaggactccatagtgag 23163
>emb|AL929349.10| Zebrafish DNA sequence from clone CH211-207D24 in linkage group 20 Contains eight CpG islands, complete sequence Length = 196371 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 ttaaaataacatggaaaatg 323 |||||||||||||||||||| Sbjct: 149378 ttaaaataacatggaaaatg 149397
>emb|BX000471.7| Zebrafish DNA sequence from clone DKEY-11C8 in linkage group 20 Contains the gene for a novel protein similar to human transmembrane protein SHREW1 (SHREW1) and three CpG islands, complete sequence Length = 227892 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 aacaagtgcacaacataaca 70 |||||||||||||||||||| Sbjct: 224902 aacaagtgcacaacataaca 224883
>gb|AC093817.3| Homo sapiens BAC clone RP11-364P22 from 4, complete sequence Length = 183186 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 cctgtaaatagttaagaaca 270 |||||||||||||||||||| Sbjct: 59526 cctgtaaatagttaagaaca 59507
>gb|AC011334.5| Homo sapiens chromosome 5 clone CTC-235N17, complete sequence Length = 134413 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 cagcaaggaataatgcataaattt 435 |||||| ||||||||||||||||| Sbjct: 15763 cagcaaagaataatgcataaattt 15786
>gb|AC011354.4|AC011354 Homo sapiens chromosome 5 clone CTC-354F19, complete sequence Length = 133042 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 412 cagcaaggaataatgcataaattt 435 |||||| ||||||||||||||||| Sbjct: 88797 cagcaaagaataatgcataaattt 88820
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 523 aattcagtttactcttaaat 542 |||||||||||||||||||| Sbjct: 18037118 aattcagtttactcttaaat 18037137
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tgttaaaggagttccacctc 175 |||||||||||||||||||| Sbjct: 4089220 tgttaaaggagttccacctc 4089201
>gb|AC158237.2| Mus musculus BAC clone RP23-142I8 from chromosome 9, complete sequence Length = 179606 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 277 aataagaaattaatgtggtatgtc 300 ||||||||| |||||||||||||| Sbjct: 37507 aataagaaactaatgtggtatgtc 37530
>gb|AC079235.7| Homo sapiens BAC clone RP11-495O23 from 2, complete sequence Length = 212237 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aaattaaaataacatggaaa 320 |||||||||||||||||||| Sbjct: 177509 aaattaaaataacatggaaa 177528
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cctgtaaatagttaagaaca 270 |||||||||||||||||||| Sbjct: 745908 cctgtaaatagttaagaaca 745927
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 ataagaaattaatgtggtatgtca 301 |||| ||||||||||||||||||| Sbjct: 3125193 ataacaaattaatgtggtatgtca 3125170
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0036B04 Length = 136159 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tgttaaaggagttccacctc 175 |||||||||||||||||||| Sbjct: 22479 tgttaaaggagttccacctc 22460
>emb|BX572085.6| Mouse DNA sequence from clone RP23-211E14 on chromosome 4, complete sequence Length = 147505 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 462 cagaaaatatggagtaatgc 481 |||||||||||||||||||| Sbjct: 109290 cagaaaatatggagtaatgc 109309
>dbj|AP005842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22 Length = 68256 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ttttgttacaacctgtaaat 259 |||||||||||||||||||| Sbjct: 64672 ttttgttacaacctgtaaat 64691
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17 Length = 149142 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 ttttgttacaacctgtaaat 259 |||||||||||||||||||| Sbjct: 14872 ttttgttacaacctgtaaat 14891
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 ataagaaattaatgtggtatgtca 301 |||| ||||||||||||||||||| Sbjct: 3157757 ataacaaattaatgtggtatgtca 3157734
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 278 ataagaaattaatgtggtatgtca 301 |||| ||||||||||||||||||| Sbjct: 3275829 ataacaaattaatgtggtatgtca 3275806
>gb|AC154594.2| Mus musculus BAC clone RP23-350L7 from chromosome 14, complete sequence Length = 195046 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 catgtcctctacttcttttg 127 |||||||||||||||||||| Sbjct: 76588 catgtcctctacttcttttg 76569
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cctgtaaatagttaagaaca 270 |||||||||||||||||||| Sbjct: 794620 cctgtaaatagttaagaaca 794639 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 cctgtaaatagttaagaaca 270 |||||||||||||||||||| Sbjct: 778822 cctgtaaatagttaagaaca 778803
>emb|AL935335.5| Zebrafish DNA sequence from clone CH211-244M22, complete sequence Length = 197549 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 aaatgacagtacttcagaaaatat 471 ||||||| |||||||||||||||| Sbjct: 24992 aaatgactgtacttcagaaaatat 24969
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cctgtaaatagttaagaaca 270 |||||||||||||||||||| Sbjct: 2056769 cctgtaaatagttaagaaca 2056788
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 cctgtaaatagttaagaaca 270 |||||||||||||||||||| Sbjct: 796011 cctgtaaatagttaagaaca 796030 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,896,860 Number of Sequences: 3902068 Number of extensions: 6896860 Number of successful extensions: 134118 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133716 Number of HSP's gapped (non-prelim): 402 length of query: 547 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 524 effective length of database: 17,143,297,704 effective search space: 8983087996896 effective search space used: 8983087996896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
