ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102592.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 4e-42
2gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome... 90 1e-14
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
4dbj|AK068959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
5gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 90 1e-14
6ref|NM_189606.2| Oryza sativa (japonica cultivar-group), mRNA 88 4e-14
7gb|AF503585.1| Oryza sativa (indica cultivar-group) early drough... 88 4e-14
8dbj|AB117991.1| Oryza sativa (japonica cultivar-group) bip104 mR... 88 4e-14
9dbj|AK066832.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 4e-14
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
11dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
12emb|AJ244017.1|ZMA244017 Zea mays mRNA for SSRP1 protein 54 6e-04
13gb|AY110129.1| Zea mays CL1186_1 mRNA sequence 54 6e-04
14gb|AC182660.2| Populus trichocarpa clone Pop1-125N19, complete s... 46 0.14
15emb|X97906.1|VFHMG V.faba mRNA for transcription factor containi... 46 0.14
16gb|AC130799.19| Medicago truncatula clone mth2-34b13, complete s... 46 0.14
17dbj|AP006692.1| Lotus japonicus genomic DNA, chromosome 2, clone... 46 0.14
18ref|XM_529289.1| PREDICTED: Pan troglodytes LOC450271 (LOC450271... 44 0.55
19emb|AL513303.11| Human DNA sequence from clone RP11-464C19 on ch... 44 0.55
20gb|AC073366.4| Homo sapiens chromosome 10 clone RP11-140C5, comp... 44 0.55
21gb|AC010547.9| Homo sapiens chromosome 16 clone RP11-510M2, comp... 44 0.55
22gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-... 42 2.2
23gb|AC121771.3| Mus musculus BAC clone RP23-348H21 from chromosom... 42 2.2
24gb|AC122832.4| Mus musculus BAC clone RP23-179D3 from 12, comple... 42 2.2
25gb|AC140916.17| Medicago truncatula clone mth2-12b2, complete se... 42 2.2
26gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's H... 42 2.2
27emb|AL731677.9| Mouse DNA sequence from clone RP23-41J17 on chro... 42 2.2
28gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Par... 42 2.2
29gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosom... 42 2.2
30gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 42 2.2
31gb|AC154173.3| Mus musculus BAC clone RP23-3C4 from 3, complete ... 42 2.2
32emb|CT025738.5| Mouse DNA sequence from clone RP24-378G24 on chr... 42 2.2
33gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
34gb|AC158939.9| Mus musculus chromosome 5, clone RP23-204A8, comp... 40 8.5
35gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.5
36gb|AC009600.20| Homo sapiens 2 BAC RP11-436K12 (Roswell Park Can... 40 8.5
37emb|AJ783769.1| Sulfolobus tengchongensis spindle-shaped virus S... 40 8.5
38emb|CR769775.11| Human DNA sequence from clone RP11-449H15 on ch... 40 8.5
39emb|AL513185.12| Human DNA sequence from clone RP11-167P22 on ch... 40 8.5
40emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chr... 40 8.5
41emb|AL355151.11| Human DNA sequence from clone RP11-288C24 on ch... 40 8.5
42emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chro... 40 8.5
43emb|AL158093.8| Human DNA sequence from clone RP5-959I16 on chro... 40 8.5
44gb|AY128421.1| Drosophila melanogaster GH14660 full insert cDNA 40 8.5
45emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0... 40 8.5
46gb|AC099675.2| Homo sapiens chromosome 1 clone RP11-459D6, compl... 40 8.5
47ref|XM_945461.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 8.5
48ref|XM_934015.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 8.5
49gb|AC008288.8|AC008288 Drosophila melanogaster, chromosome 2R, r... 40 8.5
50dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
51gb|AC009342.5|AC009342 Drosophila melanogaster, chromosome 2R, r... 40 8.5
52gb|AC138655.1| Homo sapiens BAC clone RP11-436K12 from 2, comple... 40 8.5
53gb|AC156160.4| Monodelphis domestica, clone XX-23H4, complete se... 40 8.5
54gb|AE003790.2| Drosophila melanogaster chromosome 2R, section 7 ... 40 8.5
55dbj|AP002514.5| Homo sapiens genomic DNA, chromosome 11 clone:CT... 40 8.5
56emb|AL935278.7| Mouse DNA sequence from clone RP23-84E1 on chrom... 40 8.5 
>dbj|AK102592.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098G02, full
            insert sequence
          Length = 2491

