ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8n01 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 136 bits (343), Expect = 2e-32 Identities = 66/66 (100%), Positives = 66/66 (100%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD Sbjct: 170 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 229 Query: 234 DADIGY 217 DADIGY Sbjct: 230 DADIGY 235
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 94.4 bits (233), Expect = 1e-19 Identities = 43/58 (74%), Positives = 50/58 (86%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 241 IAGWIGWVGRSYLIA+ EKKP +EIIIDV LA+ ++ RGF WPVAAYREL+NG+LV Sbjct: 170 IAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELV 227
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 92.8 bits (229), Expect = 3e-19 Identities = 41/58 (70%), Positives = 49/58 (84%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLV 241 IAGWIGWVGRSYLIA+ EKKP +EIIIDV LA +++ RGF WPVAAYRE +NG+L+ Sbjct: 171 IAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELI 228
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 77.4 bits (189), Expect = 1e-14 Identities = 35/64 (54%), Positives = 47/64 (73%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 I+GWIGWVGR YL AVS K P EIII+V LA +I+ G+IWP++A++E I+ DLV Sbjct: 117 ISGWIGWVGRKYLRAVSTTKNPTESEIIINVPLALKIMTTGYIWPISAWQEFISNDLVAL 176 Query: 234 DADI 223 D ++ Sbjct: 177 DEEV 180
>PSAF_SYNY3 (P29256) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 75.9 bits (185), Expect = 4e-14 Identities = 34/64 (53%), Positives = 47/64 (73%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAGWIGWVGRSYLI + K P M+E++I+V LA + + GF+WP+AA E +G LV+ Sbjct: 97 IAGWIGWVGRSYLIEIRESKNPEMQEVVINVPLAIKKMLGGFLWPLAAVGEYTSGKLVMK 156 Query: 234 DADI 223 D++I Sbjct: 157 DSEI 160
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 75.5 bits (184), Expect = 5e-14 Identities = 32/64 (50%), Positives = 45/64 (70%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 I GWIGWVGR YL++V+ KP +EII+DV LA + + GF WP+AA++E +G L+ Sbjct: 117 ITGWIGWVGRGYLLSVAKTSKPTEKEIILDVPLAVKFMSSGFAWPLAAWQEFSSGQLIAP 176 Query: 234 DADI 223 + DI Sbjct: 177 NDDI 180
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 73.9 bits (180), Expect = 1e-13 Identities = 35/64 (54%), Positives = 45/64 (70%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L Sbjct: 96 IAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAK 155 Query: 234 DADI 223 D +I Sbjct: 156 DNEI 159
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 73.9 bits (180), Expect = 1e-13 Identities = 35/64 (54%), Positives = 45/64 (70%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAGWIGWVGR+YLIAV + +EIIIDV LA + + GF WP+AA +EL +G+L Sbjct: 96 IAGWIGWVGRAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAK 155 Query: 234 DADI 223 D +I Sbjct: 156 DNEI 159
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 72.0 bits (175), Expect = 5e-13 Identities = 32/64 (50%), Positives = 44/64 (68%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAGWIGWVGR+Y+ S KP +EIIIDV +A I G+IWP AA++E +G+L+ Sbjct: 115 IAGWIGWVGRNYVQFASQTDKPTEKEIIIDVPVALSFISTGYIWPFAAFKEFTSGNLIAK 174 Query: 234 DADI 223 + +I Sbjct: 175 EDEI 178
>PSAF_ANAVT (P31091) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 71.6 bits (174), Expect = 7e-13 Identities = 32/64 (50%), Positives = 44/64 (68%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAGWIGWVGR+YL A+ + +EI +D+ LA II GF WP AA +EL++G+L Sbjct: 96 IAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGLALPIIATGFAWPAAAVKELLSGELTAK 155 Query: 234 DADI 223 D++I Sbjct: 156 DSEI 159
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 71.6 bits (174), Expect = 7e-13 Identities = 33/64 (51%), Positives = 44/64 (68%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAGWIGWVGRSYL A+ +K A +EI+IDV LA + GF WP+AA++E +G L+ Sbjct: 91 IAGWIGWVGRSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAK 150 Query: 234 DADI 223 +I Sbjct: 151 ADEI 154
>PSAF_ANASP (P58564) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 70.9 bits (172), Expect = 1e-12 Identities = 31/64 (48%), Positives = 44/64 (68%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAGWIGWVGR+YL A+ + +EI +D+ +A II GF WP AA +EL++G+L Sbjct: 96 IAGWIGWVGRAYLQAIKKDSDTEQKEIQLDLGIALPIIATGFAWPAAAVKELLSGELTAK 155 Query: 234 DADI 223 D++I Sbjct: 156 DSEI 159
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 68.6 bits (166), Expect = 6e-12 Identities = 34/64 (53%), Positives = 46/64 (71%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 +AG+IG+VGR YLIAV GE KP +EIIIDV LA ++ +G WP+AA +EL G L+ Sbjct: 159 VAGYIGYVGRQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEK 218 Query: 234 DADI 223 + +I Sbjct: 219 EENI 222
