ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1c12 |
|---|---|
| Clone Library Name | barley_pub |
>SL9A1_RAT (P26431) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 820 Score = 33.9 bits (76), Expect = 0.44 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Frame = -2 Query: 380 LDTEQASSTTKEEASQNLNGGGKEKQKESPSAPALRQLFPPG--------RIVHMVAQSS 225 L ++ TT EE ++ +G + KE PS+P +F PG RI ++ Sbjct: 746 LGLKRGPRTTPEEEEEDEDGVIMIRSKE-PSSPGTDDVFTPGPSDSPGSQRIQRCLSDPG 804 Query: 224 PDPNPGEG 201 P P PGEG Sbjct: 805 PHPEPGEG 812
>SL9A1_PIG (P48762) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 818 Score = 33.5 bits (75), Expect = 0.58 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Frame = -2 Query: 380 LDTEQASSTTKEEASQNLNGGGKEKQKESPSAPALRQLFPPG--------RIVHMVAQSS 225 L E +T +E+ ++ +GG + KE PS+P +F P RI ++ Sbjct: 744 LSREPGRATEEEDDDEDHDGGLVMRTKE-PSSPGTDDVFTPAPSDSPSSQRIQRCLSDPG 802 Query: 224 PDPNPGEG 201 P P PGEG Sbjct: 803 PHPEPGEG 810
>TCPH_PONPY (Q5R5C8) T-complex protein 1 subunit eta (TCP-1-eta) (CCT-eta)| Length = 543 Score = 33.5 bits (75), Expect = 0.58 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +3 Query: 87 CTYVTRH--VMLVYHIWREPYSAIQISRRFIYTDGLLAAGAFPRVRVRRGLRDHMNNSPG 260 CT++ R + R + AI I RR I D ++A G + + + LRD+ PG Sbjct: 370 CTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 429 Query: 261 REKL 272 +++L Sbjct: 430 KQQL 433
>TCPH_HUMAN (Q99832) T-complex protein 1 subunit eta (TCP-1-eta) (CCT-eta)| (HIV-1 Nef-interacting protein) Length = 543 Score = 33.5 bits (75), Expect = 0.58 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +3 Query: 87 CTYVTRH--VMLVYHIWREPYSAIQISRRFIYTDGLLAAGAFPRVRVRRGLRDHMNNSPG 260 CT++ R + R + AI I RR I D ++A G + + + LRD+ PG Sbjct: 370 CTFILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 429 Query: 261 REKL 272 +++L Sbjct: 430 KQQL 433
>TCPH_CHICK (Q5ZJK8) T-complex protein 1 subunit eta (TCP-1-eta) (CCT-eta)| Length = 553 Score = 32.7 bits (73), Expect = 0.99 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 132 REPYSAIQISRRFIYTDGLLAAGAFPRVRVRRGLRDHMNNSPGREKL 272 R + AI I RR I D ++A G + + + LRD+ PG+++L Sbjct: 387 RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQL 433
>TCPH_MOUSE (P80313) T-complex protein 1 subunit eta (TCP-1-eta) (CCT-eta)| Length = 544 Score = 32.7 bits (73), Expect = 0.99 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = +3 Query: 132 REPYSAIQISRRFIYTDGLLAAGAFPRVRVRRGLRDHMNNSPGREKL 272 R + AI I RR I D ++A G + + + LRD+ PG+++L Sbjct: 387 RSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQL 433