 Score =  180 bits (91), Expect = 4e-42
 Identities = 184/215 (85%)
 Strand = Plus / Minus

                                                                        
Query: 252  ccgcggtaagcagcagtctcctctgcatagcgtttcttatccacttgggactgctcaagg 311
            |||||||| || || | |||||| || ||||| ||||| || ||||| |||||||| | |
Sbjct: 2116 ccgcggtaggcggctgactcctccgcgtagcgcttcttgtcaacttgagactgctcgacg 2057

                                                                        
Query: 312  tatggctgcttctcctcagctgacatcttttgccatttctctccaagcttctttgcaata 371
            ||||||||||||||||| |||| ||||||||||||  |||| ||||||||||| ||||| 
Sbjct: 2056 tatggctgcttctcctcggctgtcatcttttgccacctctccccaagcttcttcgcaatc 1997

                                                                        
Query: 372  tctgtggtgctgagttcggggttgatgttcttcaaattagctcgctcagcctttgagaag 431
            ||||||||    || || || ||| ||||||||| ||||||||||||||| |||||||||
Sbjct: 1996 tctgtggtagccagctccggattgctgttcttcagattagctcgctcagcttttgagaag 1937

                                               
Query: 432  tacatgaatggtgctattgctcttttgggggcatt 466
            |||||||||||||| ||||||||||| ||||||||
Sbjct: 1936 tacatgaatggtgcaattgctcttttaggggcatt 1902



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                        
Query: 538  tcttcacaggtggctttgagctactagcttcctttttggaagatttctccttttctccat 597
            |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 1830 tcttcaaaggcgcctttgagctactagcttcctttttggaagatttctccttttctcctc 1771

                                     
Query: 598  cacttatgctggcatcagaaccctc 622
            ||||||  || || |||||||||||
Sbjct: 1770 cacttaaactagcgtcagaaccctc 1746
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>gb|AC135431.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0683B12,
            complete sequence
          Length = 187523

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                     
Query: 410  agctcgctcagcctttgagaagtacatgaatggtgctattgctcttttgggggcatt 466
            |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 7120 agctcgctcagcttttgagaagtacatgaatggtgcaattgctcttttaggggcatt 7064



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                            
Query: 538  tcttcacaggtggctttgagctactagcttcctttttggaagatttct 585
            |||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct: 6992 tcttcaaaggcgcctttgagctactagcttcctttttggaagatttct 6945



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                        
Query: 252  ccgcggtaagcagcagtctcctctgcatagcgtttcttatccacttgggactgctcaagg 311
            |||||||| || || | |||||| || ||||| ||||| || ||||| |||||||| | |
Sbjct: 7521 ccgcggtaggcggctgactcctccgcgtagcgcttcttgtcaacttgagactgctcgacg 7462

                                  
Query: 312  tatggctgcttctcctcagctg 333
            ||||||||||||||||| ||||
Sbjct: 7461 tatggctgcttctcctcggctg 7440



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 335  catcttttgccatttctctccaagcttctttgcaatatctgtggt 379
            ||||||||||||  |||| ||||||||||| ||||| ||||||||
Sbjct: 7339 catcttttgccacctctccccaagcttcttcgcaatctctgtggt 7295
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                        
Query: 410     agctcgctcagcctttgagaagtacatgaatggtgctattgctcttttgggggcatt 466
               |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 4912535 agctcgctcagcttttgagaagtacatgaatggtgcaattgctcttttaggggcatt 4912479



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                               
Query: 538     tcttcacaggtggctttgagctactagcttcctttttggaagatttct 585
               |||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct: 4912407 tcttcaaaggcgcctttgagctactagcttcctttttggaagatttct 4912360



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                           
Query: 252     ccgcggtaagcagcagtctcctctgcatagcgtttcttatccacttgggactgctcaagg 311
               |||||||| || || | |||||| || ||||| ||||| || ||||| |||||||| | |
Sbjct: 4912936 ccgcggtaggcggctgactcctccgcgtagcgcttcttgtcaacttgagactgctcgacg 4912877

                                     
Query: 312     tatggctgcttctcctcagctg 333
               ||||||||||||||||| ||||
Sbjct: 4912876 tatggctgcttctcctcggctg 4912855



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 335     catcttttgccatttctctccaagcttctttgcaatatctgtggt 379
               ||||||||||||  |||| ||||||||||| ||||| ||||||||
Sbjct: 4912754 catcttttgccacctctccccaagcttcttcgcaatctctgtggt 4912710
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>dbj|AK068959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002O22, full
            insert sequence
          Length = 2464

