ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd1c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185088.1| Oryza sativa (japonica cultivar-group), mRNA 141 3e-30
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 141 3e-30
3gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 141 3e-30
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 141 3e-30
5gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genom... 141 3e-30
6dbj|AK066720.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 3e-30
7gb|AC104805.3| Homo sapiens BAC clone RP11-571N1 from 4, complet... 46 0.15
8gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, compl... 44 0.58
9dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 44 0.58
10gb|U95626.1|HSU95626 Homo sapiens ccr2b (ccr2), ccr2a (ccr2), cc... 44 0.58
11gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosom... 42 2.3
12gb|AE014309.1| Homo sapiens chromosome 13q34 schizophrenia regio... 42 2.3
13emb|AL161897.6| Human DNA sequence from clone RP11-262G14 on chr... 42 2.3
14gb|AF299725.1|AF299725 HIV-1 isolate DBPNH4e.07 from USA, envelo... 42 2.3
15gb|AF299722.1|AF299722 HIV-1 isolate DBPNH4e.04 from USA, envelo... 42 2.3
16gb|AF299703.1|AF299703 HIV-1 isolate DBP0e.08 from USA, envelope... 42 2.3
17gb|AF299700.1|AF299700 HIV-1 isolate DBP0e.04 from USA, envelope... 42 2.3
18gb|AF299863.1|AF299863 HIV-1 isolate DeVNH4e.13 from USA, envelo... 42 2.3
19gb|AF299862.1|AF299862 HIV-1 isolate DeVNH4e.11 from USA, envelo... 42 2.3
20gb|AF299861.1|AF299861 HIV-1 isolate DeVNH4e.10 from USA, envelo... 42 2.3
21gb|AF299859.1|AF299859 HIV-1 isolate DeVNH4e.08 from USA, envelo... 42 2.3
22gb|AF299857.1|AF299857 HIV-1 isolate DeVNH4e.06 from USA, envelo... 42 2.3
23gb|AF299855.1|AF299855 HIV-1 isolate DeVNH4e.04 from USA, envelo... 42 2.3
24gb|AF299853.1|AF299853 HIV-1 isolate DeVNH4e.02 from USA, envelo... 42 2.3
25gb|AF299852.1|AF299852 HIV-1 isolate DeVNH4e.01 from USA, envelo... 42 2.3
26emb|BX294194.10| Mouse DNA sequence from clone RP23-342D10 on ch... 42 2.3
27gb|AC146259.4| Pan troglodytes BAC clone RP43-28H17 from 7, comp... 40 9.0
28gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, comp... 40 9.0
29gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, co... 40 9.0
30gb|AC004888.1| Homo sapiens PAC clone RP4-797C5 from 7, complete... 40 9.0
31gb|DQ485452.1| Homo sapiens protein kinase D1 (PRKD1) gene, comp... 40 9.0
32gb|AC117194.3| Mus musculus BAC clone RP23-92K11 from 12, comple... 40 9.0
33emb|BX928753.10| Zebrafish DNA sequence from clone DKEY-5J3 in l... 40 9.0
34emb|AL499602.6| Human DNA sequence from clone RP11-158H18 on chr... 40 9.0
35emb|AL158147.17| Human DNA sequence from clone RP11-125K10 on ch... 40 9.0
36emb|AL080243.21|HSBA12M9 Human DNA sequence from clone RP11-12M9... 40 9.0
37ref|XM_961979.1| PREDICTED: Tribolium castaneum similar to CG124... 40 9.0
38emb|BX927328.10| Zebrafish DNA sequence from clone CH211-10M4 in... 40 9.0
39emb|CR354424.7| Zebrafish DNA sequence from clone CH211-125L9 in... 40 9.0
40emb|BX088585.4| Mouse DNA sequence from clone RP23-185A14 on chr... 40 9.0
41gb|AC094108.2| Homo sapiens chromosome 5 clone RP11-58B2, comple... 40 9.0
42gb|AC161372.2| Mus musculus BAC clone RP23-326G14 from chromosom... 40 9.0
43emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 i... 40 9.0
44gb|AC016447.5|AC016447 Arabidopsis thaliana chromosome 1 BAC T22... 40 9.0
45dbj|AK113643.1| Ciona intestinalis cDNA, clone:cicl002b15, full ... 40 9.0
46gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, compl... 40 9.0
47gb|U05430.1|HIV1U05430 Human immunodeficiency virus type 1, clon... 40 9.0
48emb|AL355053.4|CNS05TC5 Human chromosome 14 DNA sequence BAC C-2... 40 9.0 
>ref|NM_185088.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1841

