ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8n01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit... 793 0.0
2ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA 270 3e-69
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 270 3e-69
4gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 geno... 270 3e-69
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 270 3e-69
6dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 3e-69
7dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 3e-69
8dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 270 3e-69
9gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit prec... 270 3e-69
10gb|AY103687.1| Zea mays PCO106710 mRNA sequence 258 1e-65
11gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction cent... 50 0.006
12ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-li... 44 0.36
13emb|AL513210.32| Human DNA sequence from clone RP11-35J6 on chro... 44 0.36
14emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 44 0.36
15emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 44 0.36
16dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.36
17dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.36
18gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.4
19gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 42 1.4
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
21dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
22gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.4
23gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.4
24emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 42 1.4
25ref|XM_471550.1| Oryza sativa (japonica cultivar-group), predic... 40 5.6
26ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothet... 40 5.6
27gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's H... 40 5.6
28gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 5.6
29gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 5.6
30emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.6
31gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 5.6
32emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 40 5.6
33emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.6
34emb|BX640425.1| Bordetella parapertussis strain 12822, complete ... 40 5.6
35emb|BX640411.1| Bordetella pertussis strain Tohama I, complete g... 40 5.6
36emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 5.6
37emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
38gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
39gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, comp... 40 5.6
40gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 40 5.6
41gb|AE012083.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.6
42dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 5.6
43gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 5.6
44gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, comp... 40 5.6
45gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 5.6
46gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.6
47gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 5.6
48dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
49emb|BX814457.1|CNS0ADUS Arabidopsis thaliana Full-length cDNA Co... 40 5.6
50gb|AC026303.25| Homo sapiens 3 BAC RP11-581D23 (Roswell Park Can... 40 5.6
51dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.6
52emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo ... 40 5.6
53emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 5.6
54gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 5.6
55gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.6
56gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 5.6 
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA,
           complete cds
          Length = 990

 Score =  793 bits (400), Expect = 0.0
 Identities = 413/416 (99%), Gaps = 1/416 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttgaaca-tggtaaaatacacacgtgtgaagagagaacacaatagttatacaagatt 59
           |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 971 aatttgaacaatggtaaaatacacacatgtgaagagagaacacaatagttatacaagatt 912

                                                                       
Query: 60  gggttcagtttcttaaatacaagagaggttccatttctccatgatcctatcagctcctac 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911 gggttcagtttcttaaatacaagagaggttccatttctccatgatcctatcagctcctac 852

                                                                       
Query: 120 accaagcccacacagatcgacaccacaagccctcatcctccgctgcccatctgacttggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 accaagcccacacagatcgacaccacaagccctcatcctccgctgcccatctgacttggg 792

                                                                       
Query: 180 accgactagccaaccacgcacgcatggcagctagttagtagccgatgtcggcgtcgtcga 239
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 791 accgactagccaaccacgcacgcatggcagctacttagtagccgatgtcggcgtcgtcga 732

                                                                       
Query: 240 cgacgaggtcgccgttgatgagctcgcggtatgcggcgacgggccagatgaagcccctgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cgacgaggtcgccgttgatgagctcgcggtatgcggcgacgggccagatgaagcccctgg 672

                                                                       
Query: 300 ggatgatcctggcggcgagctcgacgtcgatgatgatctccctcatggcgggcttcttct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggatgatcctggcggcgagctcgacgtcgatgatgatctccctcatggcgggcttcttct 612

                                                                   
Query: 360 cgccgctgacggcgatgaggtagctgcgtccgacccagccgatccagccggcgatg 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 cgccgctgacggcgatgaggtagctgcgtccgacccagccgatccagccggcgatg 556
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>ref|NM_184976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score =  270 bits (136), Expect = 3e-69
 Identities = 184/200 (92%)
 Strand = Plus / Minus

                                                                       
Query: 216 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 275
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 778 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 719

                                                                       
Query: 276 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 335
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 718 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 659

                                                                       
Query: 336 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 395
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 658 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 599

                               
Query: 396 agccgatccagccggcgatg 415
           ||||||||||||||||||||
Sbjct: 598 agccgatccagccggcgatg 579