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 66.2 bits (160), Expect = 3e-11 Identities = 30/64 (46%), Positives = 43/64 (67%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAG+IGW GRSYL AV+ +EIIID+ +A + + +GF+WP+AA +E +G L Sbjct: 118 IAGFIGWSGRSYLQAVAASDNSTEKEIIIDIPVALQSVSKGFVWPLAALQEFSSGKLTAR 177 Query: 234 DADI 223 D +I Sbjct: 178 DEEI 181
>PSAF_MASLA (O31127) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 165 Score = 60.1 bits (144), Expect = 2e-09 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGE-KKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVV 238 IAGWIGWVGR+YL + + +EI I++ +A I+ GF WP AA +E ++G+L Sbjct: 96 IAGWIGWVGRAYLQTIKKQGSNVEQKEIQIELPIALPIMLSGFAWPAAAIKEFLSGELTA 155 Query: 237 DDADI 223 D +I Sbjct: 156 KDEEI 160
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 58.9 bits (141), Expect = 5e-09 Identities = 28/64 (43%), Positives = 37/64 (57%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAGWIGW G+ YL KP EIIID+ A + + GF WP+ A +E NG L+ Sbjct: 119 IAGWIGWAGKGYLQYSKTLTKPNENEIIIDLPRALKYMFSGFAWPILALKEFKNGSLLAS 178 Query: 234 DADI 223 + +I Sbjct: 179 NDEI 182
>PSAF_PROMA (Q9X7I4) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 183 Score = 56.2 bits (134), Expect = 3e-08 Identities = 30/64 (46%), Positives = 38/64 (59%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 +AG IGW GR YL A K PA EIIID LA + + +G WPV A ++ +GDL Sbjct: 114 VAGIIGWSGREYLRASKKTKNPAENEIIIDFALARQCLIKGAAWPVEANKQGRSGDLREK 173 Query: 234 DADI 223 D +I Sbjct: 174 DENI 177
>PSAF_GLOVI (Q7NH05) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 181 Score = 48.9 bits (115), Expect = 5e-06 Identities = 28/61 (45%), Positives = 35/61 (57%) Frame = -3 Query: 414 IAGWIGWVGRSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVD 235 IAG +GW GR YL E K EIIID+ A + + G IWPV A ELI+G + V Sbjct: 117 IAGALGWAGRLYL----AESKGPEDEIIIDLPKAIKCLLLGLIWPVQAIPELISGKIRVP 172 Query: 234 D 232 + Sbjct: 173 E 173
>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA| replicase) Length = 1045 Score = 30.8 bits (68), Expect = 1.3 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = -3 Query: 186 SRSQVRWAAEDEGLWCRSVWAWCRS**DHGEMEPLLYLRN 67 S +QV + + G W VW WC D+GE LYL+N Sbjct: 217 SDNQVDYRVDGGGRWQHKVWNWC----DYGE---FLYLKN 249
>MADCA_HUMAN (Q13477) Mucosal addressin cell adhesion molecule 1 precursor| (MAdCAM-1) (hMAdCAM-1) Length = 406 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 60 GFSFLNTREVPFLHDPISSYTKPTQIDTTSPHPP 161 G + + +P LH P T P DTTSP PP Sbjct: 212 GLELSHRQAIPVLHSP----TSPEPPDTTSPEPP 241
>YHBP_ECO57 (Q8XA94) UPF0306 protein yhbP| Length = 147 Score = 29.3 bits (64), Expect = 3.8 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 213 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 127 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOL6 (Q8FD95) UPF0306 protein yhbP| Length = 140 Score = 29.3 bits (64), Expect = 3.8 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 213 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 127 L A+ WLA + V W + EG LWC + + Sbjct: 4 LTAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_SHIFL (P67763) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 213 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 127 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>YHBP_ECOLI (P67762) UPF0306 protein yhbP| Length = 147 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%) Frame = -3 Query: 213 LAAMRAWLASRSQVRWAAEDEG-LWCRSVW 127 L A+ WLA + V W + EG LWC + + Sbjct: 4 LIAISRWLAKQHVVTWCVQQEGELWCANAF 33
>AGI_URTDI (P11218) Lectin/endochitinase precursor (EC 3.2.1.14) (Agglutinin)| (UDA) Length = 372 Score = 28.1 bits (61), Expect = 8.6 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 Query: 147 LWCRSVWAWCRS**DHGEMEP 85 LWC S+W WC G+ EP Sbjct: 38 LWCCSIWGWC------GDSEP 52
>PPZ1_YEAST (P26570) Serine/threonine-protein phosphatase PP-Z1 (EC 3.1.3.16)| Length = 691 Score = 28.1 bits (61), Expect = 8.6 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +2 Query: 119 HQAHTDRHHKPSSSAAH 169 H +HT+R+H PSSS +H Sbjct: 79 HSSHTNRYHFPSSSHSH 95
>U124_HUMAN (Q8IV20) UPF0124 protein| Length = 430 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/36 (30%), Positives = 20/36 (55%) Frame = -2 Query: 109 IGSWRNGTSLVFKKLNPILYNYCVLSSHVCILPCSN 2 + S +N + K LN + Y++ + +CI+ CSN Sbjct: 14 LNSQKNCHQTLLKTLNAVQYHHAAKAKFLCIMCCSN 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,058,694 Number of Sequences: 219361 Number of extensions: 959346 Number of successful extensions: 2777 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2590 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2772 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
