ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal8m21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YO092_YEAST (Q12010) Uncharacterized protein YOL092W 35 0.19
2STM1_SCHPO (Q10482) Seven transmembrane protein 1 30 4.6
3PERN_IPOBA (O04796) Neutral peroxidase precursor (EC 1.11.1.7) (... 30 6.1
4NODU_AZOCA (Q07759) Nodulation protein U (EC 2.1.3.-) 30 7.9

>YO092_YEAST (Q12010) Uncharacterized protein YOL092W|
          Length = 308

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 637 SILVNSLDWARLRPNLPWLVDAGGCVLLDSFIIFQFLYFHYRKQ 506
           S++V SLDW  L  N  WLV + G + +D  I  QF  +   K+
Sbjct: 261 SVIVISLDWKYLIMNASWLVGSIGTLFMDFVIFSQFFIYKRNKK 304



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>STM1_SCHPO (Q10482) Seven transmembrane protein 1|
          Length = 271

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 595 NLPWLVDAGGCVLLDSFIIFQFLYF--HY 515
           NLPW++ A   + LD +I +QF+ +  HY
Sbjct: 243 NLPWILGAFSTIFLDIYIFYQFIKYRNHY 271



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>PERN_IPOBA (O04796) Neutral peroxidase precursor (EC 1.11.1.7) (SwPN1)|
          Length = 348

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 357 PCLCSSARGVAIVQLSKKNAQSPCRCSPIS 446
           P   +S RG +++  +K+NAQ+ C  +P+S
Sbjct: 126 PANSNSVRGFSVIDQAKRNAQTKCADTPVS 155



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>NODU_AZOCA (Q07759) Nodulation protein U (EC 2.1.3.-)|
          Length = 560

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 34  EHLDKIGLVPHKKNLQMSNAEPYLESGW 117
           EH D+I L  H+   Q S+ + Y+  GW
Sbjct: 41  EHTDEIALALHRSGFQPSDIDEYIIDGW 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,119,069
Number of Sequences: 219361
Number of extensions: 1981794
Number of successful extensions: 3922
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3922
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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