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 68  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 122
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 921 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 867
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  270 bits (136), Expect = 3e-69
 Identities = 184/200 (92%)
 Strand = Plus / Plus

                                                                            
Query: 216      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 275
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 31969474 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 31969533

                                                                            
Query: 276      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 335
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 31969534 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 31969593

                                                                            
Query: 336      tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 395
                ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 31969594 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 31969653

                                    
Query: 396      agccgatccagccggcgatg 415
                ||||||||||||||||||||
Sbjct: 31969654 agccgatccagccggcgatg 31969673



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 68       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 122
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 31969219 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 31969273
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>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score =  270 bits (136), Expect = 3e-69
 Identities = 184/200 (92%)
 Strand = Plus / Plus

                                                                         
Query: 216   agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 275
             ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 61426 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 61485

                                                                         
Query: 276   cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 335
             |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 61486 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 61545

                                                                         
Query: 336   tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 395
             ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 61546 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 61605

                                 
Query: 396   agccgatccagccggcgatg 415
             ||||||||||||||||||||
Sbjct: 61606 agccgatccagccggcgatg 61625



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 68    tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 122
             |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 61171 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 61225
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  270 bits (136), Expect = 3e-69
 Identities = 184/200 (92%)
 Strand = Plus / Plus

                                                                            
Query: 216      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 275
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 32059986 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 32060045

                                                                            
Query: 276      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 335
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 32060046 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 32060105

                                                                            
Query: 336      tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 395
                ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 32060106 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 32060165

                                    
Query: 396      agccgatccagccggcgatg 415
                ||||||||||||||||||||
Sbjct: 32060166 agccgatccagccggcgatg 32060185



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 68       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 122
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 32059731 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 32059785
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>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full
           insert sequence
          Length = 967

 Score =  270 bits (136), Expect = 3e-69
 Identities = 184/200 (92%)
 Strand = Plus / Minus

                                                                       
Query: 216 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 275
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 742 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 683

                                                                       
Query: 276 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 335
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 682 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 623

                                                                       
Query: 336 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 395
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 622 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 563

                               
Query: 396 agccgatccagccggcgatg 415
           ||||||||||||||||||||
Sbjct: 562 agccgatccagccggcgatg 543



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 68  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 122
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 890 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 836
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>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full
           insert sequence
          Length = 997

 Score =  270 bits (136), Expect = 3e-69
 Identities = 184/200 (92%)
 Strand = Plus / Minus

                                                                       
Query: 216 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 275
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 777 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 718

                                                                       
Query: 276 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 335
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 717 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 658

                                                                       
Query: 336 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 395
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 657 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 598

                               
Query: 396 agccgatccagccggcgatg 415
           ||||||||||||||||||||
Sbjct: 597 agccgatccagccggcgatg 578



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 68  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 122
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 920 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 866
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>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full
           insert sequence
          Length = 990

 Score =  270 bits (136), Expect = 3e-69
 Identities = 184/200 (92%)
 Strand = Plus / Minus

                                                                       
Query: 216 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 275
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 765 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 706

                                                                       
Query: 276 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 335
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 705 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 646

                                                                       
Query: 336 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 395
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 645 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 586

                               
Query: 396 agccgatccagccggcgatg 415
           ||||||||||||||||||||
Sbjct: 585 agccgatccagccggcgatg 566



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 68  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 122
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 913 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 859
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>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA,
           complete cds
          Length = 996

 Score =  270 bits (136), Expect = 3e-69
 Identities = 184/200 (92%)
 Strand = Plus / Minus

                                                                       
Query: 216 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 275
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 758 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 699

                                                                       
Query: 276 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtcgatgatga 335
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||||||||||
Sbjct: 698 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtcgatgatga 639

                                                                       
Query: 336 tctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctgcgtccgaccc 395
           ||||||||||||| ||||||||||||||||||| ||||||||||||||| |  |||||||
Sbjct: 638 tctccctcatggccggcttcttctcgccgctgatggcgatgaggtagctcctgccgaccc 579