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 123/149 (82%)
 Strand = Plus / Minus

                                                                        
Query: 318  tgcttctcctcagctgacatcttttgccatttctctccaagcttctttgcaatatctgtg 377
            |||||||| ||  ||| ||||||||||||  |||| || |||||||||||||| ||||| 
Sbjct: 1963 tgcttctcttcgcctgtcatcttttgccacatctccccgagcttctttgcaatctctgtt 1904

                                                                        
Query: 378  gtgctgagttcggggttgatgttcttcaaattagctcgctcagcctttgagaagtacatg 437
            ||    |  || || ||| | ||||||| |||  ||||||||||| ||||||||||||||
Sbjct: 1903 gtaggcaaatcaggattgttattcttcatatttcctcgctcagccattgagaagtacatg 1844

                                         
Query: 438  aatggtgctattgctcttttgggggcatt 466
            |||||||  ||||||||||||||||||||
Sbjct: 1843 aatggtgtcattgctcttttgggggcatt 1815



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                       
Query: 534  ttcctcttcacaggtggctttgagctactagcttcctttttggaagatttctccttttc 592
            ||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||
Sbjct: 1753 ttcctcttcacaggtggctttgaactactagcttcctttttggataatttctctttttc 1695
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
              complete sequence
          Length = 187956

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                       
Query: 410    agctcgctcagcctttgagaagtacatgaatggtgctattgctcttttgggggcatt 466
              |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 184943 agctcgctcagcttttgagaagtacatgaatggtgcaattgctcttttaggggcatt 184887



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                              
Query: 538    tcttcacaggtggctttgagctactagcttcctttttggaagatttct 585
              |||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct: 184815 tcttcaaaggcgcctttgagctactagcttcctttttggaagatttct 184768



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                          
Query: 252    ccgcggtaagcagcagtctcctctgcatagcgtttcttatccacttgggactgctcaagg 311
              |||||||| || || | |||||| || ||||| ||||| || ||||| |||||||| | |
Sbjct: 185344 ccgcggtaggcggctgactcctccgcgtagcgcttcttgtcaacttgagactgctcgacg 185285

                                    
Query: 312    tatggctgcttctcctcagctg 333
              ||||||||||||||||| ||||
Sbjct: 185284 tatggctgcttctcctcggctg 185263



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                           
Query: 335    catcttttgccatttctctccaagcttctttgcaatatctgtggt 379
              ||||||||||||  |||| ||||||||||| ||||| ||||||||
Sbjct: 185162 catcttttgccacctctccccaagcttcttcgcaatctctgtggt 185118
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>ref|NM_189606.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2465

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 399  ttcttcaaattagctcgctcagcctttgagaagtacatgaatggtgctattgctcttttg 458
            ||||||| |||  ||||||||||| |||||||||||||||||||||  ||||||||||||
Sbjct: 1882 ttcttcatatttcctcgctcagccattgagaagtacatgaatggtgtcattgctcttttg 1823

                    
Query: 459  ggggcatt 466
            ||||||||
Sbjct: 1822 ggggcatt 1815



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                       
Query: 534  ttcctcttcacaggtggctttgagctactagcttcctttttggaagatttctccttttc 592
            ||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||
Sbjct: 1753 ttcctcttcacaggtggctttgaactactagcttcctttttggataatttctctttttc 1695
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>gb|AF503585.1| Oryza sativa (indica cultivar-group) early drought induced protein
            (R1G1A) mRNA, complete cds
          Length = 2468

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 399  ttcttcaaattagctcgctcagcctttgagaagtacatgaatggtgctattgctcttttg 458
            ||||||| |||  ||||||||||| |||||||||||||||||||||  ||||||||||||
Sbjct: 1862 ttcttcatatttcctcgctcagccattgagaagtacatgaatggtgtcattgctcttttg 1803

                    
Query: 459  ggggcatt 466
            ||||||||
Sbjct: 1802 ggggcatt 1795



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                       
Query: 534  ttcctcttcacaggtggctttgagctactagcttcctttttggaagatttctccttttc 592
            ||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||
Sbjct: 1733 ttcctcttcacaggtggctttgaactactagcttcctttttggataatttctctttttc 1675
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>dbj|AB117991.1| Oryza sativa (japonica cultivar-group) bip104 mRNA for BRI1-KD
           interacting protein 104, partial cds
          Length = 1072