 Score =  141 bits (71), Expect = 3e-30
 Identities = 170/203 (83%)
 Strand = Plus / Minus

                                                                        
Query: 66   ctgttccaacaatgactccattgtacttatgtaactaggcatgtaatgctcgtctatcat 125
            ||||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 1740 ctgttccaataatgattccattgtgcttatgtaactaggcatgtaatgctcctttatcat 1681

                                                                        
Query: 126  atttggcgcgagccttattctgccatacaaatctctcggcgtttcatatatactgatggt 185
             ||||| || ||||||||| | |||||||||||||| ||||||||||| || || ||| |
Sbjct: 1680 gtttggagctagccttattttcccatacaaatctcttggcgtttcataaatgctaatgat 1621

                                                                        
Query: 186  ctccttgctgctggtgccttccccagggttcgggtccggagaggactgcgcgaccatatg 245
            ||| ||||||||||  || || ||||| || ||||| || |||| |   || ||||| ||
Sbjct: 1620 ctcattgctgctggatccctcaccaggatttgggtcaggtgaggccattgcaaccatgtg 1561

                                   
Query: 246  aacaattctcccgggagggaaaa 268
            || |||||| || ||||||||||
Sbjct: 1560 aataattcttccaggagggaaaa 1538
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  141 bits (71), Expect = 3e-30
 Identities = 170/203 (83%)
 Strand = Plus / Plus

                                                                            
Query: 66       ctgttccaacaatgactccattgtacttatgtaactaggcatgtaatgctcgtctatcat 125
                ||||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 34592554 ctgttccaataatgattccattgtgcttatgtaactaggcatgtaatgctcctttatcat 34592613

                                                                            
Query: 126      atttggcgcgagccttattctgccatacaaatctctcggcgtttcatatatactgatggt 185
                 ||||| || ||||||||| | |||||||||||||| ||||||||||| || || ||| |
Sbjct: 34592614 gtttggagctagccttattttcccatacaaatctcttggcgtttcataaatgctaatgat 34592673

                                                                            
Query: 186      ctccttgctgctggtgccttccccagggttcgggtccggagaggactgcgcgaccatatg 245
                ||| ||||||||||  || || ||||| || ||||| || |||| |   || ||||| ||
Sbjct: 34592674 ctcattgctgctggatccctcaccaggatttgggtcaggtgaggccattgcaaccatgtg 34592733

                                       
Query: 246      aacaattctcccgggagggaaaa 268
                || |||||| || ||||||||||
Sbjct: 34592734 aataattcttccaggagggaaaa 34592756
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
             sequence
          Length = 164236

 Score =  141 bits (71), Expect = 3e-30
 Identities = 170/203 (83%)
 Strand = Plus / Plus

                                                                         
Query: 66    ctgttccaacaatgactccattgtacttatgtaactaggcatgtaatgctcgtctatcat 125
             ||||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 50271 ctgttccaataatgattccattgtgcttatgtaactaggcatgtaatgctcctttatcat 50330

                                                                         
Query: 126   atttggcgcgagccttattctgccatacaaatctctcggcgtttcatatatactgatggt 185
              ||||| || ||||||||| | |||||||||||||| ||||||||||| || || ||| |
Sbjct: 50331 gtttggagctagccttattttcccatacaaatctcttggcgtttcataaatgctaatgat 50390

                                                                         
Query: 186   ctccttgctgctggtgccttccccagggttcgggtccggagaggactgcgcgaccatatg 245
             ||| ||||||||||  || || ||||| || ||||| || |||| |   || ||||| ||
Sbjct: 50391 ctcattgctgctggatccctcaccaggatttgggtcaggtgaggccattgcaaccatgtg 50450

                                    
Query: 246   aacaattctcccgggagggaaaa 268
             || |||||| || ||||||||||
Sbjct: 50451 aataattcttccaggagggaaaa 50473
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  141 bits (71), Expect = 3e-30
 Identities = 170/203 (83%)
 Strand = Plus / Plus

                                                                            
Query: 66       ctgttccaacaatgactccattgtacttatgtaactaggcatgtaatgctcgtctatcat 125
                ||||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 34682626 ctgttccaataatgattccattgtgcttatgtaactaggcatgtaatgctcctttatcat 34682685

                                                                            
Query: 126      atttggcgcgagccttattctgccatacaaatctctcggcgtttcatatatactgatggt 185
                 ||||| || ||||||||| | |||||||||||||| ||||||||||| || || ||| |
Sbjct: 34682686 gtttggagctagccttattttcccatacaaatctcttggcgtttcataaatgctaatgat 34682745

