ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1f05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 7e-04
2dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic D... 54 7e-04
3dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic D... 54 7e-04
4dbj|AK067390.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 7e-04
5dbj|AK060468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 7e-04
6emb|AL117325.3|HSDA79C13 Human DNA sequence from clone RP6-79C13... 44 0.63
7dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 44 0.63
8gb|AC160995.4| Mus musculus BAC clone RP23-96D5 from chromosome ... 42 2.5
9emb|CR376731.13| Zebrafish DNA sequence from clone DKEY-117K10 i... 42 2.5
10gb|AF448140.1| Danio rerio putative cellular retinol-binding pro... 42 2.5
11gb|AF363957.1| Danio rerio cellular retinol-binding protein type... 42 2.5
12gb|BC062286.1| Danio rerio retinol binding protein 2a, cellular,... 42 2.5
13gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence 42 2.5
14gb|AC005341.13| Homo sapiens chromosome , clone RP11-146P2, comp... 42 2.5
15gb|AC011626.8| Homo sapiens chromosome 8, clone RP11-369K17, com... 42 2.5
16ref|XM_691341.1| PREDICTED: Danio rerio similar to putative cell... 42 2.5
17emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 i... 42 2.5
18gb|AC154482.2| Mus musculus BAC clone RP23-198P13 from chromosom... 42 2.5
19emb|BX000987.6| Zebrafish DNA sequence from clone CH211-130P10 i... 42 2.5
20emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in ... 42 2.5
21ref|NM_153004.1| Danio rerio retinol binding protein 2a, cellula... 42 2.5
22gb|AY702706.1| Homo sapiens cytochrome P450, family 2, subfamily... 40 9.8
23gb|AF399919.3| Escherichia coli 0113:H21 large virulence plasmid... 40 9.8
24gb|AC113957.8| Mus musculus chromosome 15, clone RP23-452M1, com... 40 9.8
25gb|CP000114.1| Streptococcus agalactiae A909, complete genome 40 9.8
26gb|AY258503.2| Escherichia coli strain EH41 plasmid pO113, compl... 40 9.8
27emb|AL359672.19| Human DNA sequence from clone RP11-208C17 on ch... 40 9.8
28emb|AL357520.12| Human DNA sequence from clone RP11-288D15 on ch... 40 9.8
29emb|AL157906.8| Human DNA sequence from clone RP5-896C23 on chro... 40 9.8
30gb|AC158151.4| Mus musculus chromosome 1, clone RP24-315B17, com... 40 9.8
31gb|AE014235.1| Streptococcus agalactiae 2603V/R section 45 of 10... 40 9.8
32emb|BX026159.1|CNS08SCJ Single read from an extremity of a full-... 40 9.8
33emb|BX014041.1|CNS08IZX Single read from an extremity of a full-... 40 9.8
34emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet... 40 9.8
35emb|AJ301650.1|CCO301650 Coturnix coturnix japonica mRNA for thy... 40 9.8
36emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chro... 40 9.8
37gb|AC115903.12| Mus musculus chromosome 1, clone RP24-472L18, co... 40 9.8
38gb|AC110741.5| Homo sapiens chromosome 8, clone RP11-157E21, com... 40 9.8
39gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete... 40 9.8
40gb|AC007541.9| Homo sapiens 12q24.1 BAC RPCI11-412D9 (Roswell Pa... 40 9.8
41gb|AC100822.2| Homo sapiens chromosome 8, clone RP11-654O1, comp... 40 9.8
42gb|AC025898.10| Homo sapiens chromosome 17, clone RP11-421O15, c... 40 9.8
43gb|AY914797.1| Sulfophobococcus zilligii DNA polymerase gene, co... 40 9.8
44emb|CR405924.1| Gallus gallus finished cDNA, clone ChEST65l3 40 9.8
45gb|AC123660.8| Mus musculus chromosome 3, clone RP23-196E24, com... 40 9.8
46emb|BX930819.2| Gallus gallus finished cDNA, clone ChEST965i5 40 9.8
47emb|BX930688.2| Gallus gallus finished cDNA, clone ChEST972a21 40 9.8
48emb|CR353354.1| Gallus gallus finished cDNA, clone ChEST281k10 40 9.8
49gb|AC016770.10| Homo sapiens BAC clone RP11-564H1 from 2, comple... 40 9.8
50gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosom... 40 9.8
51emb|BX934524.1| Gallus gallus finished cDNA, clone ChEST608a1 40 9.8
52emb|BX934427.1| Gallus gallus finished cDNA, clone ChEST971k17 40 9.8
53emb|BX933436.1| Gallus gallus finished cDNA, clone ChEST44n18 40 9.8
54emb|BX933066.1| Gallus gallus finished cDNA, clone ChEST911g23 40 9.8
55emb|BX930710.1| Gallus gallus finished cDNA, clone ChEST962i11 40 9.8
56gb|AC112666.9| Mus musculus chromosome 3, clone RP24-119D5, comp... 40 9.8
57gb|AY303349.1| Enterobacteria phage RB69, complete genome 40 9.8
58emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in ... 40 9.8
59emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, compl... 40 9.8
60gb|AC140282.3| Mus musculus BAC clone RP24-501L1 from 1, complet... 40 9.8
61gb|AC101841.5| Mus musculus chromosome 1, clone RP23-251G19, com... 40 9.8
62emb|AL929007.6| Zebrafish DNA sequence from clone CH211-235E9 in... 40 9.8
63emb|AL929054.5| Mouse DNA sequence from clone RP23-454A14 on chr... 40 9.8
64dbj|AP005019.1| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.8 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                           
Query: 356     atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 415
               ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 8809716 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 8809775