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                       
Query: 399 ttcttcaaattagctcgctcagcctttgagaagtacatgaatggtgctattgctcttttg 458
           ||||||| |||  ||||||||||| |||||||||||||||||||||  ||||||||||||
Sbjct: 474 ttcttcatatttcctcgctcagccattgagaagtacatgaatggtgtcattgctcttttg 415

                   
Query: 459 ggggcatt 466
           ||||||||
Sbjct: 414 ggggcatt 407



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                      
Query: 534 ttcctcttcacaggtggctttgagctactagcttcctttttggaagatttctccttttc 592
           ||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||
Sbjct: 345 ttcctcttcacaggtggctttgaactactagcttcctttttggataatttctctttttc 287
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>dbj|AK066832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A09, full
            insert sequence
          Length = 2508

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 62/68 (91%)
 Strand = Plus / Minus

                                                                        
Query: 399  ttcttcaaattagctcgctcagcctttgagaagtacatgaatggtgctattgctcttttg 458
            ||||||| |||  ||||||||||| |||||||||||||||||||||  ||||||||||||
Sbjct: 1932 ttcttcatatttcctcgctcagccattgagaagtacatgaatggtgtcattgctcttttg 1873

                    
Query: 459  ggggcatt 466
            ||||||||
Sbjct: 1872 ggggcatt 1865



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 55/59 (93%)
 Strand = Plus / Minus

                                                                       
Query: 534  ttcctcttcacaggtggctttgagctactagcttcctttttggaagatttctccttttc 592
            ||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||
Sbjct: 1803 ttcctcttcacaggtggctttgaactactagcttcctttttggataatttctctttttc 1745
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                      
Query: 412     ctcgctcagcctttgagaagtacatgaatggtgctattgctcttttgggggcatt 466
               ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 4502324 ctcgctcagccattgagaagtacatgaatggtgtcattgctcttttgggggcatt 4502270



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                           
Query: 534     ttcctcttcacaggtggctttgagctactagcttcctttttgga 577
               ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 4502208 ttcctcttcacaggtggctttgaactactagcttcctttttgga 4502165



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 335     catcttttgccatttctctccaagcttctttgcaat 370
               ||||||||||||  |||| || ||||||||||||||
Sbjct: 4502698 catcttttgccacatctccccgagcttctttgcaat 4502663
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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510F03
          Length = 149699

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 52/55 (94%)
 Strand = Plus / Minus

                                                                    
Query: 412   ctcgctcagcctttgagaagtacatgaatggtgctattgctcttttgggggcatt 466
             ||||||||||| |||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 37011 ctcgctcagccattgagaagtacatgaatggtgtcattgctcttttgggggcatt 36957



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                         
Query: 534   ttcctcttcacaggtggctttgagctactagcttcctttttgga 577
             ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 36895 ttcctcttcacaggtggctttgaactactagcttcctttttgga 36852



 Score = 40.1 bits (20), Expect = 8.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 335   catcttttgccatttctctccaagcttctttgcaat 370
             ||||||||||||  |||| || ||||||||||||||
Sbjct: 37385 catcttttgccacatctccccgagcttctttgcaat 37350
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>emb|AJ244017.1|ZMA244017 Zea mays mRNA for SSRP1 protein
          Length = 2310

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 277  catagcgtttcttatccacttgggactgctcaaggtatggctgcttctcctcagctgaca 336
            |||| |||||||| || || |||| |||||  | ||| ||||| ||||| ||  ||||||
Sbjct: 1973 cataacgtttcttgtcgacctgggcctgctggatgtaaggctgtttctcttcgcctgaca 1914

                                           
Query: 337  tcttttgccatttctctccaagcttctttgc 367
            ||||||||||  |||| ||||||||||||||
Sbjct: 1913 tcttttgccacatctccccaagcttctttgc 1883



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 548  tggctttgagctactagcttcctttttggaagatttctccttttctccatcact 601
            ||||||||| || || |||||||| ||||| |||||||||||||| ||| ||||
Sbjct: 1708 tggctttgaactgcttgcttccttcttggatgatttctccttttcaccaccact 1655
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>gb|AY110129.1| Zea mays CL1186_1 mRNA sequence
          Length = 2305

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 75/91 (82%)
 Strand = Plus / Minus