                                                                            
Query: 186      ctccttgctgctggtgccttccccagggttcgggtccggagaggactgcgcgaccatatg 245
                ||| ||||||||||  || || ||||| || ||||| || |||| |   || ||||| ||
Sbjct: 34682746 ctcattgctgctggatccctcaccaggatttgggtcaggtgaggccattgcaaccatgtg 34682805

                                       
Query: 246      aacaattctcccgggagggaaaa 268
                || |||||| || ||||||||||
Sbjct: 34682806 aataattcttccaggagggaaaa 34682828
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>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete
             sequence
          Length = 129302

 Score =  141 bits (71), Expect = 3e-30
 Identities = 170/203 (83%)
 Strand = Plus / Minus

                                                                         
Query: 66    ctgttccaacaatgactccattgtacttatgtaactaggcatgtaatgctcgtctatcat 125
             ||||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 50779 ctgttccaataatgattccattgtgcttatgtaactaggcatgtaatgctcctttatcat 50720

                                                                         
Query: 126   atttggcgcgagccttattctgccatacaaatctctcggcgtttcatatatactgatggt 185
              ||||| || ||||||||| | |||||||||||||| ||||||||||| || || ||| |
Sbjct: 50719 gtttggagctagccttattttcccatacaaatctcttggcgtttcataaatgctaatgat 50660

                                                                         
Query: 186   ctccttgctgctggtgccttccccagggttcgggtccggagaggactgcgcgaccatatg 245
             ||| ||||||||||  || || ||||| || ||||| || |||| |   || ||||| ||
Sbjct: 50659 ctcattgctgctggatccctcaccaggatttgggtcaggtgaggccattgcaaccatgtg 50600

                                    
Query: 246   aacaattctcccgggagggaaaa 268
             || |||||| || ||||||||||
Sbjct: 50599 aataattcttccaggagggaaaa 50577
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>dbj|AK066720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087E11, full
            insert sequence
          Length = 1927

 Score =  141 bits (71), Expect = 3e-30
 Identities = 170/203 (83%)
 Strand = Plus / Minus

                                                                        
Query: 66   ctgttccaacaatgactccattgtacttatgtaactaggcatgtaatgctcgtctatcat 125
            ||||||||| ||||| |||||||| |||||||||||||||||||||||||| | ||||||
Sbjct: 1826 ctgttccaataatgattccattgtgcttatgtaactaggcatgtaatgctcctttatcat 1767

                                                                        
Query: 126  atttggcgcgagccttattctgccatacaaatctctcggcgtttcatatatactgatggt 185
             ||||| || ||||||||| | |||||||||||||| ||||||||||| || || ||| |
Sbjct: 1766 gtttggagctagccttattttcccatacaaatctcttggcgtttcataaatgctaatgat 1707

                                                                        
Query: 186  ctccttgctgctggtgccttccccagggttcgggtccggagaggactgcgcgaccatatg 245
            ||| ||||||||||  || || ||||| || ||||| || |||| |   || ||||| ||
Sbjct: 1706 ctcattgctgctggatccctcaccaggatttgggtcaggtgaggccattgcaaccatgtg 1647

                                   
Query: 246  aacaattctcccgggagggaaaa 268
            || |||||| || ||||||||||
Sbjct: 1646 aataattcttccaggagggaaaa 1624
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>gb|AC104805.3| Homo sapiens BAC clone RP11-571N1 from 4, complete sequence
          Length = 164347

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 191    tgctgctggtgccttccccaggg 213
              |||||||||||||||||||||||
Sbjct: 103728 tgctgctggtgccttccccaggg 103750
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>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence
          Length = 185437

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 409   gatgcagatactgctgacccaa 430
             ||||||||||||||||||||||
Sbjct: 67445 gatgcagatactgctgacccaa 67466
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>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 411    tgcagatactgctgacccaaca 432
              ||||||||||||||||||||||
Sbjct: 318772 tgcagatactgctgacccaaca 318751
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>gb|U95626.1|HSU95626 Homo sapiens ccr2b (ccr2), ccr2a (ccr2), ccr5 (ccr5) and ccr6 (ccr6)
             genes, complete cds, and lactoferrin (lactoferrin) gene,
             partial cds, complete sequence
          Length = 143068

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 409   gatgcagatactgctgacccaa 430
             ||||||||||||||||||||||
Sbjct: 99478 gatgcagatactgctgacccaa 99499
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>gb|AC108947.5| Mus musculus BAC clone RP23-140A11 from chromosome 13, complete
             sequence
          Length = 187401

