ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1i01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WFDC9_RAT (Q6IE41) Protein WFDC9 precursor 30 2.9
2P53_RABIT (Q95330) Cellular tumor antigen p53 (Tumor suppressor ... 28 8.6
3SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precurs... 28 8.6

>WFDC9_RAT (Q6IE41) Protein WFDC9 precursor|
          Length = 74

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +3

Query: 48  HKIAYFLYLFALLPQIKARNEQILHHQTCKYHILGNLLRRIQN--QPNWACCWCCC 209
           H I  FL++F  L +     EQ       ++   G    ++Q    PN+ CCW  C
Sbjct: 13  HGIVVFLHVFGSLKEKPEEIEQCWVQPPARF--CGRRCTKVQKCVSPNYTCCWTYC 66



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>P53_RABIT (Q95330) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 391

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 34  FSHADTKLHISCIYLPCYHKLRQEMNRFCIIK 129
           F H+ T   ++C Y PC +KL  ++ + C ++
Sbjct: 110 FLHSGTAKSVTCTYSPCLNKLFCQLAKTCPVQ 141



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>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL|
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 144 ILGNLLRRIQNQPNWACCWCCCWI-RSD 224
           I+G+L+  +      ACC CCCW  RSD
Sbjct: 424 IVGSLVPLLLLFLGLACCACCCWAPRSD 451


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,094,530
Number of Sequences: 219361
Number of extensions: 687162
Number of successful extensions: 1691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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