>gb|AY112197.1| Zea mays CL5367_1 mRNA sequence
          Length = 880

 Score =  212 bits (107), Expect = 1e-51
 Identities = 146/159 (91%)
 Strand = Plus / Minus

                                                                       
Query: 477 tgggcttgtgcatatgatctatcacggaagtccttcgataaatctttatctatacccttc 536
           ||||||||||||||||| |  |||||||| ||||| |||| ||||| |||||||||||||
Sbjct: 344 tgggcttgtgcatatgaccgttcacggaaatcctttgatagatcttcatctatacccttc 285

                                                                       
Query: 537 attaagcttgcaagaacaccagcagcatgctccctgacctcaacttggttatccacaagt 596
           ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 284 attaagcttgcaagaacaccagcagcatgctccctaacctcaacttggttgtccacaagt 225

                                                  
Query: 597 aacttctcgattgtttgccaaatttgtgatttctctgag 635
           || || || ||||||||||| ||||||||||||||||||
Sbjct: 224 aaattttctattgtttgccagatttgtgatttctctgag 186



 Score =  151 bits (76), Expect = 3e-33
 Identities = 225/275 (81%), Gaps = 1/275 (0%)
 Strand = Plus / Minus

                                                                       
Query: 160 aatctaagcaaagtatgatgacgaggacgatgtatcacggnaggacctccaattcgtctt 219
           ||||||||| ||||| || || ||||| |||||||||||| || ||||||| ||||||||
Sbjct: 654 aatctaagcgaagtacgacgaggaggaagatgtatcacgg-agaacctccagttcgtctt 596

                                                                       
Query: 220 ctgtgaaggcatccttctggatgctccaagtgtcggcatgtgtcctcttgaactcggcaa 279
           | ||||| || ||||||||||||||||| ||||| ||||| || | ||| || || ||||
Sbjct: 595 cagtgaatgcgtccttctggatgctccatgtgtcagcatgggtgcgcttaaattctgcaa 536

                                                                       
Query: 280 cagcctttgtcacagtagattttacaggagacggttcgcggatgaagtgggccagtagtg 339
           |||| || || || || ||| ||| |      || || ||||||||| | || ||||| |
Sbjct: 535 cagctttcgtgactgttgatcttatannnnnaggctcccggatgaagcgagcaagtagcg 476

                                                                       
Query: 340 ttacatgaccaggaagccagcttggcatgtcgtatgggacagaaagcaccgaagccgtca 399
             |||| |  |||||||||||| |||||||||||||| |||||||| |||||||| ||||
Sbjct: 475 agacattagaaggaagccagctaggcatgtcgtatggaacagaaaggaccgaagctgtca 416

                                              
Query: 400 gagcaagtactgcaccatggatggtagcaacagaa 434
            |||||| |||||||||||||||||| ||||||||
Sbjct: 415 aagcaaggactgcaccatggatggtaccaacagaa 381

>gb|AY596605.1| Saccharum officinarum clone SCQGLR1019F04, complete sequence
          Length = 2791

 Score =  208 bits (105), Expect = 2e-50
 Identities = 150/165 (90%)
 Strand = Plus / Minus

                                                                        
Query: 471  atacgttgggcttgtgcatatgatctatcacggaagtccttcgataaatctttatctata 530
            ||||| || |||||||||||||| |  |||||||| ||||| |||| ||||| |||||||
Sbjct: 2319 atacgctgagcttgtgcatatgaccgttcacggaaatcctttgatagatcttcatctata 2260

                                                                        
Query: 531  cccttcattaagcttgcaagaacaccagcagcatgctccctgacctcaacttggttatcc 590
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 2259 cccttcattaagcttgcaagaacaccagcagcatgctccctaacctcaacttggttgtcc 2200

                                                         
Query: 591  acaagtaacttctcgattgtttgccaaatttgtgatttctctgag 635
            |||||||| || || ||||||||||| ||||||||||||||||||
Sbjct: 2199 acaagtaaattttctattgtttgccagatttgtgatttctctgag 2155



 Score =  178 bits (90), Expect = 1e-41
 Identities = 229/274 (83%), Gaps = 1/274 (0%)
 Strand = Plus / Minus

