ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd1a04 |
|---|---|
| Clone Library Name | barley_pub |
>CESA7_ARATH (Q9SWW6) Cellulose synthase A catalytic subunit 7 [UDP-forming] (EC| 2.4.1.12) (AtCesA-7) (Irregular xylem protein 3) (AtIRX3) Length = 1026 Score = 211 bits (538), Expect = 1e-54 Identities = 92/129 (71%), Positives = 112/129 (86%) Frame = -3 Query: 586 AVDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWX 407 ++++WWRNEQFWVIGG+SAHLFAV QGLLK++AG+DT+FTVT+KA DD++F ELY FKW Sbjct: 863 SIEEWWRNEQFWVIGGISAHLFAVVQGLLKILAGIDTNFTVTSKATDDDDFGELYAFKWT 922 Query: 406 XXXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQ 227 +N +GVVAGIS+AINNGY+SWGPLFGKLFF+FWVIVHLYPFLKGL+GRQ Sbjct: 923 TLLIPPTTVLIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQ 982 Query: 226 NRTPTIVIV 200 NRTPTIV++ Sbjct: 983 NRTPTIVVI 991
>CESA3_ARATH (Q941L0) Cellulose synthase A catalytic subunit 3 [UDP-forming] (EC| 2.4.1.12) (AtCesA-3) (Constitutive expression of VSP1 protein 1) (Isoxaben resistant protein 1) (Ath-B) Length = 1065 Score = 208 bits (529), Expect = 1e-53 Identities = 94/129 (72%), Positives = 112/129 (86%), Gaps = 1/129 (0%) Frame = -3 Query: 583 VDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDE-EFSELYTFKWX 407 +D+WWRNEQFWVIGGVSAHLFAVFQG+LKV+AG+DT+FTVT+KA D++ +F+ELY FKW Sbjct: 902 IDEWWRNEQFWVIGGVSAHLFAVFQGILKVLAGIDTNFTVTSKASDEDGDFAELYLFKWT 961 Query: 406 XXXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQ 227 +N +GVVAG+S AIN+GY+SWGPLFGKLFFAFWVIVHLYPFLKGL+GRQ Sbjct: 962 TLLIPPTTLLIVNLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQ 1021 Query: 226 NRTPTIVIV 200 NRTPTIV+V Sbjct: 1022 NRTPTIVVV 1030
>CESA5_ARATH (Q8L778) Cellulose synthase A catalytic subunit 5 [UDP-forming] (EC| 2.4.1.12) (AtCesA-5) Length = 1069 Score = 207 bits (526), Expect = 2e-53 Identities = 93/128 (72%), Positives = 110/128 (85%) Frame = -3 Query: 583 VDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXX 404 +DDWWRNEQFWVIGGVSAHLFA+FQGLLKV+AGV+T+FTVT+KA DD EFSELY FKW Sbjct: 907 IDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVETNFTVTSKAADDGEFSELYIFKWTS 966 Query: 403 XXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQN 224 +N IGV+ GIS+AI+NGY+SWGPLFG+LFFAFWVI+HLYPFLKGLLG+Q+ Sbjct: 967 LLIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQD 1026 Query: 223 RTPTIVIV 200 R PTI++V Sbjct: 1027 RMPTIILV 1034
>CESA9_ARATH (Q9SJ22) Probable cellulose synthase A catalytic subunit 9| [UDP-forming] (EC 2.4.1.12) (AtCesA-9) Length = 1088 Score = 206 bits (523), Expect(2) = 6e-53 Identities = 91/128 (71%), Positives = 108/128 (84%) Frame = -3 Query: 583 VDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXX 404 +DDWWRNEQFWVIGGVS+HLFA+FQGLLKV+AGV T+FTVT+KA DD EFSELY FKW Sbjct: 925 IDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTS 984 Query: 403 XXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQN 224 +N +GV+ G+S+AINNGY+SWGPLFG+LFFA WVIVHLYPFLKGLLG+Q+ Sbjct: 985 LLIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQD 1044 Query: 223 RTPTIVIV 200 R PTI++V Sbjct: 1045 RVPTIILV 1052 Score = 21.6 bits (44), Expect(2) = 6e-53 Identities = 8/12 (66%), Positives = 9/12 (75%) Frame = -1 Query: 162 LWVRVNPXPRQD 127 LWVRVNP +D Sbjct: 1064 LWVRVNPFVSKD 1075
>CESA6_ARATH (Q94JQ6) Cellulose synthase A catalytic subunit 6 [UDP-forming] (EC| 2.4.1.12) (AtCesA-6) (Isoxaben resistant protein 2) (Protein PROCUSTE1) (Protein Quill) (AraxCelA) Length = 1084 Score = 205 bits (522), Expect = 7e-53 Identities = 91/128 (71%), Positives = 109/128 (85%) Frame = -3 Query: 583 VDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXX 404 +DDWWRNEQFWVIGGVSAHLFA+FQGLLKV+AGVDT+FTVT+KA DD EFS+LY FKW Sbjct: 922 IDDWWRNEQFWVIGGVSAHLFALFQGLLKVLAGVDTNFTVTSKAADDGEFSDLYLFKWTS 981 Query: 403 XXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQN 224 +N IGV+ G+S+AI+NGY+SWGPLFG+LFFA WVI+HLYPFLKGLLG+Q+ Sbjct: 982 LLIPPMTLLIINVIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQD 1041 Query: 223 RTPTIVIV 200 R PTI++V Sbjct: 1042 RMPTIIVV 1049