                                                                        
Query: 277  catagcgtttcttatccacttgggactgctcaaggtatggctgcttctcctcagctgaca 336
            |||| |||||||| || || |||| |||||  | ||| ||||| ||||| ||  ||||||
Sbjct: 1973 cataacgtttcttgtcgacctgggcctgctggatgtaaggctgtttctcttcgcctgaca 1914

                                           
Query: 337  tcttttgccatttctctccaagcttctttgc 367
            ||||||||||  |||| ||||||||||||||
Sbjct: 1913 tcttttgccacatctccccaagcttctttgc 1883



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 548  tggctttgagctactagcttcctttttggaagatttctccttttctccatcact 601
            ||||||||| || || |||||||| ||||| |||||||||||||| ||| ||||
Sbjct: 1708 tggctttgaactgcttgcttccttcttggatgatttctccttttcaccaccact 1655
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>gb|AC182660.2| Populus trichocarpa clone Pop1-125N19, complete sequence
          Length = 99621

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 49    aaacctacacatatccattaact 71
             |||||||||||||||||||||||
Sbjct: 49633 aaacctacacatatccattaact 49655
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>emb|X97906.1|VFHMG V.faba mRNA for transcription factor containing HMG-box
          Length = 2270

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 320  cttctcctcagctgacatcttttgccatttctctccaag 358
            ||||||||| |||||||  |||| |||||||||||||||
Sbjct: 1867 cttctcctccgctgacaggtttttccatttctctccaag 1829
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>gb|AC130799.19| Medicago truncatula clone mth2-34b13, complete sequence
          Length = 133305

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 331   ctgacatcttttgccatttctctccaa 357
             |||||||||||| ||||||||||||||
Sbjct: 32296 ctgacatctttttccatttctctccaa 32322
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>dbj|AP006692.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT06K23, TM0391,
             complete sequence
          Length = 98505

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 332   tgacatcttttgccatttctctccaag 358
             ||||||||||| |||||||||||||||
Sbjct: 17423 tgacatctttttccatttctctccaag 17397
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>ref|XM_529289.1| PREDICTED: Pan troglodytes LOC450271 (LOC450271), mRNA
          Length = 949

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 347 tttctctccaagcttctttgca 368
           ||||||||||||||||||||||
Sbjct: 99  tttctctccaagcttctttgca 78
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>emb|AL513303.11| Human DNA sequence from clone RP11-464C19 on chromosome 10 Contains the
             5' end of the COPEB gene for core promoter element binding
             protein (GBF ZF9 Zf9 BCD1 CPBP KLF6), two novel genes and
             a CpG island, complete sequence
          Length = 187833

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 347   tttctctccaagcttctttgca 368
             ||||||||||||||||||||||
Sbjct: 76145 tttctctccaagcttctttgca 76124
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>gb|AC073366.4| Homo sapiens chromosome 10 clone RP11-140C5, complete sequence
          Length = 176046

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 348    ttctctccaagcttctttgcaa 369
              ||||||||||||||||||||||
Sbjct: 151390 ttctctccaagcttctttgcaa 151411
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>gb|AC010547.9| Homo sapiens chromosome 16 clone RP11-510M2, complete sequence
          Length = 183228

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 580    atttctccttttctccatcacttatg 605
              |||||||||||||||| |||||||||
Sbjct: 115344 atttctccttttctccttcacttatg 115369
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>gb|AC087775.2| Rattus norvegicus strain Brown Norway clone RP31-464J4, complete sequence
          Length = 185081

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 581    tttctccttttctccatcacttatg 605
              |||||||||||||| ||||||||||
Sbjct: 159164 tttctccttttctctatcacttatg 159188
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>gb|AC121771.3| Mus musculus BAC clone RP23-348H21 from chromosome 3, complete
            sequence
          Length = 190309

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 538  tcttcacaggtggctttgagc 558
            |||||||||||||||||||||
Sbjct: 4495 tcttcacaggtggctttgagc 4475
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>gb|AC122832.4| Mus musculus BAC clone RP23-179D3 from 12, complete sequence
          Length = 224056

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 525    ctctttggtttcctcttcaca 545
              |||||||||||||||||||||
Sbjct: 120142 ctctttggtttcctcttcaca 120122
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>gb|AC140916.17| Medicago truncatula clone mth2-12b2, complete sequence
          Length = 133358