>AMP2B_ARATH (Q56Y85) Methionine aminopeptidase 2B (EC 3.4.11.18) (MetAP 2B)| (MAP 2B) (Peptidase M 2B) Length = 439 Score = 32.7 bits (73), Expect = 0.99 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Frame = -2 Query: 395 ESNTTLDTEQASSTTKEEASQNLNGGGKE--KQKESPSAPALRQLFPPGRIVHMVAQSSP 222 E N + +A ++TK++ +N + KE +Q + PS P + +LFP G Q Sbjct: 46 EENDGEEGSKAETSTKKKKKKNKSKKKKELPQQTDPPSIPVV-ELFPSGEFPEGEIQEYK 104 Query: 221 DPNPGEGTS-SKETISIYETPRDLYGRIRLA 132 D N TS K + +E P +Y +R A Sbjct: 105 DDNLWRTTSEEKRELERFEKP--IYNSVRRA 133
>SRCA_HUMAN (Q86TD4) Sarcalumenin precursor| Length = 932 Score = 32.0 bits (71), Expect = 1.7 Identities = 20/73 (27%), Positives = 33/73 (45%) Frame = -2 Query: 401 DLESNTTLDTEQASSTTKEEASQNLNGGGKEKQKESPSAPALRQLFPPGRIVHMVAQSSP 222 D E++ + + S E ++ G G+EK + P + PPG V + P Sbjct: 92 DPEASLSNASATESPPPGERDDRDAAGPGEEK-----NGPPVASALPPGGAKGPVEEEWP 146 Query: 221 DPNPGEGTSSKET 183 +P+ GEG +ET Sbjct: 147 EPSSGEGQGEEET 159
>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)| (AH antigen) Length = 3210 Score = 31.6 bits (70), Expect = 2.2 Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 2/188 (1%) Frame = -2 Query: 605 KEAVEI-GQPEENVLKIDCIHESYFVANPEYDLSAVSVDASEERVIVVNNXXXXXXXXXX 429 +E V+I G+ EEN++K + +H+S FVA +S + D S + +V Sbjct: 854 EELVQIKGEIEENLMKAEQMHQS-FVAETSQRISKLQEDTSAHQNVVAE----------T 902 Query: 428 XXXXXXSQGDLE-SNTTLDTEQASSTTKEEASQNLNGGGKEKQKESPSAPALRQLFPPGR 252 + +L+ N ++TEQA ++++ L KE Q S + ++ Sbjct: 903 LSALENKEKELQLLNDKVETEQAEIQELKKSNHLLEDSLKELQLLSETLSLEKK--EMSS 960 Query: 251 IVHMVAQSSPDPNPGEGTSSKETISIYETPRDLYGRIRLAPNMIDEHYMPSYISTMESLL 72 I+ + + + GT + S+ + +L + N IDE IS + Sbjct: 961 IISLNKREIEELTQENGTLKEINASLNQEKMNLIQKSESFANYIDER--EKSISELSDQY 1018 Query: 71 EQXRVITL 48 +Q ++I L Sbjct: 1019 KQEKLILL 1026
>TRC4_ECOLI (P27189) DNA primase traC (EC 2.7.7.-) (Replication primase)| Length = 1061 Score = 31.6 bits (70), Expect = 2.2 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 4/93 (4%) Frame = -2 Query: 377 DTEQASSTTKEEASQNLNGGGKEKQKESPSAPALRQLFPPGRIVHMVAQSSPDPNPGEGT 198 + +Q T ++A + G E+Q++ + PA+ I + P EG Sbjct: 295 EQKQIQEQTTQQAIEPAQGATMEQQQDQVARPAIAPA--DELIAQTLRMYRAGAEPAEGN 352 Query: 197 SS----KETISIYETPRDLYGRIRLAPNMIDEH 111 S ET +E P D GR+++ N+ EH Sbjct: 353 QSLAALTETTLGFELPADWTGRVQVQANVEVEH 385
>SL9A1_RABIT (P23791) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 816 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%) Frame = -2 Query: 347 EEASQNLNGGGKEKQKESPSAPALRQLFPPG--------RIVHMVAQSSPDPNPGEG 201 EEA++ GG + + PS+P +F P R+ ++ P P PGEG Sbjct: 752 EEAAEEDEDGGIVMRPKEPSSPGTDDVFSPAPSDSPSSQRMQRCLSDPGPHPEPGEG 808