                                  
Query: 416     gacttcggcttttcagtca 434
               ||||| || ||||||||||
Sbjct: 8809776 gactttggattttcagtca 8809794
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>dbj|AP004801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0613F08
          Length = 142937

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                         
Query: 356   atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 415
             ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 14734 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 14793

                                
Query: 416   gacttcggcttttcagtca 434
             ||||| || ||||||||||
Sbjct: 14794 gactttggattttcagtca 14812
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>dbj|AP006844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0052K15
          Length = 156250

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                          
Query: 356    atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 415
              ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 108795 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 108854

                                 
Query: 416    gacttcggcttttcagtca 434
              ||||| || ||||||||||
Sbjct: 108855 gactttggattttcagtca 108873
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>dbj|AK067390.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013103F03, full
            insert sequence
          Length = 2646

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                        
Query: 356  atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 415
            ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 2196 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 2137

                               
Query: 416  gacttcggcttttcagtca 434
            ||||| || ||||||||||
Sbjct: 2136 gactttggattttcagtca 2118
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>dbj|AK060468.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-D08, full
           insert sequence
          Length = 932

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 66/79 (83%)
 Strand = Plus / Minus

                                                                       
Query: 356 atcttttcttagctcgcaacctgaacggcctcgacttccccgtcgctgtaatcagcccag 415
           ||||||||| |||| ||||||| ||| |||||  |||| || || ||||| || ||||||
Sbjct: 418 atcttttctcagcttgcaacctcaacagcctcagcttctccatcactgtagtctgcccag 359

                              
Query: 416 gacttcggcttttcagtca 434
           ||||| || ||||||||||
Sbjct: 358 gactttggattttcagtca 340
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>emb|AL117325.3|HSDA79C13 Human DNA sequence from clone RP6-79C13 on chromosome Xq21.1-21.32
            Contains the 5' end of the gene for premature ovarian
            failure 1B (POF1B), complete sequence
          Length = 83673

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 155  ccagtttatggataaaggaaat 176
            ||||||||||||||||||||||
Sbjct: 3996 ccagtttatggataaaggaaat 3975
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 161     tatggataaaggaaataaaaat 182
               ||||||||||||||||||||||
Sbjct: 1361560 tatggataaaggaaataaaaat 1361539
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>gb|AC160995.4| Mus musculus BAC clone RP23-96D5 from chromosome 13, complete
            sequence
          Length = 235237