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 443    tgctattgctcttttgggggc 463
              |||||||||||||||||||||
Sbjct: 109590 tgctattgctcttttgggggc 109570
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>gb|AC119088.4| Rattus norvegicus 4 BAC CH230-222H3 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 224687

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 581   tttctccttttctccatcacttatg 605
             |||||||||||||| ||||||||||
Sbjct: 41101 tttctccttttctctatcacttatg 41077
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>emb|AL731677.9| Mouse DNA sequence from clone RP23-41J17 on chromosome 11, complete
             sequence
          Length = 97297

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   tctcctcagctgacatctttt 342
             |||||||||||||||||||||
Sbjct: 54295 tctcctcagctgacatctttt 54315
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>gb|AC007437.16| Homo sapiens 12q22 BAC RPCI11-541G9 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 179854

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 589   tttctccatcacttatgctgg 609
             |||||||||||||||||||||
Sbjct: 92285 tttctccatcacttatgctgg 92265
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>gb|AC140344.3| Mus musculus BAC clone RP23-237M10 from chromosome 12, complete sequence
          Length = 205862

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 541    tcacaggtggctttgagctac 561
              |||||||||||||||||||||
Sbjct: 200507 tcacaggtggctttgagctac 200487
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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 581     tttctccttttctccatcacttatg 605
               |||||||||||||| ||||||||||
Sbjct: 1492336 tttctccttttctctatcacttatg 1492360
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>gb|AC154173.3| Mus musculus BAC clone RP23-3C4 from 3, complete sequence
          Length = 214016

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 538   tcttcacaggtggctttgagc 558
             |||||||||||||||||||||
Sbjct: 94087 tcttcacaggtggctttgagc 94107
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>emb|CT025738.5| Mouse DNA sequence from clone RP24-378G24 on chromosome 12, complete
              sequence
          Length = 182200

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 541    tcacaggtggctttgagctac 561
              |||||||||||||||||||||
Sbjct: 144257 tcacaggtggctttgagctac 144277
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>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
             map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    atccattaactgttctttgt 80
             ||||||||||||||||||||
Sbjct: 67687 atccattaactgttctttgt 67668
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>gb|AC158939.9| Mus musculus chromosome 5, clone RP23-204A8, complete sequence
          Length = 218847

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tctttgttaactcagaaacg 93
              ||||||||||||||||||||
Sbjct: 108418 tctttgttaactcagaaacg 108437
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 61       atccattaactgttctttgt 80
                ||||||||||||||||||||
Sbjct: 24832452 atccattaactgttctttgt 24832433
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>gb|AC009600.20| Homo sapiens 2 BAC RP11-436K12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 217304

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 259    aagcagcagtctcctctgca 278
              ||||||||||||||||||||
Sbjct: 130627 aagcagcagtctcctctgca 130608
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>emb|AJ783769.1| Sulfolobus tengchongensis spindle-shaped virus STSV1 complete genome
          Length = 75294

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   tctcctcagctgacatcttt 341
             ||||||||||||||||||||
Sbjct: 54002 tctcctcagctgacatcttt 54021
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>emb|CR769775.11| Human DNA sequence from clone RP11-449H15 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 169430

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 590   ttctccatcacttatgctgg 609
             ||||||||||||||||||||
Sbjct: 58828 ttctccatcacttatgctgg 58809
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>emb|AL513185.12| Human DNA sequence from clone RP11-167P22 on chromosome 10 Contains the
             5' end of the CBARA1 gene for calcium binding
             atopy-related autoantigen 1, an HMG17 pseudogene, a
             cytochrome c oxidase subunit VIIc (COX7C) pseudogene, a
             novel gene, a novel pseudogene (FLJ12684) and a CpG
             island, complete sequence
          Length = 163632

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 257   gtaagcagcagtctcctctg 276
             ||||||||||||||||||||
Sbjct: 75890 gtaagcagcagtctcctctg 75909
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>emb|AL391987.15| Human DNA sequence from clone RP11-374M1 on chromosome 9 Contains the
             FAM27C gene for family with sequence similarity 27, member
             C, three novel genes, five novel pseudogenes and six CpG
             islands, complete sequence
          Length = 202081

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 590   ttctccatcacttatgctgg 609
             ||||||||||||||||||||
Sbjct: 20819 ttctccatcacttatgctgg 20838
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>emb|AL355151.11| Human DNA sequence from clone RP11-288C24 on chromosome 9, complete
             sequence
          Length = 95128