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 413   cagatactgctgacccaacag 433
             |||||||||||||||||||||
Sbjct: 86050 cagatactgctgacccaacag 86070
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>gb|AE014309.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 6
            of 11 of the complete sequence
          Length = 250029

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 294  tgattctttctgtttttcttt 314
            |||||||||||||||||||||
Sbjct: 2745 tgattctttctgtttttcttt 2765
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>emb|AL161897.6| Human DNA sequence from clone RP11-262G14 on chromosome 13, complete
              sequence
          Length = 160455

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 294    tgattctttctgtttttcttt 314
              |||||||||||||||||||||
Sbjct: 140280 tgattctttctgtttttcttt 140300
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>gb|AF299725.1|AF299725 HIV-1 isolate DBPNH4e.07 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299722.1|AF299722 HIV-1 isolate DBPNH4e.04 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299703.1|AF299703 HIV-1 isolate DBP0e.08 from USA, envelope glycoprotein (env) gene,
           partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299700.1|AF299700 HIV-1 isolate DBP0e.04 from USA, envelope glycoprotein (env) gene,
           partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299863.1|AF299863 HIV-1 isolate DeVNH4e.13 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299862.1|AF299862 HIV-1 isolate DeVNH4e.11 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299861.1|AF299861 HIV-1 isolate DeVNH4e.10 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299859.1|AF299859 HIV-1 isolate DeVNH4e.08 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299857.1|AF299857 HIV-1 isolate DeVNH4e.06 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299855.1|AF299855 HIV-1 isolate DeVNH4e.04 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299853.1|AF299853 HIV-1 isolate DeVNH4e.02 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>gb|AF299852.1|AF299852 HIV-1 isolate DeVNH4e.01 from USA, envelope glycoprotein (env)
           gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 589 atttctactgcttctttcagt 609
           |||||||||||||||||||||
Sbjct: 68  atttctactgcttctttcagt 48
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>emb|BX294194.10| Mouse DNA sequence from clone RP23-342D10 on chromosome X, complete
              sequence
          Length = 142001

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 559    atcttcagcacattttcttca 579
              |||||||||||||||||||||
Sbjct: 115921 atcttcagcacattttcttca 115941
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>gb|AC146259.4| Pan troglodytes BAC clone RP43-28H17 from 7, complete sequence
          Length = 156725

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   attctttctgtttttcttta 315
             ||||||||||||||||||||
Sbjct: 79640 attctttctgtttttcttta 79659
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>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence
          Length = 182677

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     tacttatgtaactaggcatg 108
              ||||||||||||||||||||
Sbjct: 120371 tacttatgtaactaggcatg 120390
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>gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, complete sequence
          Length = 278715

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 178    ctgatggtctccttgctgctggtg 201
              ||||||||||||||||| ||||||
Sbjct: 181968 ctgatggtctccttgcttctggtg 181945
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>gb|AC004888.1| Homo sapiens PAC clone RP4-797C5 from 7, complete sequence
          Length = 157466

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 296    attctttctgtttttcttta 315
              ||||||||||||||||||||
Sbjct: 112221 attctttctgtttttcttta 112202
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>gb|DQ485452.1| Homo sapiens protein kinase D1 (PRKD1) gene, complete cds
          Length = 355200

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   ttctttctgtttttctttac 316
             ||||||||||||||||||||
Sbjct: 16312 ttctttctgtttttctttac 16293
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>gb|AC117194.3| Mus musculus BAC clone RP23-92K11 from 12, complete sequence
          Length = 204913

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 541   gattcatggatacagtcaat 560
             ||||||||||||||||||||
Sbjct: 77977 gattcatggatacagtcaat 77996
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>emb|BX928753.10| Zebrafish DNA sequence from clone DKEY-5J3 in linkage group 17,
             complete sequence
          Length = 159225

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 560   tcttcagcacattttcttca 579
             ||||||||||||||||||||
Sbjct: 96836 tcttcagcacattttcttca 96855
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>emb|AL499602.6| Human DNA sequence from clone RP11-158H18 on chromosome 9 Contains a
             novel gene and two CpG islands, complete sequence
          Length = 175560

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 558   aatcttcagcacattttctt 577
             ||||||||||||||||||||
Sbjct: 54551 aatcttcagcacattttctt 54570
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>emb|AL158147.17| Human DNA sequence from clone RP11-125K10 on chromosome 9p24.1-24.3
              Contains the 3' end of the gene for RNA cyclase homolog
              (RNAC), a miR-101-precursor-9 micro RNA, a novel gene, a
              heterogeneous nuclear ribonucleoprotein A1 (HNRPA1)
              pseudogene, the 5' UTR of the JAK2 gene for Janus kinase 2
              (a protein tyrosine kinase) and a CpG island, complete
              sequence
          Length = 172186

