ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 58 5e-05
2dbj|AK072503.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-05
3dbj|AK059973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-05
4dbj|AK059006.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 5e-05
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 58 5e-05
6emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa... 58 5e-05
7gb|AY029558.1| Zea mays putative methyl-binding domain protein M... 50 0.012
8gb|AY106371.1| Zea mays PCO124729 mRNA sequence 50 0.012
9gb|AC115800.13| Mus musculus chromosome 8, clone RP23-407E22, co... 46 0.19
10dbj|AK138391.1| Mus musculus adult male hypothalamus cDNA, RIKEN... 46 0.19
11dbj|AK162519.1| Mus musculus adult male urinary bladder cDNA, RI... 46 0.19
12gb|AC113484.14| Mus musculus chromosome 8, clone RP23-343H23, co... 46 0.19
13gb|AY029559.1| Zea mays putative methyl-binding domain protein M... 44 0.75
14gb|BT018441.1| Zea mays clone EL01N0372H11.d mRNA sequence 44 0.75
15gb|AY103948.1| Zea mays PCO124731 mRNA sequence 44 0.75
16gb|BT019166.1| Zea mays clone Contig834.F mRNA sequence 42 3.0
17gb|AC146111.3| Pan troglodytes BAC clone RP43-38O16 from 7, comp... 42 3.0
18gb|AC110883.12| Mus musculus chromosome 8, clone RP23-200N24, co... 42 3.0
19gb|AC121836.2| Mus musculus BAC clone RP24-73L11 from 8, complet... 42 3.0
20emb|X91855.1|PKMSP1GEN P.knowlesi MSP-1 gene 42 3.0
21gb|AY351908.2| Hortaea acidophila laccase I gene, complete cds 42 3.0
22ref|XM_307789.2| Anopheles gambiae str. PEST ENSANGP00000012955 ... 42 3.0
23dbj|AP003466.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 3.0 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 237      cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 289
                ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 26459479 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 26459531
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>dbj|AK072503.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023126H05, full
            insert sequence
          Length = 1525

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 237  cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 289
            ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 1009 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 957
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>dbj|AK059973.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-H11, full
           insert sequence
          Length = 1028

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 237 cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 289
           ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 458 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 406
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>dbj|AK059006.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-H05, full
            insert sequence
          Length = 1361

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 237  cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 289
            ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 1051 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 999
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 237      cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 289
                ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 26387648 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 26387700
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>emb|AL732532.4|CNS08C97 Oryza sativa chromosome 12, . BAC OSJNBa0027I07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146366

 Score = 58.0 bits (29), Expect = 5e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                  
Query: 237   cttcaggtgcacttcaccgtcgaggcgccaggcgacagctgcccgttgttgac 289
             ||||||||||||||||| |  ||||| |||| || ||||||||||||||||||
Sbjct: 82597 cttcaggtgcacttcacggcagaggcaccagccggcagctgcccgttgttgac 82545
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>gb|AY029558.1| Zea mays putative methyl-binding domain protein MBD105 mRNA, complete
            cds
          Length = 1777

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 236  gcttcaggtgcacttcaccgtcgag 260
            |||||||||||||||||||||||||
Sbjct: 1434 gcttcaggtgcacttcaccgtcgag 1410



 Score = 44.1 bits (22), Expect = 0.75
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 775 ctcagctggcttgacatcttccttct 800
           |||||||||||||||||||| |||||
Sbjct: 699 ctcagctggcttgacatctttcttct 674
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>gb|AY106371.1| Zea mays PCO124729 mRNA sequence
          Length = 872

 Score = 50.1 bits (25), Expect = 0.012
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 236 gcttcaggtgcacttcaccgtcgag 260
           |||||||||||||||||||||||||
Sbjct: 500 gcttcaggtgcacttcaccgtcgag 476
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>gb|AC115800.13| Mus musculus chromosome 8, clone RP23-407E22, complete sequence
          Length = 228513

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 341   ggcatctgatttggtttcagata 363
             |||||||||||||||||||||||
Sbjct: 16031 ggcatctgatttggtttcagata 16009
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>dbj|AK138391.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230089I11 product:unclassifiable, full
            insert sequence
          Length = 1532

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 341  ggcatctgatttggtttcagata 363
            |||||||||||||||||||||||
Sbjct: 1105 ggcatctgatttggtttcagata 1083
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>dbj|AK162519.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530052E02
           product:unclassifiable, full insert sequence
          Length = 950

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 341 ggcatctgatttggtttcagata 363
           |||||||||||||||||||||||
Sbjct: 528 ggcatctgatttggtttcagata 506
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>gb|AC113484.14| Mus musculus chromosome 8, clone RP23-343H23, complete sequence
          Length = 176303