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 590   ttctccatcacttatgctgg 609
             ||||||||||||||||||||
Sbjct: 49588 ttctccatcacttatgctgg 49607
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>emb|AL356127.8| Human DNA sequence from clone RP11-368P1 on chromosome 6, complete
             sequence
          Length = 139086

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 564   gcttcctttttggaagattt 583
             ||||||||||||||||||||
Sbjct: 28468 gcttcctttttggaagattt 28449
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>emb|AL158093.8| Human DNA sequence from clone RP5-959I16 on chromosome 20 Contains
             STSs, GSSs and a CpG island, complete sequence
          Length = 112674

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   ccaagttactacagccaaga 128
             ||||||||||||||||||||
Sbjct: 32070 ccaagttactacagccaaga 32051
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>gb|AY128421.1| Drosophila melanogaster GH14660 full insert cDNA
          Length = 4106

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 521  cacactctttggtttcctct 540
            ||||||||||||||||||||
Sbjct: 1659 cacactctttggtttcctct 1678
to top
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 128559

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     atccattaactgttctttgt 80
              ||||||||||||||||||||
Sbjct: 119403 atccattaactgttctttgt 119384
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>gb|AC099675.2| Homo sapiens chromosome 1 clone RP11-459D6, complete sequence
          Length = 162806

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    aacctacacatatccattaa 69
             ||||||||||||||||||||
Sbjct: 89669 aacctacacatatccattaa 89650
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>ref|XM_945461.1| PREDICTED: Homo sapiens hypothetical protein LOC649471 (LOC649471),
           mRNA
          Length = 965

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 aagcagcagtctcctctgca 278
           ||||||||||||||||||||
Sbjct: 473 aagcagcagtctcctctgca 454
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>ref|XM_934015.1| PREDICTED: Homo sapiens hypothetical protein LOC644093 (LOC644093),
           mRNA
          Length = 965

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 259 aagcagcagtctcctctgca 278
           ||||||||||||||||||||
Sbjct: 473 aagcagcagtctcctctgca 454
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>gb|AC008288.8|AC008288 Drosophila melanogaster, chromosome 2R, region 42E-42E, BAC clone
              BACR36G11, complete sequence
          Length = 174751

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 521    cacactctttggtttcctct 540
              ||||||||||||||||||||
Sbjct: 136894 cacactctttggtttcctct 136913
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 61       atccattaactgttctttgt 80
                ||||||||||||||||||||
Sbjct: 24923775 atccattaactgttctttgt 24923756
to top
>gb|AC009342.5|AC009342 Drosophila melanogaster, chromosome 2R, region 42E-43A, BAC clone
             BACR29G01, complete sequence
          Length = 165855

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   cacactctttggtttcctct 540
             ||||||||||||||||||||
Sbjct: 14003 cacactctttggtttcctct 13984
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>gb|AC138655.1| Homo sapiens BAC clone RP11-436K12 from 2, complete sequence
          Length = 139150

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   aagcagcagtctcctctgca 278
             ||||||||||||||||||||
Sbjct: 52474 aagcagcagtctcctctgca 52455
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>gb|AC156160.4| Monodelphis domestica, clone XX-23H4, complete sequence
          Length = 143400

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    tcccaagttactacagccaa 126
              ||||||||||||||||||||
Sbjct: 109118 tcccaagttactacagccaa 109137
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>gb|AE003790.2| Drosophila melanogaster chromosome 2R, section 7 of 73 of the complete
              sequence
          Length = 348873

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 521    cacactctttggtttcctct 540
              ||||||||||||||||||||
Sbjct: 259935 cacactctttggtttcctct 259916
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>dbj|AP002514.5| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3055E19, complete
             sequence
          Length = 201641

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 319   gcttctcctcagctgacatctttt 342
             |||||||||||||| |||||||||
Sbjct: 71132 gcttctcctcagctcacatctttt 71109
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>emb|AL935278.7| Mouse DNA sequence from clone RP23-84E1 on chromosome 2, complete
             sequence
          Length = 183353

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 570   tttttggaagatttctccttttct 593
             |||||||||||||| |||||||||
Sbjct: 23827 tttttggaagatttttccttttct 23804


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,273,295
Number of Sequences: 3902068
Number of extensions: 5273295
Number of successful extensions: 103466
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103211
Number of HSP's gapped (non-prelim): 254
length of query: 626
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 603
effective length of database: 17,143,297,704
effective search space: 10337408515512
effective search space used: 10337408515512
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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