>BAG3_MOUSE (Q9JLV1) BAG family molecular chaperone regulator 3 (BCL-2-binding|
           athanogene-3) (BAG-3) (Bcl-2-binding protein Bis)
          Length = 577

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -3

Query: 301 QKSGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNE 143
           Q+S S   GG  E  +T ++ G  P+TA+  T   +PP +     S SPA ++
Sbjct: 134 QRSQSPLRGGMTEAAQTDKQCGQMPATAT--TAAAQPPTAHGPERSQSPAASD 184

>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 271  QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 155
            ++E +  +++AG  PS+ S    R RPP   Q S   SP
Sbjct: 3468 EREAVERLQKAGPKPSSLSMAHSRVRPPMRSQASEEESP 3506

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 295  SGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 155
            S S  +  ++E  + +++AG  PS+ S    R RPP   Q S   SP
Sbjct: 3456 SRSKGYERERETAQRLQKAGPKPSSLSMAHGRARPPMRSQASEEESP 3502

>CWC21_CRYNE (Q5KDV1) Pre-mRNA-splicing factor CWC21|
          Length = 205

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -2

Query: 299 EVRVSKMGRAAGVLENHEEGRRY 231
           E+ +S++ RA GV  NHEEGR +
Sbjct: 125 EIEMSRLQRALGVSVNHEEGRAF 147

>AFF3_HUMAN (P51826) AF4/FMR2 family member 3 (LAF-4 protein) (Lymphoid nuclear|
           protein related to AF4)
          Length = 1227

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 271 QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSS 158
           QQ   RT  RA +  +   +P CRT  P S   S+SSS
Sbjct: 381 QQAAQRTALRALSDSAVVQQPNCRTSVPSSKGSSSSSS 418

>WDR50_MOUSE (Q5SSI6) WD-repeat protein 50|
          Length = 552

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 256 RTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNEA 140
           R  RRAGATP   + P   + P ++ + S  + PA   A
Sbjct: 10  RRDRRAGATPGRKARPGSGSTPAKAARSSQRTQPAEPRA 48

>PDZK2_HUMAN (Q86UT5) PDZ domain-containing protein 2 (Intestinal and|
           kidney-enriched PDZ protein) (DLNB27 protein)
          Length = 571

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +3

Query: 189 GGLVLHVGSEAVLGVAPALLMVLKHSCCPPHLADP 293
           G  V     E VLG+ P L +     CCPPH  DP
Sbjct: 77  GHRVCQAHGEPVLGLCPLLPLF----CCPPHPPDP 107

>BPHF_SPHAR (O86013) 4-hydroxy-2-oxovalerate aldolase (EC 4.1.2.-)|
          Length = 262

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
 Frame = -2

Query: 365 AATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLENHEE--------GRRYAEHGLRA 210
           AAT   +G  +F  L  +TG    R+   G+ AG+L   E         G R+  +G+ +
Sbjct: 179 AATEGLLGASSFDALFKLTGEALARIVATGKPAGILSRDERLVQQFLDGGARFIANGIDS 238

Query: 209 Y 207
           +
Sbjct: 239 F 239

>TSH_DROME (P22265) Protein teashirt|
          Length = 954

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
 Frame = -3

Query: 247 RRAGATPSTASEPTCRTRPPRSCQES----TSSSPA 152
           R +  TPS+A+ P  R  PPRS  ES    T  SPA
Sbjct: 839 RSSPKTPSSAASPQTRLLPPRSPAESQRSVTPKSPA 874

>NTHL1_HUMAN (P78549) Endonuclease III-like protein 1 (EC 4.2.99.18)|
          Length = 312

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 177 WHDLGGLVLHVGSEAVLGVAPALLMVLKHSCCP 275
           WH++ GL++  G +  L V P     L  + CP
Sbjct: 275 WHEINGLLVGFGQQTCLPVHPRCHACLNQALCP 307

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 271  QQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSP 155
            +++    +++AG+ PS+ S    R RPP   Q S   SP
Sbjct: 3478 ERDTAERLQKAGSKPSSLSMAHGRARPPMRSQASEEESP 3516

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (hN2) [Contains: Notch 2 extracellular truncation; Notch
            2 intracellular domain]
          Length = 2471

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 274  GQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARN 146
            GQ +C    R+      TAS P C    PR C+   +SSP ++
Sbjct: 1347 GQVKC----RKGEQCVHTASGPRCFCPSPRDCESGCASSPCQH 1385

>RS15_ACIAD (Q6FF13) 30S ribosomal protein S15|
          Length = 89

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 341 ICAFSLLRNITGNPEVRVSKMGRAAGVLENHEEGRRYAEHGLRAYVQ 201
           I  F+   N TG+PEV+V+ +      L+ H +  ++  H  R  ++
Sbjct: 12  IAKFARAENDTGSPEVQVALLTAQINDLQGHFKEHKHDHHSRRGLIR 58

>ERFB_GIBZE (Q4I2M7) Palmitoyltransferase ERF2 (EC 2.3.1.-) (DHHC cysteine-rich|
           domain-containing protein ERF2) (Ras protein
           acyltransferase)
          Length = 679

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 304 TQKSGSARWGGQQECLRTMRRAGATPSTASEPTCRTRPPRSCQESTSSSPARNEAL 137
           +QK  + R G  +    +   A A+PS+ + PT  T  PRS +   SSS    +++
Sbjct: 130 SQKLQAQRGGSHRPSTMSQMSAAASPSSPTSPTSPT-SPRSDEHGESSSSQMRQSI 184

>Y502_TREPA (O83515) Hypothetical ANK-repeat protein TP0502|
          Length = 298

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -2

Query: 326 LLRNITGNPEVRVSKMGRAAGVL----ENHEEGRRYAEHGLRAYVQDKTPEIMPGINKFF 159
           LL +   +P VR S  G+ A VL    ++H   R   +HG   Y++DK      G  K F
Sbjct: 229 LLLHAGADPNVRGSN-GQTALVLAVGRKDHVLIRLLMDHGANPYLEDKLGLSAQGYAKLF 287

Query: 158 TSPK*STL 135
             P   TL
Sbjct: 288 NDPTLCTL 295

>HEM1_CHLVI (P28462) Glutamyl-tRNA reductase (EC 1.2.1.70) (GluTR)|
          Length = 424

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 232 TPSTASEPTCRTRPPRSCQE 173
           TP T+S PT R   PR+C+E
Sbjct: 204 TPGTSSSPTGRNPRPRACEE 223

>PAD1_YEAST (P33751) Phenylacrylic acid decarboxylase (EC 4.1.1.-) (PAD)|
          Length = 242

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -2

Query: 380 VXPLFAATGVAIGICAFSLLRNITGNPEVRVSKMGRAAGVLENHEEGRRYAEHGLRAY-V 204
           V  +  ATGVA+GI    +L+ ++    + +SK G A    E   E    A    + Y V
Sbjct: 58  VVAITGATGVALGIRLLQVLKELSVETHLVISKWGAATMKYETDWEPHDVAALATKTYSV 117

Query: 203 QDKTPEIMPG 174
           +D +  I  G
Sbjct: 118 RDVSACISSG 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,428,016
Number of Sequences: 219361
Number of extensions: 783464
Number of successful extensions: 2788
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2778
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)