 Score = 46.1 bits (23), Expect = 0.19
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 341    ggcatctgatttggtttcagata 363
              |||||||||||||||||||||||
Sbjct: 143171 ggcatctgatttggtttcagata 143149
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>gb|AY029559.1| Zea mays putative methyl-binding domain protein MBD106 mRNA,
           complete cds
          Length = 1700

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 380 agcaggctcgccaggcgcagcaactgagttctcagttggtttgctt 425
           |||||||||| |||| ||||   |||||||||||||||| ||||||
Sbjct: 767 agcaggctcggcaggagcaggggctgagttctcagttgggttgctt 722



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 340  cggcatctgatttggtttcag 360
            |||||||||||||||||||||
Sbjct: 1188 cggcatctgatttggtttcag 1168



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 340  cggcatctgatttggtttcag 360
            |||||||||||||||||||||
Sbjct: 1092 cggcatctgatttggtttcag 1072
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>gb|BT018441.1| Zea mays clone EL01N0372H11.d mRNA sequence
          Length = 1502

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 775 ctcagctggcttgacatcttccttct 800
           |||||||||||||||||||| |||||
Sbjct: 315 ctcagctggcttgacatctttcttct 290
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>gb|AY103948.1| Zea mays PCO124731 mRNA sequence
          Length = 1792

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 380 agcaggctcgccaggcgcagcaactgagttctcagttggtttgctt 425
           |||||||||| |||| ||||   |||||||||||||||| ||||||
Sbjct: 815 agcaggctcggcaggagcaggggctgagttctcagttgggttgctt 770



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 340  cggcatctgatttggtttcag 360
            |||||||||||||||||||||
Sbjct: 1236 cggcatctgatttggtttcag 1216



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 340  cggcatctgatttggtttcag 360
            |||||||||||||||||||||
Sbjct: 1140 cggcatctgatttggtttcag 1120
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>gb|BT019166.1| Zea mays clone Contig834.F mRNA sequence
          Length = 982

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 340 cggcatctgatttggtttcag 360
           |||||||||||||||||||||
Sbjct: 542 cggcatctgatttggtttcag 522



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 340 cggcatctgatttggtttcag 360
           |||||||||||||||||||||
Sbjct: 446 cggcatctgatttggtttcag 426



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 340 cggcatctgatttggtttcag 360
           |||||||||||||||||||||
Sbjct: 296 cggcatctgatttggtttcag 276
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>gb|AC146111.3| Pan troglodytes BAC clone RP43-38O16 from 7, complete sequence
          Length = 158242

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 532   cttccttcttgtcttccattgctgg 556
             |||||||||||||||||| ||||||
Sbjct: 93057 cttccttcttgtcttccagtgctgg 93081
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>gb|AC110883.12| Mus musculus chromosome 8, clone RP23-200N24, complete sequence
          Length = 293104

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 164    cagagactgattgattacaat 184
              |||||||||||||||||||||
Sbjct: 181754 cagagactgattgattacaat 181734
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>gb|AC121836.2| Mus musculus BAC clone RP24-73L11 from 8, complete sequence
          Length = 195192

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 164   cagagactgattgattacaat 184
             |||||||||||||||||||||
Sbjct: 83841 cagagactgattgattacaat 83821
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>emb|X91855.1|PKMSP1GEN P.knowlesi MSP-1 gene
          Length = 981

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 532 cttccttcttgtcttccattg 552
           |||||||||||||||||||||
Sbjct: 913 cttccttcttgtcttccattg 893
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>gb|AY351908.2| Hortaea acidophila laccase I gene, complete cds
          Length = 1998

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 58   ggcacggtgaccaacgccggc 78
            |||||||||||||||||||||
Sbjct: 1687 ggcacggtgaccaacgccggc 1707
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>ref|XM_307789.2| Anopheles gambiae str. PEST ENSANGP00000012955
           (ENSANGG00000010466), partial mRNA
          Length = 678

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 552 gctggagacggaacggcatca 572
           |||||||||||||||||||||
Sbjct: 258 gctggagacggaacggcatca 278
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>dbj|AP003466.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1047C11
          Length = 154371

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 679   ccccagctggcttgatatctt 699
             |||||||||||||||||||||
Sbjct: 57539 ccccagctggcttgatatctt 57519



 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 631   ccccagctggcttgatatctt 651
             |||||||||||||||||||||
Sbjct: 57539 ccccagctggcttgatatctt 57519


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,443,638
Number of Sequences: 3902068
Number of extensions: 7443638
Number of successful extensions: 178613
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 178490
Number of HSP's gapped (non-prelim): 123
length of query: 855
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 832
effective length of database: 17,143,297,704
effective search space: 14263223689728
effective search space used: 14263223689728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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