>BASP_BOVIN (P80724) Brain acid soluble protein 1 (BASP1 protein) (Neuronal| axonal membrane protein NAP-22) (22 kDa neuronal tissue-enriched acidic protein) Length = 226 Score = 31.6 bits (70), Expect = 2.2 Identities = 23/81 (28%), Positives = 38/81 (46%) Frame = -2 Query: 404 GDLESNTTLDTEQASSTTKEEASQNLNGGGKEKQKESPSAPALRQLFPPGRIVHMVAQSS 225 GD + + + ++ TK++ S+ GG + E+P+APA ++ G SS Sbjct: 119 GDAPKASEAEAAEPAAPTKDDKSKE---GGDATKTEAPAAPAAQETKSDGAPASDSKPSS 175 Query: 224 PDPNPGEGTSSKETISIYETP 162 + P SSKET + E P Sbjct: 176 TEAAP----SSKETPAATEAP 192
>TANA_XENLA (Q01550) Tanabin| Length = 1744 Score = 31.6 bits (70), Expect = 2.2 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 8/131 (6%) Frame = -2 Query: 638 DPNSSISEPLLKEAVEIGQPEENVLKIDCIHESYFVANPEYDLSAVSVDASEERVIVVNN 459 D + ++E L E E N I+ +E+ A+P D+ V + SE+ VI N Sbjct: 1549 DAPNKLTENLNAREKETYDYESNEENIEFTNENQS-ASPANDI--VDENQSEDSVISDNE 1605 Query: 458 XXXXXXXXXXXXXXXXSQGDLESNTTLDTEQASSTTKE--------EASQNLNGGGKEKQ 303 LE + TEQ+S+ TK + QN+ +E + Sbjct: 1606 GTTSSYEDLPNATSISHVVALEESNISTTEQSSTDTKRMTYEGYEITSLQNVEDNAQETE 1665 Query: 302 KESPSAPALRQ 270 KE PS L Q Sbjct: 1666 KEFPSGVPLGQ 1676
>SL9A1_MOUSE (Q61165) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 820 Score = 31.2 bits (69), Expect = 2.9 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Frame = -2 Query: 380 LDTEQASSTTKEEASQNLNGGGKEKQKESPSAPALRQLFPPG--------RIVHMVAQSS 225 L + T EE ++ +G + KE PS+P +F PG RI ++ Sbjct: 746 LGLNRGPRVTPEEEEEDEDGIIMIRSKE-PSSPGTDDVFTPGSSDSPSSQRIQRCLSDPG 804 Query: 224 PDPNPGEG 201 P P PGEG Sbjct: 805 PHPEPGEG 812
>SYR_NEIMA (Q9JTM7) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 572 Score = 30.8 bits (68), Expect = 3.7 Identities = 18/73 (24%), Positives = 29/73 (39%) Frame = +1 Query: 415 DTADPTAESILTSASLLTTMTRSSEASTDTAERSYSGFATKYDSWIQSIFSTFSSGCPIS 594 D PT S L + + + A+ +Y + Y I ++FS F CPI Sbjct: 477 DATAPTVLSEPLEKQLAAELLKFEDVLQSVADTAYPHYLAAYLYQIATLFSRFYEACPIL 536 Query: 595 TASFSKGSEMLEL 633 A + + L+L Sbjct: 537 KAESASRNSRLQL 549
>SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination- and differentiation-dependent factor 1) (ADD1) (Fragment) Length = 1024 Score = 30.8 bits (68), Expect = 3.7 Identities = 22/78 (28%), Positives = 34/78 (43%) Frame = -2 Query: 395 ESNTTLDTEQASSTTKEEASQNLNGGGKEKQKESPSAPALRQLFPPGRIVHMVAQSSPDP 216 + N TL + S + K+ S +GGG + E + L PP +QSSP Sbjct: 352 QENLTLRSAHKSKSLKDLVSACGSGGGTDVSMEGMKPEVVETLTPPPSDAGSPSQSSPLS 411 Query: 215 NPGEGTSSKETISIYETP 162 G+SS + S ++P Sbjct: 412 LGSRGSSSGGSDSEPDSP 429