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 110  aattcagaagaaataactaca 130
            |||||||||||||||||||||
Sbjct: 2555 aattcagaagaaataactaca 2535
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>emb|CR376731.13| Zebrafish DNA sequence from clone DKEY-117K10 in linkage group 8,
             complete sequence
          Length = 130762

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 102   tttatcaaaattcagaagaaa 122
             |||||||||||||||||||||
Sbjct: 42956 tttatcaaaattcagaagaaa 42936
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>gb|AF448140.1| Danio rerio putative cellular retinol-binding protein mRNA,
           complete cds
          Length = 574

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 509 tcagcaccttcagaaactatg 529
           |||||||||||||||||||||
Sbjct: 219 tcagcaccttcagaaactatg 239
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>gb|AF363957.1| Danio rerio cellular retinol-binding protein type II mRNA, complete
           cds
          Length = 527

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 509 tcagcaccttcagaaactatg 529
           |||||||||||||||||||||
Sbjct: 188 tcagcaccttcagaaactatg 208
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>gb|BC062286.1| Danio rerio retinol binding protein 2a, cellular, mRNA (cDNA clone
           MGC:77921 IMAGE:7000527), complete cds
          Length = 551

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 509 tcagcaccttcagaaactatg 529
           |||||||||||||||||||||
Sbjct: 188 tcagcaccttcagaaactatg 208
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>gb|AC139345.8| Papio anubis clone rp41-256p17, complete sequence
          Length = 179810

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 113    tcagaagaaataactacagag 133
              |||||||||||||||||||||
Sbjct: 124987 tcagaagaaataactacagag 124967
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>gb|AC005341.13| Homo sapiens chromosome , clone RP11-146P2, complete sequence
          Length = 161449

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 161   tatggataaaggaaataaaaa 181
             |||||||||||||||||||||
Sbjct: 98150 tatggataaaggaaataaaaa 98170
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>gb|AC011626.8| Homo sapiens chromosome 8, clone RP11-369K17, complete sequence
          Length = 184547

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 173    aaataaaaatgccaagcaaaa 193
              |||||||||||||||||||||
Sbjct: 106805 aaataaaaatgccaagcaaaa 106825
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>ref|XM_691341.1| PREDICTED: Danio rerio similar to putative cellular retinol-binding
           protein (LOC568032), mRNA
          Length = 657

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 509 tcagcaccttcagaaactatg 529
           |||||||||||||||||||||
Sbjct: 272 tcagcaccttcagaaactatg 292
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>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15,
              complete sequence
          Length = 205794

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 509    tcagcaccttcagaaactatg 529
              |||||||||||||||||||||
Sbjct: 143184 tcagcaccttcagaaactatg 143164
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>gb|AC154482.2| Mus musculus BAC clone RP23-198P13 from chromosome 13, complete
             sequence
          Length = 214193

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 110   aattcagaagaaataactaca 130
             |||||||||||||||||||||
Sbjct: 86116 aattcagaagaaataactaca 86136
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>emb|BX000987.6| Zebrafish DNA sequence from clone CH211-130P10 in linkage group 15,
              complete sequence
          Length = 152072

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 509    tcagcaccttcagaaactatg 529
              |||||||||||||||||||||
Sbjct: 137037 tcagcaccttcagaaactatg 137057
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>emb|BX005217.5| Zebrafish DNA sequence from clone CH211-87L3 in linkage group 15,
              complete sequence
          Length = 154452

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 509    tcagcaccttcagaaactatg 529
              |||||||||||||||||||||
Sbjct: 117030 tcagcaccttcagaaactatg 117050
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>ref|NM_153004.1| Danio rerio retinol binding protein 2a, cellular (rbp2a), mRNA
          Length = 574