                               
Query: 396 agccgatccagccggcgatg 415
           ||||||||||||||||||||
Sbjct: 578 agccgatccagccggcgatg 559



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 68  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 122
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 901 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 847
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>gb|AY103687.1| Zea mays PCO106710 mRNA sequence
          Length = 1242

 Score =  258 bits (130), Expect = 1e-65
 Identities = 191/210 (90%), Gaps = 1/210 (0%)
 Strand = Plus / Minus

                                                                       
Query: 206 gcagctagttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcg 265
           ||||||||| |||||||||||||   |||||||||||||||||| |||||||||||||||
Sbjct: 802 gcagctagt-agtagccgatgtccttgtcgtcgacgacgaggtctccgttgatgagctcg 744

                                                                       
Query: 266 cggtatgcggcgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacg 325
           ||||| || ||||||||||||||||| |||||||||| ||  | || |||||||||||||
Sbjct: 743 cggtaggccgcgacgggccagatgaaccccctggggaggaggcgggtggcgagctcgacg 684

                                                                       
Query: 326 tcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctg 385
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| 
Sbjct: 683 tcgatgatgatctccctcatggcgggcttcttctcgccgctgatggcgatgaggtagctc 624

                                         
Query: 386 cgtccgacccagccgatccagccggcgatg 415
           |  |||||||| |||||||| |||||||||
Sbjct: 623 ctgccgacccacccgatccacccggcgatg 594
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>gb|AF139468.2|AF139468 Vigna radiata photosystem I reaction center subunit III (CipPsaF)
           mRNA, complete cds; nuclear gene for chloroplast product
          Length = 885

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 76/93 (81%)
 Strand = Plus / Minus

                                                                       
Query: 323 acgtcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtag 382
           |||||||||||||||||| |||| |  || || |||||  | |||| ||| || ||||||
Sbjct: 651 acgtcgatgatgatctccttcatcgtcggttttttctcatccctgatggcaataaggtag 592

                                            
Query: 383 ctgcgtccgacccagccgatccagccggcgatg 415
           || || || ||||| |||||||| |||||||||
Sbjct: 591 ctccgacccacccacccgatccacccggcgatg 559
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>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein
           (OSJNBb0015I11.17), mRNA
          Length = 1110

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 221 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 254
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 386 ccgatgtcggcgtcggcgacgacaaggccgccgt 353
to top
>emb|AL513210.32| Human DNA sequence from clone RP11-35J6 on chromosome 6 Contains six
             CpG islands, complete sequence
          Length = 157572

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 9     catggtaaaatacacacgtgtgaagagaga 38
             ||||||| ||| ||||||||||||||||||
Sbjct: 82335 catggtacaatccacacgtgtgaagagaga 82306
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>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 220   gccgatgtcggcgtcgtcgacgacgaggtcgccg 253
             ||||||||| ||| ||||||||||||| ||||||
Sbjct: 38032 gccgatgtccgcgccgtcgacgacgagctcgccg 38065
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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 220    gccgatgtcggcgtcgtcgacgacgaggtcgccg 253
              ||||||||| ||| ||||||||||||| ||||||
Sbjct: 127590 gccgatgtccgcgccgtcgacgacgagctcgccg 127557
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 226     gtcggcgtcgtcgacgacgagg 247
               ||||||||||||||||||||||
Sbjct: 1139192 gtcggcgtcgtcgacgacgagg 1139213
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>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full
           insert sequence
          Length = 1488

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 221 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 254
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 62  ccgatgtcggcgtcggcgacgacaaggccgccgt 29
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 228     cggcgtcgtcgacgacgaggt 248
               |||||||||||||||||||||
Sbjct: 1949449 cggcgtcgtcgacgacgaggt 1949429
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 222    cgatgtcggcgtcgtcgacgacgaggtcgccgt 254
              |||||||||||||| ||||||| ||| ||||||
Sbjct: 107077 cgatgtcggcgtcggcgacgacaaggccgccgt 107045
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 220      gccgatgtcggcgtcgtcgacgacg 244
                |||||||||| ||||||||||||||
Sbjct: 18403096 gccgatgtcgtcgtcgtcgacgacg 18403072