>ASSY_METAC (Q8TNY5) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 394 Score = 30.8 bits (68), Expect = 3.7 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 10/63 (15%) Frame = -2 Query: 632 NSSISEPLLKE----------AVEIGQPEENVLKIDCIHESYFVANPEYDLSAVSVDASE 483 ++S+ P+LKE +V++GQPEE + K D E ++N Y ++DA E Sbjct: 14 DTSVCIPILKEKYGYDEVITISVDVGQPEEEIKKADAKAEK--ISNKHY-----TIDAKE 66 Query: 482 ERV 474 E V Sbjct: 67 EFV 69
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 30.8 bits (68), Expect = 3.7 Identities = 20/57 (35%), Positives = 31/57 (54%) Frame = +1 Query: 427 PTAESILTSASLLTTMTRSSEASTDTAERSYSGFATKYDSWIQSIFSTFSSGCPIST 597 PT+ S+ +S+S + + SS +S+D +YS T QS+ ST SS P +T Sbjct: 299 PTSSSVSSSSSKVPSNRPSSSSSSDDTTSAYSSTYT-----FQSLQSTTSSSIPPTT 350
>QUEA_DECAR (Q47AX4) S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC| 5.-.-.-) (Queuosine biosynthesis protein queA) Length = 352 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +1 Query: 277 RAGADGDSFCFSLPPPFRFWDAS 345 RAGADGD F L P FW+ S Sbjct: 120 RAGADGDFFALELAEPGDFWELS 142
>THSB_METTH (O26885) Thermosome subunit beta (Thermosome subunit 2) (Chaperonin| beta subunit) Length = 538 Score = 30.0 bits (66), Expect = 6.4 Identities = 18/61 (29%), Positives = 31/61 (50%) Frame = +3 Query: 99 TRHVMLVYHIWREPYSAIQISRRFIYTDGLLAAGAFPRVRVRRGLRDHMNNSPGREKLAQ 278 T HV V + R AI + + ++A G P + + + L+D+ ++ GRE+LA Sbjct: 373 TEHV--VSEVERAIEDAIGVVAATVEDGKVVAGGGAPEIEIAKRLKDYADSISGREQLAV 430 Query: 279 S 281 S Sbjct: 431 S 431
>LOXL1_MOUSE (P97873) Lysyl oxidase homolog 1 precursor (EC 1.4.3.-) (Lysyl| oxidase-like protein 1) (Lysyl oxidase 2) Length = 607 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = -2 Query: 335 QNLNGGGKEKQKESPSA---PALRQLFPPGRIVHMVAQSSPDPNPGEGTSSKETISIY 171 ++ GGG E+Q E P+ PA + + P Q P P P +G + + S+Y Sbjct: 236 EDYGGGGGEEQPEYPAQGFYPAPERPYVPQPQPQPQPQPQPQPQPSDGLDRRYSHSLY 293
>ASSY_METMA (Q8Q0U5) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 394 Score = 30.0 bits (66), Expect = 6.4 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 10/63 (15%) Frame = -2 Query: 632 NSSISEPLLKE----------AVEIGQPEENVLKIDCIHESYFVANPEYDLSAVSVDASE 483 ++S+ P+LKE +V++GQPEE + K D ++ ++N Y ++DA E Sbjct: 14 DTSVCIPILKEKYGYDEVITISVDVGQPEEEIRKADA--KAQKISNKHY-----TIDAKE 66 Query: 482 ERV 474 E V Sbjct: 67 EFV 69