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     tacttatgtaactaggcatg 108
              ||||||||||||||||||||
Sbjct: 153533 tacttatgtaactaggcatg 153514
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>emb|AL080243.21|HSBA12M9 Human DNA sequence from clone RP11-12M9 on chromosome 22, complete
              sequence
          Length = 176287

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    ttctttctgtttttctttac 316
              ||||||||||||||||||||
Sbjct: 158136 ttctttctgtttttctttac 158155
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>ref|XM_961979.1| PREDICTED: Tribolium castaneum similar to CG1244-PA, isoform A
            (LOC655434), mRNA
          Length = 3183

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 339  cgcttcttcttttgttgtcg 358
            ||||||||||||||||||||
Sbjct: 1445 cgcttcttcttttgttgtcg 1426
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>emb|BX927328.10| Zebrafish DNA sequence from clone CH211-10M4 in linkage group 17,
             complete sequence
          Length = 197949

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 560   tcttcagcacattttcttca 579
             ||||||||||||||||||||
Sbjct: 25937 tcttcagcacattttcttca 25956
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>emb|CR354424.7| Zebrafish DNA sequence from clone CH211-125L9 in linkage group 24,
             complete sequence
          Length = 156999

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    ctccattgtacttatgtaac 100
             ||||||||||||||||||||
Sbjct: 88759 ctccattgtacttatgtaac 88778
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>emb|BX088585.4| Mouse DNA sequence from clone RP23-185A14 on chromosome 4, complete
             sequence
          Length = 43212

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 631   ttgggatctgcagtctttcc 650
             ||||||||||||||||||||
Sbjct: 38973 ttgggatctgcagtctttcc 38954
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>gb|AC094108.2| Homo sapiens chromosome 5 clone RP11-58B2, complete sequence
          Length = 162399

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ccttattctgccatacaaat 157
             ||||||||||||||||||||
Sbjct: 57949 ccttattctgccatacaaat 57968
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>gb|AC161372.2| Mus musculus BAC clone RP23-326G14 from chromosome 16, complete sequence
          Length = 208994

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     catctgatgctgtacttaca 49
              ||||||||||||||||||||
Sbjct: 145290 catctgatgctgtacttaca 145309
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>emb|BX510931.8| Zebrafish DNA sequence from clone CH211-132M19 in linkage group 21,
              complete sequence
          Length = 181237

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 509    aaaggtcatactctggattt 528
              ||||||||||||||||||||
Sbjct: 106953 aaaggtcatactctggattt 106972
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>gb|AC016447.5|AC016447 Arabidopsis thaliana chromosome 1 BAC T22E19 genomic sequence, complete
             sequence
          Length = 107816

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 293   gtgattctttctgtttttctttac 316
             |||||||||||||||| |||||||
Sbjct: 33751 gtgattctttctgtttatctttac 33774
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>dbj|AK113643.1| Ciona intestinalis cDNA, clone:cicl002b15, full insert sequence
          Length = 1717

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 18  tggttcacaaatcatctgat 37
           ||||||||||||||||||||
Sbjct: 559 tggttcacaaatcatctgat 578
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>gb|AC123862.5| Mus musculus BAC clone RP23-356A24 from 16, complete sequence
          Length = 223030

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    catctgatgctgtacttaca 49
             ||||||||||||||||||||
Sbjct: 15565 catctgatgctgtacttaca 15584
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>gb|U05430.1|HIV1U05430 Human immunodeficiency virus type 1, clone 2BR366, envelope
           glycoprotein c2v3 region (env) gene, partial cds
          Length = 162

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 589 atttctactgcttctttcag 608
           ||||||||||||||||||||
Sbjct: 63  atttctactgcttctttcag 44
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>emb|AL355053.4|CNS05TC5 Human chromosome 14 DNA sequence BAC C-2305P23 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 125977

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   ttctttctgtttttctttac 316
             ||||||||||||||||||||
Sbjct: 41621 ttctttctgtttttctttac 41602


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,517,557
Number of Sequences: 3902068
Number of extensions: 5517557
Number of successful extensions: 102541
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102358
Number of HSP's gapped (non-prelim): 183
length of query: 660
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 637
effective length of database: 17,143,297,704
effective search space: 10920280637448
effective search space used: 10920280637448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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