                                                                        
Query: 160  aatctaagcaaagtatgatgacgaggacgatgtatcacggnaggacctccaattcgtctt 219
            ||||||||||||||| || || ||||| |||||||||||| || ||||||| ||||||||
Sbjct: 2623 aatctaagcaaagtacgaggaggaggaagatgtatcacgg-agaacctccagttcgtctt 2565

                                                                        
Query: 220  ctgtgaaggcatccttctggatgctccaagtgtcggcatgtgtcctcttgaactcggcaa 279
            | || || || ||||||||||||||||| ||||| ||||| || | ||| || || ||||
Sbjct: 2564 cagtaaatgcgtccttctggatgctccatgtgtcagcatgggtgcgcttaaattctgcaa 2505

                                                                        
Query: 280  cagcctttgtcacagtagattttacaggagacggttcgcggatgaagtgggccagtagtg 339
            |||| || || || || ||| |||  || || || || ||||||||| | || ||||| |
Sbjct: 2504 cagctttcgtgacggttgatcttatgggggaaggctcccggatgaagcgagcaagtagcg 2445

                                                                        
Query: 340  ttacatgaccaggaagccagcttggcatgtcgtatgggacagaaagcaccgaagccgtca 399
            | ||||||  |||||||||||| |||||||||||||| |||||||| || ||||| ||||
Sbjct: 2444 tgacatgagaaggaagccagctaggcatgtcgtatggaacagaaaggactgaagctgtca 2385

                                              
Query: 400  gagcaagtactgcaccatggatggtagcaacaga 433
             |||||| ||||||||||||||||||||||||||
Sbjct: 2384 aagcaaggactgcaccatggatggtagcaacaga 2351

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                            
Query: 360      cttggcatgtcgtatgggacagaaagcaccgaagccgtcagagcaagtactgcaccatgg 419
                ||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||
Sbjct: 11123767 cttggcatgtcgtatggaacagaaagcactgaagccgtcaaagcaagaactgcaccatgg 11123708

                                            
Query: 420      atggtagcaacagaatggcccgactttg 447
                || ||||||||||| ||||| |||||||
Sbjct: 11123707 atagtagcaacagagtggcctgactttg 11123680



 Score =  113 bits (57), Expect = 7e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                            
Query: 205      cctccaattcgtcttctgtgaaggcatccttctggatgctccaagtgtcggcatgtgtcc 264
                |||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||
Sbjct: 11124076 cctccaattcgtcttccgtgaaggcctccttctggatgctccatgtgtcagcatgcgtcc 11124017

                                                                            
Query: 265      tcttgaactcggcaacagcctttgtcacagtagattttacaggagacggttcgcggatga 324
                 |||||| ||||| || || ||||| || || |||||||  ||||| || || || || |
Sbjct: 11124016 gcttgaattcggcgacggcttttgtgaccgttgattttatgggagagggctcacgaataa 11123957

                                                     
Query: 325      agtgggccagtagtgttacatgaccaggaagccagct 361
                || | ||||| || |||||||||| ||||||||||||
Sbjct: 11123956 agcgtgccagcagagttacatgactaggaagccagct 11123920



 Score =  109 bits (55), Expect = 1e-20
 Identities = 100/115 (86%)
 Strand = Plus / Minus

                                                                            
Query: 462      gtatcaaggatacgttgggcttgtgcatatgatctatcacggaagtccttcgataaatct 521
                |||| ||||||||| || |||||||||||||| | ||| || |||||||| || |  |||
Sbjct: 11123559 gtatgaaggatacgctgagcttgtgcatatgaccgatctcgaaagtccttagagaggtct 11123500

                                                                       
Query: 522      ttatctatacccttcattaagcttgcaagaacaccagcagcatgctccctgacct 576
                |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 11123499 ttatctatgcccttcattaagcttgcaaggacaccagcagcatgttccctaacct 11123445



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 59/62 (95%)
 Strand = Plus / Minus

                                                                            
Query: 574      cctcaacttggttatccacaagtaacttctcgattgtttgccaaatttgtgatttctctg 633
                ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 11123241 cctcaacttgactatccacaagtaacttctcaattgtttgccaaatttgtgatttctctg 11123182

                  
Query: 634      ag 635
                ||
Sbjct: 11123181 ag 11123180



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                       
Query: 161      atctaagcaaagtatgatgacgaggacgatgtatcacgg 199
                ||||||||||||||||| || ||||||||||||||||||
Sbjct: 11124210 atctaagcaaagtatgacgatgaggacgatgtatcacgg 11124172