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 509 tcagcaccttcagaaactatg 529
           |||||||||||||||||||||
Sbjct: 219 tcagcaccttcagaaactatg 239
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>gb|AY702706.1| Homo sapiens cytochrome P450, family 2, subfamily C, polypeptide 9
            (CYP2C9) gene, complete cds
          Length = 60723

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 156  cagtttatggataaaggaaataaa 179
            ||||||||||||||| ||||||||
Sbjct: 2303 cagtttatggataaatgaaataaa 2326
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>gb|AF399919.3| Escherichia coli 0113:H21 large virulence plasmid pO113 fimbrial
             biosynthesis operon, complete sequence
          Length = 36851

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 661   agtttctgaaacttgcgggg 680
             ||||||||||||||||||||
Sbjct: 27975 agtttctgaaacttgcgggg 27994
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>gb|AC113957.8| Mus musculus chromosome 15, clone RP23-452M1, complete sequence
          Length = 168824

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    ttcactgtcctcacattcca 566
              ||||||||||||||||||||
Sbjct: 130104 ttcactgtcctcacattcca 130123
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     tttatcaaaattcagaagaa 121
               ||||||||||||||||||||
Sbjct: 1022541 tttatcaaaattcagaagaa 1022560
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>gb|AY258503.2| Escherichia coli strain EH41 plasmid pO113, complete sequence
          Length = 165548

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 661   agtttctgaaacttgcgggg 680
             ||||||||||||||||||||
Sbjct: 10603 agtttctgaaacttgcgggg 10622
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>emb|AL359672.19| Human DNA sequence from clone RP11-208C17 on chromosome 10 Contains
            the CYP2C9 gene for cytochrome P450 family 2 subfamily C
            polypeptide 9, a mitochondrial NADH dehydrogenase 4
            (MTND4) pseudogene, a pseudogene similar to part of
            cytochrome P450 family 2 subfamily C, a novel pseudogene
            and the CYP2C8 gene for cytochrome P450 family 2
            subfamily C polypeptide 8, complete sequence
          Length = 143181

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 156  cagtttatggataaaggaaataaa 179
            ||||||||||||||| ||||||||
Sbjct: 2372 cagtttatggataaatgaaataaa 2395
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>emb|AL357520.12| Human DNA sequence from clone RP11-288D15 on chromosome 10 Contains a
             pseudogene similar to part of glycogen synthase kinase 3
             and a ubiquitin-conjugating enzyme pseudogene, complete
             sequence
          Length = 178942

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 104   tatcaaaattcagaagaaataact 127
             ||||||||| ||||||||||||||
Sbjct: 70188 tatcaaaatacagaagaaataact 70211
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>emb|AL157906.8| Human DNA sequence from clone RP5-896C23 on chromosome 1p22.3-31.2
             Contains GSSs and STSs, complete sequence
          Length = 115705

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   gataaaggaaataaaaatgc 184
             ||||||||||||||||||||
Sbjct: 91187 gataaaggaaataaaaatgc 91206
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>gb|AC158151.4| Mus musculus chromosome 1, clone RP24-315B17, complete sequence
          Length = 184935

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 447   cttgagcatcctttggggttgaag 470
             ||||||| ||||||||||||||||
Sbjct: 46303 cttgagcttcctttggggttgaag 46326
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>gb|AE014235.1| Streptococcus agalactiae 2603V/R section 45 of 100 of the complete
             genome
          Length = 20172

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tttatcaaaattcagaagaa 121
             ||||||||||||||||||||
Sbjct: 14139 tttatcaaaattcagaagaa 14158
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>emb|BX026159.1|CNS08SCJ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA4BD03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 150

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 502 gtcaacttcagcaccttcag 521
           ||||||||||||||||||||
Sbjct: 12  gtcaacttcagcaccttcag 31
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>emb|BX014041.1|CNS08IZX Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA21AD01 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 745