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 228      cggcgtcgtcgacgacgagg 247
                ||||||||||||||||||||
Sbjct: 12249186 cggcgtcgtcgacgacgagg 12249167
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 222      cgatgtcggcgtcgtcgacgacgaggtcgccgt 254
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20705625 cgatgtcggcgtcggcgacgacaaggccgccgt 20705593



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 227      tcggcgtcgtcgacgacgag 246
                ||||||||||||||||||||
Sbjct: 21068348 tcggcgtcgtcgacgacgag 21068367
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 235     gtcgacgacgaggtcgccgttgatg 259
               |||||||||||||||||||| ||||
Sbjct: 1766710 gtcgacgacgaggtcgccgtcgatg 1766734
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 222      cgatgtcggcgtcgtcgacgacgaggtcgccgt 254
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20716897 cgatgtcggcgtcggcgacgacaaggccgccgt 20716865



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 227      tcggcgtcgtcgacgacgag 246
                ||||||||||||||||||||
Sbjct: 21079612 tcggcgtcgtcgacgacgag 21079631
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>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
              complete sequence
          Length = 133413

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 220    gccgatgtcggcgtcgtcgacgacg 244
              |||||||||| ||||||||||||||
Sbjct: 105019 gccgatgtcgtcgtcgtcgacgacg 104995
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>ref|XM_471550.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 cggcgtcgtcgacgacgagg 247
           ||||||||||||||||||||
Sbjct: 214 cggcgtcgtcgacgacgagg 195
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>ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015J15.29), mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 227 tcggcgtcgtcgacgacgag 246
           ||||||||||||||||||||
Sbjct: 85  tcggcgtcgtcgacgacgag 66
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>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230137

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 70    tcttaaatacaagagaggtt 89
             ||||||||||||||||||||
Sbjct: 82654 tcttaaatacaagagaggtt 82673
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 352     cttcttctcgccgctgacgg 371
               ||||||||||||||||||||
Sbjct: 3593435 cttcttctcgccgctgacgg 3593454
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 358     ctcgccgctgacggcgatga 377
               ||||||||||||||||||||
Sbjct: 1323852 ctcgccgctgacggcgatga 1323871
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 389     ccgacccagccgatccagccggcg 412
               |||| |||||||||||||||||||
Sbjct: 5065965 ccgaaccagccgatccagccggcg 5065988
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 225     tgtcggcgtcgtcgacgacg 244
               ||||||||||||||||||||
Sbjct: 1625246 tgtcggcgtcgtcgacgacg 1625227
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>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
              sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 92     atttctccatgatcctatcagctcctac 119
              ||||||||||||||| |||| |||||||
Sbjct: 156375 atttctccatgatccaatcacctcctac 156348
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>emb|BX640439.1| Bordetella bronchiseptica strain RB50, complete genome; segment 3/16
          Length = 346362

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    tcttctcgccgctgacggcgatga 377
              |||||||||||||||||| |||||
Sbjct: 190124 tcttctcgccgctgacggtgatga 190147
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>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14
          Length = 348257

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    tcttctcgccgctgacggcgatga 377
              |||||||||||||||||| |||||
Sbjct: 103960 tcttctcgccgctgacggtgatga 103983
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>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12
          Length = 346359

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 354    tcttctcgccgctgacggcgatga 377
              |||||||||||||||||| |||||
Sbjct: 179689 tcttctcgccgctgacggtgatga 179712
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 228    cggcgtcgtcgacgacgagg 247
              ||||||||||||||||||||
Sbjct: 228093 cggcgtcgtcgacgacgagg 228112
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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
             complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   cggcgtcgtcgacgacgagg 247
             ||||||||||||||||||||
Sbjct: 74067 cggcgtcgtcgacgacgagg 74048
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 226    gtcggcgtcgtcgacgacgaggtcgccg 253
              |||| ||||||||||||||| |||||||
Sbjct: 102007 gtcgtcgtcgtcgacgacgacgtcgccg 102034
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>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence
          Length = 150750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    caagattgggttcagtttct 72
             ||||||||||||||||||||
Sbjct: 10979 caagattgggttcagtttct 10998
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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    ggttcagtttcttaaataca 80
             ||||||||||||||||||||
Sbjct: 17437 ggttcagtttcttaaataca 17456
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>gb|AE012083.1| Xanthomonas axonopodis pv. citri str. 306,  section 461 of 469 of the
            complete genome
          Length = 10370

