ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9b24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, com... 38 6.6
2gb|AC146759.29| Medicago truncatula clone mth2-173e19, complete ... 38 6.6
3emb|AL136114.14| Human DNA sequence from clone RP11-63B19 on chr... 38 6.6
4emb|AL023579.1|HS263O21 Human DNA sequence from clone RP1-263O21... 38 6.6
5gb|AC183100.3| Pan troglodytes BAC clone CH251-736D14 from chrom... 38 6.6
6gb|AC092719.3| Homo sapiens chromosome 16 clone RP11-338J22, com... 38 6.6
7emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in... 38 6.6
8gb|AC106788.3| Homo sapiens chromosome 16 clone RP11-368J21, com... 38 6.6
9emb|BX004962.10| Zebrafish DNA sequence from clone CH211-93N23, ... 38 6.6
10emb|AL954180.6| Zebrafish DNA sequence from clone CH211-222A10, ... 38 6.6
11gb|AF001549.1|HUAF001549 Human Chromosome 16 BAC clone CIT987SK-... 38 6.6
12emb|AL670231.7| Mouse DNA sequence from clone RP23-329G7 on chro... 38 6.6 
>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence
          Length = 165247

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 104    gagagcacaggttccatac 122
              |||||||||||||||||||
Sbjct: 116345 gagagcacaggttccatac 116363
to top
>gb|AC146759.29| Medicago truncatula clone mth2-173e19, complete sequence
          Length = 133602

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     ttcaactccaaaaacagga 66
              |||||||||||||||||||
Sbjct: 107220 ttcaactccaaaaacagga 107238
to top
>emb|AL136114.14| Human DNA sequence from clone RP11-63B19 on chromosome 1, complete
             sequence
          Length = 127892

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    gaccccaaaaacaaactac 91
             |||||||||||||||||||
Sbjct: 91518 gaccccaaaaacaaactac 91536
to top
>emb|AL023579.1|HS263O21 Human DNA sequence from clone RP1-263O21 on chromosome 6q26-27,
             complete sequence
          Length = 70335

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 88    ctacctatggtattttgagagca 110
             |||||||| ||||||||||||||
Sbjct: 54903 ctacctatagtattttgagagca 54881
to top
>gb|AC183100.3| Pan troglodytes BAC clone CH251-736D14 from chromosome 16, complete
             sequence
          Length = 173550

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 83    acaaactacctatggtatt 101
             |||||||||||||||||||
Sbjct: 96611 acaaactacctatggtatt 96593



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 83    acaaactacctatggtatt 101
             |||||||||||||||||||
Sbjct: 96032 acaaactacctatggtatt 96050
to top
>gb|AC092719.3| Homo sapiens chromosome 16 clone RP11-338J22, complete sequence
          Length = 177527

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 83     acaaactacctatggtatt 101
              |||||||||||||||||||
Sbjct: 162770 acaaactacctatggtatt 162752



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 83     acaaactacctatggtatt 101
              |||||||||||||||||||
Sbjct: 162188 acaaactacctatggtatt 162206
to top
>emb|BX322540.5| Zebrafish DNA sequence from clone CH211-247B3 in linkage group 19,
            complete sequence
          Length = 156150

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 45   gcattcaactccaaaaaca 63
            |||||||||||||||||||
Sbjct: 2503 gcattcaactccaaaaaca 2521
to top
>gb|AC106788.3| Homo sapiens chromosome 16 clone RP11-368J21, complete sequence
          Length = 170613

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 83   acaaactacctatggtatt 101
            |||||||||||||||||||
Sbjct: 8895 acaaactacctatggtatt 8877



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 83   acaaactacctatggtatt 101
            |||||||||||||||||||
Sbjct: 8318 acaaactacctatggtatt 8336
to top
>emb|BX004962.10| Zebrafish DNA sequence from clone CH211-93N23, complete sequence
          Length = 170736

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 46     cattcaactccaaaaacag 64
              |||||||||||||||||||
Sbjct: 112204 cattcaactccaaaaacag 112222
to top
>emb|AL954180.6| Zebrafish DNA sequence from clone CH211-222A10, complete sequence
          Length = 225504

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 46     cattcaactccaaaaacag 64
              |||||||||||||||||||
Sbjct: 205052 cattcaactccaaaaacag 205034
to top
>gb|AF001549.1|HUAF001549 Human Chromosome 16 BAC clone CIT987SK-A-270G1, complete sequence
          Length = 202004

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 83     acaaactacctatggtatt 101
              |||||||||||||||||||
Sbjct: 101220 acaaactacctatggtatt 101202



 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 83     acaaactacctatggtatt 101
              |||||||||||||||||||
Sbjct: 100638 acaaactacctatggtatt 100656
to top
>emb|AL670231.7| Mouse DNA sequence from clone RP23-329G7 on chromosome 4, complete
              sequence
          Length = 229957

 Score = 38.2 bits (19), Expect = 6.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 94     atggtattttgagagcaca 112
              |||||||||||||||||||
Sbjct: 111807 atggtattttgagagcaca 111789


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,050,857
Number of Sequences: 3902068
Number of extensions: 1050857
Number of successful extensions: 68464
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68438
Number of HSP's gapped (non-prelim): 26
length of query: 139
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 118
effective length of database: 17,151,101,840
effective search space: 2023830017120
effective search space used: 2023830017120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top