>dbj|AP004007.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1217_C01
          Length = 100180

 Score =  119 bits (60), Expect = 1e-23
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 360   cttggcatgtcgtatgggacagaaagcaccgaagccgtcagagcaagtactgcaccatgg 419
             ||||||||||||||||| ||||||||||| |||||||||| |||||| ||||||||||||
Sbjct: 53673 cttggcatgtcgtatggaacagaaagcactgaagccgtcaaagcaagaactgcaccatgg 53614

                                         
Query: 420   atggtagcaacagaatggcccgactttg 447
             || ||||||||||| ||||| |||||||
Sbjct: 53613 atagtagcaacagagtggcctgactttg 53586



 Score =  113 bits (57), Expect = 7e-22
 Identities = 132/157 (84%)
 Strand = Plus / Minus

                                                                         
Query: 205   cctccaattcgtcttctgtgaaggcatccttctggatgctccaagtgtcggcatgtgtcc 264
             |||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||
Sbjct: 53982 cctccaattcgtcttccgtgaaggcctccttctggatgctccatgtgtcagcatgcgtcc 53923

                                                                         
Query: 265   tcttgaactcggcaacagcctttgtcacagtagattttacaggagacggttcgcggatga 324
              |||||| ||||| || || ||||| || || |||||||  ||||| || || || || |
Sbjct: 53922 gcttgaattcggcgacggcttttgtgaccgttgattttatgggagagggctcacgaataa 53863

                                                  
Query: 325   agtgggccagtagtgttacatgaccaggaagccagct 361
             || | ||||| || |||||||||| ||||||||||||
Sbjct: 53862 agcgtgccagcagagttacatgactaggaagccagct 53826



 Score =  109 bits (55), Expect = 1e-20
 Identities = 100/115 (86%)
 Strand = Plus / Minus

                                                                         
Query: 462   gtatcaaggatacgttgggcttgtgcatatgatctatcacggaagtccttcgataaatct 521
             |||| ||||||||| || |||||||||||||| | ||| || |||||||| || |  |||
Sbjct: 53465 gtatgaaggatacgctgagcttgtgcatatgaccgatctcgaaagtccttagagaggtct 53406

                                                                    
Query: 522   ttatctatacccttcattaagcttgcaagaacaccagcagcatgctccctgacct 576
             |||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct: 53405 ttatctatgcccttcattaagcttgcaaggacaccagcagcatgttccctaacct 53351



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 59/62 (95%)
 Strand = Plus / Minus

                                                                         
Query: 574   cctcaacttggttatccacaagtaacttctcgattgtttgccaaatttgtgatttctctg 633
             ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 53147 cctcaacttgactatccacaagtaacttctcaattgtttgccaaatttgtgatttctctg 53088

               
Query: 634   ag 635
             ||
Sbjct: 53087 ag 53086



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                    
Query: 161   atctaagcaaagtatgatgacgaggacgatgtatcacgg 199
             ||||||||||||||||| || ||||||||||||||||||
Sbjct: 54116 atctaagcaaagtatgacgatgaggacgatgtatcacgg 54078

>dbj|AB108068.1| Phleum pratense DNA, SSR, microsatellite A01-A09
          Length = 453

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                     
Query: 574 cctcaacttggttatccacaagtaacttctcgattgtttgccaaatttgtgatttctc 631
           |||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||
Sbjct: 267 cctcaacttggttatccacaagtagcttctcaattgtttgccaaatttgtaatttctc 324



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                          
Query: 546 gcaagaacaccagcagcatgctccctgacct 576
           |||||||||||||||||||||||||||||||
Sbjct: 1   gcaagaacaccagcagcatgctccctgacct 31

>gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, complete sequence
          Length = 233089

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 105   cctggccaaattcataaaatct 126
             ||||||||||||||||||||||
Sbjct: 61716 cctggccaaattcataaaatct 61737

>dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867O8, complete
             sequence
          Length = 219246

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 105   cctggccaaattcataaaatct 126
             ||||||||||||||||||||||
Sbjct: 14635 cctggccaaattcataaaatct 14656

>emb|CR848718.8| Zebrafish DNA sequence from clone DKEY-5N8 in linkage group 9, complete
              sequence
          Length = 253450

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 129    tatcactgtattgttaaaata 149
              |||||||||||||||||||||
Sbjct: 120047 tatcactgtattgttaaaata 120067