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 389  ccgacccagccgatccagccggcg 412
            |||| |||||||||||||||||||
Sbjct: 1205 ccgaaccagccgatccagccggcg 1228
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 392    acccagccgatccagccggcgatg 415
              |||||||| |||||||||||||||
Sbjct: 346836 acccagccaatccagccggcgatg 346813
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
              sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 227    tcggcgtcgtcgacgacgag 246
              ||||||||||||||||||||
Sbjct: 137358 tcggcgtcgtcgacgacgag 137339
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>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence
          Length = 118755

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    caagattgggttcagtttct 72
             ||||||||||||||||||||
Sbjct: 14523 caagattgggttcagtttct 14504
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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 309     tggcggcgagctcgacgtcg 328
               ||||||||||||||||||||
Sbjct: 1823593 tggcggcgagctcgacgtcg 1823612
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 226     gtcggcgtcgtcgacgacga 245
               ||||||||||||||||||||
Sbjct: 3776403 gtcggcgtcgtcgacgacga 3776422
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    ccagccgatccagccggcga 413
              ||||||||||||||||||||
Sbjct: 655758 ccagccgatccagccggcga 655777
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 226     gtcggcgtcgtcgacgacgaggtcgccg 253
               |||| ||||||||||||||| |||||||
Sbjct: 4734002 gtcgtcgtcgtcgacgacgacgtcgccg 4734029
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>emb|BX814457.1|CNS0ADUS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB75ZA08 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 411

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                       
Query: 326 tcgatgatgatctccctcatggcgggcttcttctcgccgctgacggcgatgaggtagctg 385
           ||||||||||||||  |||| ||||| |||||||| || || |  || |||| |||||| 
Sbjct: 212 tcgatgatgatctctttcatcgcgggtttcttctcaccactaatagctatgaagtagctt 153

                               
Query: 386 cgtccgacccagccgatcca 405
           | ||| ||||| ||||||||
Sbjct: 152 cttccaacccacccgatcca 133
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>gb|AC026303.25| Homo sapiens 3 BAC RP11-581D23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 35018

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aatttgaacatggtaaaata 20
             ||||||||||||||||||||
Sbjct: 31230 aatttgaacatggtaaaata 31249
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 393     cccagccgatccagccggcg 412
               ||||||||||||||||||||
Sbjct: 3034808 cccagccgatccagccggcg 3034827
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>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human)
          Length = 204955

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     caagattgggttcagtttct 72
              ||||||||||||||||||||
Sbjct: 141244 caagattgggttcagtttct 141225
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 240     cgacgaggtcgccgttgatgagct 263
               ||||||||||| ||||||||||||
Sbjct: 1147951 cgacgaggtcgtcgttgatgagct 1147974
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     gagaggttccatttctccat 101
              ||||||||||||||||||||
Sbjct: 418732 gagaggttccatttctccat 418713
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
            complete sequence
          Length = 187956

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 226  gtcggcgtcgtcgacgacgaggtcgccg 253
            |||| ||||||||||||||| |||||||
Sbjct: 6410 gtcgtcgtcgtcgacgacgacgtcgccg 6437
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 392     acccagccgatccagccggcgatg 415
               |||||||| |||||||||||||||
Sbjct: 1273968 acccagccaatccagccggcgatg 1273991


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,069,917
Number of Sequences: 3902068
Number of extensions: 3069917
Number of successful extensions: 64717
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 63256
Number of HSP's gapped (non-prelim): 1462
length of query: 416
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 394
effective length of database: 17,147,199,772
effective search space: 6755996710168
effective search space used: 6755996710168
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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