>ADCY2_DROME (Q9VW60) Adenylate cyclase type 2 (EC 4.6.1.1) (ATP| pyrophosphate-lyase 2) (Adenylyl cyclase 76E) Length = 1307 Score = 30.0 bits (66), Expect = 6.4 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%) Frame = -2 Query: 293 PSAPALRQLFPPGRIVHMVAQSSPDPNPGEGTSSKETISIYETP--RDLYGRIRLA--PN 126 P PA P R+V + Q+ P P E KET +E D+ + +A P Sbjct: 492 PPKPAYTYSVP--RVVECIEQNDPSPTTEETKEIKETDQSHEATDVADVLLPVTVAPPPA 549 Query: 125 MIDEHYMPSYISTMESLL 72 ++DE P+ I++ E+ L Sbjct: 550 IVDEKMSPTSINSQEAPL 567
>MPI1_LYMST (P07223) Molluscan insulin-related peptide 1 precursor (MIP I)| [Contains: Molluscan insulin-related peptide 1 B chain; C-alpha peptide; Molluscan insulin-related peptide 1 A chain] Length = 123 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/43 (37%), Positives = 23/43 (53%) Frame = +1 Query: 352 VVDEACSVSNVVLLSRSPCDADTADPTAESILTSASLLTTMTR 480 +VD ACS SN + + + D DP L+S S LT +T+ Sbjct: 55 LVDFACSSSNQPAMVKRNAETDLDDPLRNIKLSSESALTYLTK 97
>ASSY_METBA (P13257) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 396 Score = 29.6 bits (65), Expect = 8.3 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 10/63 (15%) Frame = -2 Query: 632 NSSISEPLLKE----------AVEIGQPEENVLKIDCIHESYFVANPEYDLSAVSVDASE 483 ++S+ P+LKE +V++GQPEE + + D E ++N Y ++DA E Sbjct: 14 DTSVCIPILKEKYGYDEVVTISVDVGQPEEEIKRADAKAEK--ISNKHY-----TIDAKE 66 Query: 482 ERV 474 E V Sbjct: 67 EFV 69
>ANKS1_HUMAN (Q92625) Ankyrin repeat and SAM domain-containing protein 1A (Odin)| Length = 1133 Score = 29.6 bits (65), Expect = 8.3 Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%) Frame = -2 Query: 398 LESNTTLDTEQASSTTKEEASQNLNGGGKEKQKE--SPSAPALRQLFPPGRIVHMVAQSS 225 L T D ++SS+ +++++ +G E+ S+P P +++ QS Sbjct: 467 LVDGKTKDHRRSSSSRSQDSAEGQDGQVPEQFSGLLHGSSPVCEVGQDPFQLLCTAGQSH 526 Query: 224 PDPNPGEGTSSKETISIYETPRDLYGRIRLAPNMIDEHYMPSYISTMESLLEQXRVITL 48 PD +P +G K ++ + ET G + P+ +D+ Y++ + + + TL Sbjct: 527 PDGSPQQGACHKASMQLEETGVHAPGASQ--PSALDQSKRVGYLTGLPTTNSRSHPETL 583
>YCDA_DROME (Q9VGW1) Putative cadherin CG4509 precursor| Length = 1483 Score = 29.6 bits (65), Expect = 8.3 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 3/97 (3%) Frame = -1 Query: 375 HRTSLVDNKRRSVPESERWR*RKTERITVRPRSAPTFPSRENCSYGRAVLSGPEPWGRHQ 196 HR + +SV +E W R+ +P T P+R GR L G+ Sbjct: 527 HREMANGKQTKSVQVAE-WMGRRDAWSAEKPPDTRTKPTRWEFHDGREQLDEDVGRGQDI 585 Query: 195 QQGDHQYI*NAERFVWQNKARAKYDRRA---LHA*LH 94 +GD ++I +AE Q + R K++R A LH H Sbjct: 586 GEGDRRHIQSAEE--QQRRVRIKHNRTAKDDLHLNFH 620 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,549,979 Number of Sequences: 219361 Number of extensions: 1997503 Number of successful extensions: 6495 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 6147 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6485 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