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 502 gtcaacttcagcaccttcag 521
           ||||||||||||||||||||
Sbjct: 212 gtcaacttcagcaccttcag 231
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>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6
          Length = 233050

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   tttatcaaaattcagaagaa 121
             ||||||||||||||||||||
Sbjct: 35994 tttatcaaaattcagaagaa 36013
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>emb|AJ301650.1|CCO301650 Coturnix coturnix japonica mRNA for thymosin beta (ORF1)
          Length = 669

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 132 tgttcttctcctccgtgttg 113
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>emb|BX088573.4| Mouse DNA sequence from clone RP23-78N10 on chromosome 4 Contains the
             3' end of the Dbccr1 gene for deleted in bladder cancer
             chromosome region candidate 1 (human), complete sequence
          Length = 203865

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   tgacaaagcaaactgaaaca 254
             ||||||||||||||||||||
Sbjct: 26642 tgacaaagcaaactgaaaca 26623
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>gb|AC115903.12| Mus musculus chromosome 1, clone RP24-472L18, complete sequence
          Length = 125123

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 447   cttgagcatcctttggggttgaag 470
             ||||||| ||||||||||||||||
Sbjct: 30991 cttgagcttcctttggggttgaag 31014
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>gb|AC110741.5| Homo sapiens chromosome 8, clone RP11-157E21, complete sequence
          Length = 156262

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   agtttatggataaaggaaataaaa 180
             |||||||||||||| |||||||||
Sbjct: 44545 agtttatggataaatgaaataaaa 44522
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>gb|AC122142.1| Caenorhabditis briggsae cosmid CB019M24, complete sequence
          Length = 111147

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 503   tcaacttcagcaccttcagaaactatgg 530
             |||||||||||| ||||||||| |||||
Sbjct: 91763 tcaacttcagcaacttcagaaattatgg 91736
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>gb|AC007541.9| Homo sapiens 12q24.1 BAC RPCI11-412D9 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 143444

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   cagtgtgtccagtttatgga 166
             ||||||||||||||||||||
Sbjct: 79218 cagtgtgtccagtttatgga 79199
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>gb|AC100822.2| Homo sapiens chromosome 8, clone RP11-654O1, complete sequence
          Length = 186380

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 604   cccagcttcaacatcaactc 623
             ||||||||||||||||||||
Sbjct: 85244 cccagcttcaacatcaactc 85263
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>gb|AC025898.10| Homo sapiens chromosome 17, clone RP11-421O15, complete sequence
          Length = 184875

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 528    tggcttgatcaggtttcact 547
              ||||||||||||||||||||
Sbjct: 130543 tggcttgatcaggtttcact 130562
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>gb|AY914797.1| Sulfophobococcus zilligii DNA polymerase gene, complete cds
          Length = 2640

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 603 tcccagcttcaacatcaact 622
           ||||||||||||||||||||
Sbjct: 33  tcccagcttcaacatcaact 52
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>emb|CR405924.1| Gallus gallus finished cDNA, clone ChEST65l3
          Length = 806

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 142 tgttcttctcctccgtgttg 123
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>gb|AC123660.8| Mus musculus chromosome 3, clone RP23-196E24, complete sequence
          Length = 211632

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   ggataaaggaaataaaaatg 183
             ||||||||||||||||||||
Sbjct: 97787 ggataaaggaaataaaaatg 97806
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>emb|BX930819.2| Gallus gallus finished cDNA, clone ChEST965i5
          Length = 699

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 146 tgttcttctcctccgtgttg 127
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>emb|BX930688.2| Gallus gallus finished cDNA, clone ChEST972a21
          Length = 693

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 140 tgttcttctcctccgtgttg 121
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>emb|CR353354.1| Gallus gallus finished cDNA, clone ChEST281k10
          Length = 630

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 133 tgttcttctcctccgtgttg 114
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>gb|AC016770.10| Homo sapiens BAC clone RP11-564H1 from 2, complete sequence
          Length = 191919