>emb|AL358152.9| Human DNA sequence from clone RP4-768P8 on chromosome 1 Contains the 3'
             end of the C1orf21 gene for chromosome 1 open reading
             frame 21, complete sequence
          Length = 42377

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    agtcttcttcctggccaaat 115
             ||||||||||||||||||||
Sbjct: 10327 agtcttcttcctggccaaat 10346

>emb|AL136382.6| Human DNA sequence from clone RP5-977L11 on chromosome 1p22.3-31.2
             Contains the 3' end of a novel gene (KIAA1229), complete
             sequence
          Length = 136387

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 611   ttgccaaatttgtgatttct 630
             ||||||||||||||||||||
Sbjct: 63786 ttgccaaatttgtgatttct 63805

>ref|XM_966315.1| PREDICTED: Tribolium castaneum similar to CG7523-PA (LOC660053), mRNA
          Length = 1425

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 601  tctcgattgtttgccaaatttgtg 624
            |||||||||||| |||||||||||
Sbjct: 1272 tctcgattgtttcccaaatttgtg 1295

>gb|AC073561.4| Mus musculus strain C57BL/6J chromosome 12 clone RP23-18L19, complete
              sequence
          Length = 184953

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 12     gtatgtaactatgnaatatatga 34
              ||||||||||||| |||||||||
Sbjct: 109964 gtatgtaactatggaatatatga 109942

>gb|AC090843.4| Mus musculus strain C57BL/6J clone RP23-31P8, complete sequence
          Length = 202704

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 12    gtatgtaactatgnaatatatga 34
             ||||||||||||| |||||||||
Sbjct: 17076 gtatgtaactatggaatatatga 17054

>gb|AF213759.1|AF213759 Primula veitchiana NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 1801

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  aagtccttcgataaatcttt 523
            ||||||||||||||||||||
Sbjct: 1618 aagtccttcgataaatcttt 1637

>gb|AF213758.1|AF213758 Primula sikkimensis NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  aagtccttcgataaatcttt 523
            ||||||||||||||||||||
Sbjct: 1618 aagtccttcgataaatcttt 1637

>gb|AF213755.1|AF213755 Primula gaubaeana NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  aagtccttcgataaatcttt 523
            ||||||||||||||||||||
Sbjct: 1618 aagtccttcgataaatcttt 1637

>gb|AF213754.1|AF213754 Primula edelbergii NADH dehydrogenase subunit F (ndhF) gene, partial
            cds; chloroplast gene for chloroplast product
          Length = 1920

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 504  aagtccttcgataaatcttt 523
            ||||||||||||||||||||
Sbjct: 1618 aagtccttcgataaatcttt 1637

>gb|AF435762.1| Lithasia geniculata pinguis UAG407 cytochrome c oxidase subunit I
           (COI) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 890

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 tgcaccatggatggtagcaa 429
           ||||||||||||||||||||
Sbjct: 436 tgcaccatggatggtagcaa 417

>gb|AF435761.1| Lithasia geniculata pinguis UAG407 cytochrome c oxidase subunit I
           (COI) gene, partial cds; mitochondrial gene for
           mitochondrial product
          Length = 890

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 tgcaccatggatggtagcaa 429
           ||||||||||||||||||||
Sbjct: 436 tgcaccatggatggtagcaa 417

>emb|BX548063.3| Zebrafish DNA sequence from clone CH211-198J3 in linkage group 20,
              complete sequence
          Length = 200237

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 204    acctccaattcgtcttctgtgaag 227
              ||||||||||||| ||||||||||
Sbjct: 134288 acctccaattcgtgttctgtgaag 134311

>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 12      gtatgtaactatgnaatatatga 34
               ||||||||||||| |||||||||
Sbjct: 1556657 gtatgtaactatggaatatatga 1556679

>gb|AC107884.15| Homo sapiens chromosome 11, clone CTD-2516F10, complete sequence
          Length = 177416

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    tgctatcactgtattgttaa 145
              ||||||||||||||||||||
Sbjct: 101424 tgctatcactgtattgttaa 101443


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,176,526
Number of Sequences: 3902068
Number of extensions: 5176526
Number of successful extensions: 87949
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87874
Number of HSP's gapped (non-prelim): 72
length of query: 635
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 612
effective length of database: 17,143,297,704
effective search space: 10491698194848
effective search space used: 10491698194848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)