>TRK2_YEAST (P28584) Low-affinity potassium transport protein|
          Length = 889

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -2

Query: 111 IQTFEFGIGVLMQVVXSPWXCMRHQYGSVV 22
           +  +  G  +L  V   PW C RH Y  ++
Sbjct: 466 LMVYYIGFNILAFVTIVPWACTRHHYSEII 495

>USH2A_MOUSE (Q2QI47) Usherin precursor (Usher syndrome type-2A protein homolog)|
           (Usher syndrome type IIa protein homolog)
          Length = 5193

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 20/67 (29%), Positives = 25/67 (37%)
 Frame = +2

Query: 44  RIQXHGEXTTCINTPMPNSNVWM*KSIKHXTPHTTTSNANVFRCEDTKYLYDNFQASVSD 223
           R Q HG   TC  T  P   +         +PH+ T      RC     LY++      D
Sbjct: 514 RCQCHGHAETCDRTRRPYRCLC--------SPHSFTEGPQCDRCSP---LYNDKPFRSGD 562

Query: 224 NTRAFEC 244
           N  AF C
Sbjct: 563 NVNAFNC 569

>POLG_PVYO (P22602) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3] (Fragment)
          Length = 856

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 248 GNTQMPVCCRTLKPGSCHISTWYLHI*RHL 159
           GN   P CC TL  GS   ST+Y    +HL
Sbjct: 568 GNYVYPCCCTTLDDGSAIESTFYPPTKKHL 597

>POLG_PVYN (P18247) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral gen
          Length = 3063

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 248 GNTQMPVCCRTLKPGSCHISTWYLHI*RHL 159
           GN   P CC TL  GS   ST+Y    +HL
Sbjct: 568 GNYVYPCCCTTLDDGSAIESTFYPPTKKHL 597

>POLG_PVYC (P22601) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3] (Fragment)
          Length = 856

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 248 GNTQMPVCCRTLKPGSCHISTWYLHI*RHL 159
           GN   P CC TL  GS   ST+Y    +HL
Sbjct: 568 GNYVYPCCCTTLDDGSAIESTFYPPTKKHL 597

>POLG_PVYHU (Q02963) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3061

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -3

Query: 248 GNTQMPVCCRTLKPGSCHISTWYLHI*RHL 159
           GN   P CC TL  GS   ST+Y    +HL
Sbjct: 568 GNYVYPCCCTTLDDGSAVESTFYPPTKKHL 597

>YNS5_CAEEL (Q22288) Hypothetical UPF0205 protein T07C4.5 precursor|
          Length = 130

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 54  TMVKXQLASTHRCQIQMSGCKRAS 125
           T +   L  TH C ++ +GCKR S
Sbjct: 76  TSISPYLIITHNCNVKKAGCKRVS 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,689,148
Number of Sequences: 219361
Number of extensions: 659150
Number of successful extensions: 1299
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1298
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)