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   agtttatggataaaggaaat 176
             ||||||||||||||||||||
Sbjct: 81162 agtttatggataaaggaaat 81181
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>gb|AC154705.2| Mus musculus BAC clone RP23-131F11 from chromosome 16, complete
             sequence
          Length = 177886

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   ggataaaggaaataaaaatg 183
             ||||||||||||||||||||
Sbjct: 86887 ggataaaggaaataaaaatg 86868
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>emb|BX934524.1| Gallus gallus finished cDNA, clone ChEST608a1
          Length = 558

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 122 tgttcttctcctccgtgttg 103
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>emb|BX934427.1| Gallus gallus finished cDNA, clone ChEST971k17
          Length = 696

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 140 tgttcttctcctccgtgttg 121
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>emb|BX933436.1| Gallus gallus finished cDNA, clone ChEST44n18
          Length = 718

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 578 tgttcttctcctccgtgttg 597
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>emb|BX933066.1| Gallus gallus finished cDNA, clone ChEST911g23
          Length = 698

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 143 tgttcttctcctccgtgttg 124
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>emb|BX930710.1| Gallus gallus finished cDNA, clone ChEST962i11
          Length = 692

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 573 tgttcttctcctccgtgttg 592
           ||||||||||||||||||||
Sbjct: 142 tgttcttctcctccgtgttg 123
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>gb|AC112666.9| Mus musculus chromosome 3, clone RP24-119D5, complete sequence
          Length = 193302

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    ggataaaggaaataaaaatg 183
              ||||||||||||||||||||
Sbjct: 159915 ggataaaggaaataaaaatg 159934
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>gb|AY303349.1| Enterobacteria phage RB69, complete genome
          Length = 167560

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 108   aaaattcagaagaaataact 127
             ||||||||||||||||||||
Sbjct: 94911 aaaattcagaagaaataact 94930
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>emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in linkage group 1,
             complete sequence
          Length = 165355

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 620   actccactagatgtatcgtttcct 643
             ||||||||||| ||||||||||||
Sbjct: 66242 actccactagaggtatcgtttcct 66219
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>emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, complete sequence
          Length = 298406

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 535    atcaggtttcacttcactgt 554
              ||||||||||||||||||||
Sbjct: 257926 atcaggtttcacttcactgt 257945
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>gb|AC140282.3| Mus musculus BAC clone RP24-501L1 from 1, complete sequence
          Length = 206690

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 543    tcacttcactgtcctcacat 562
              ||||||||||||||||||||
Sbjct: 168028 tcacttcactgtcctcacat 168009
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>gb|AC101841.5| Mus musculus chromosome 1, clone RP23-251G19, complete sequence
          Length = 174900

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   tcacttcactgtcctcacat 562
             ||||||||||||||||||||
Sbjct: 68153 tcacttcactgtcctcacat 68134
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>emb|AL929007.6| Zebrafish DNA sequence from clone CH211-235E9 in linkage group 1,
              complete sequence
          Length = 187464

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    tcaaaattcagaagaaataa 125
              ||||||||||||||||||||
Sbjct: 101320 tcaaaattcagaagaaataa 101301
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>emb|AL929054.5| Mouse DNA sequence from clone RP23-454A14 on chromosome 2, complete
              sequence
          Length = 198497

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ttcccaagctcctttgcaat 235
              ||||||||||||||||||||
Sbjct: 174363 ttcccaagctcctttgcaat 174344
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>dbj|AP005019.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-169D4, complete
             sequences
          Length = 98501

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   acctctctgatcttcccaag 223
             ||||||||||||||||||||
Sbjct: 84118 acctctctgatcttcccaag 84137


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,812,121
Number of Sequences: 3902068
Number of extensions: 6812121
Number of successful extensions: 145437
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145196
Number of HSP's gapped (non-prelim): 241
length of query: 714
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 691
effective length of database: 17,143,297,704
effective search space: 11846018713464
effective search space used: 11846018713464
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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