>CESA1_ARATH (O48946) Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC| 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) Length = 1081 Score = 204 bits (518), Expect = 2e-52 Identities = 93/130 (71%), Positives = 110/130 (84%), Gaps = 1/130 (0%) Frame = -3 Query: 586 AVDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDE-EFSELYTFKW 410 +++DWWRNEQFWVIGG SAHLFAVFQGLLKV+AG+DT+FTVT+KA D++ +F+ELY FKW Sbjct: 916 SIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKATDEDGDFAELYIFKW 975 Query: 409 XXXXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGR 230 +N IG+VAG+S A+N+GY+SWGPLFGKLFFA WVI HLYPFLKGLLGR Sbjct: 976 TALLIPPTTVLLVNLIGIVAGVSYAVNSGYQSWGPLFGKLFFALWVIAHLYPFLKGLLGR 1035 Query: 229 QNRTPTIVIV 200 QNRTPTIVIV Sbjct: 1036 QNRTPTIVIV 1045
>CESAA_ARATH (Q9SKJ5) Probable cellulose synthase A catalytic subunit 10| [UDP-forming] (EC 2.4.1.12) (AtCesA-10) (AtCesA-13) Length = 1065 Score = 202 bits (513), Expect = 8e-52 Identities = 92/130 (70%), Positives = 108/130 (83%), Gaps = 1/130 (0%) Frame = -3 Query: 586 AVDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDE-EFSELYTFKW 410 A++DWWRNEQFWVIGG SAHLFAVFQGLLKV AG+DT+FTVT+KA D++ +F+ELY FKW Sbjct: 903 ALEDWWRNEQFWVIGGTSAHLFAVFQGLLKVFAGIDTNFTVTSKASDEDGDFAELYVFKW 962 Query: 409 XXXXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGR 230 +N +G+VAG+S AIN+GY+SWGPL GKL FAFWV+ HLYPFLKGLLGR Sbjct: 963 TSLLIPPTTILLVNLVGIVAGVSYAINSGYQSWGPLMGKLLFAFWVVAHLYPFLKGLLGR 1022 Query: 229 QNRTPTIVIV 200 QNRTPTIVIV Sbjct: 1023 QNRTPTIVIV 1032
>CESA4_ARATH (Q84JA6) Cellulose synthase A catalytic subunit 4 [UDP-forming] (EC| 2.4.1.12) (AtCesA-4) (Irregular xylem protein 5) (AtIRX5) Length = 1049 Score = 200 bits (509), Expect = 2e-51 Identities = 95/131 (72%), Positives = 108/131 (82%), Gaps = 2/131 (1%) Frame = -3 Query: 586 AVDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDE--EFSELYTFK 413 +++D WRNEQFWVIGGVSAHLFAVFQGLLKV+ GVDT+FTVT+K DE EF +LY FK Sbjct: 884 SINDLWRNEQFWVIGGVSAHLFAVFQGLLKVLFGVDTNFTVTSKGASDEADEFGDLYLFK 943 Query: 412 WXXXXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLG 233 W LN +GVVAG+S+AINNGY SWGPLFGKLFFAFWVIVHLYPFLKGL+G Sbjct: 944 WTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMG 1003 Query: 232 RQNRTPTIVIV 200 RQNRTPTIV++ Sbjct: 1004 RQNRTPTIVVL 1014
>CESA2_ARATH (O48947) Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC| 2.4.1.12) (AtCesA-2) (Ath-A) Length = 1084 Score = 199 bits (505), Expect = 6e-51 Identities = 87/128 (67%), Positives = 107/128 (83%) Frame = -3 Query: 583 VDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWXX 404 +DDWWRNEQFWVIGG S+HLFA+FQGLLKV+AGV+T+FTVT+KA DD FSELY FKW Sbjct: 921 IDDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGAFSELYIFKWTT 980 Query: 403 XXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQN 224 +N IGV+ G+S+AI+NGY+SWGPLFG+LFFA WVIVHLYPFLKG+LG+Q+ Sbjct: 981 LLIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQD 1040 Query: 223 RTPTIVIV 200 + PTI++V Sbjct: 1041 KMPTIIVV 1048
>CESA8_ARATH (Q8LPK5) Cellulose synthase A catalytic subunit 8 [UDP-forming] (EC| 2.4.1.12) (AtCesA-8) (Irregular xylem protein 1) (AtIRX1) Length = 985 Score = 197 bits (501), Expect = 2e-50 Identities = 89/129 (68%), Positives = 106/129 (82%) Frame = -3 Query: 586 AVDDWWRNEQFWVIGGVSAHLFAVFQGLLKVIAGVDTSFTVTTKAGDDEEFSELYTFKWX 407 +++D WRNEQFWVIGGVSAHLFAVFQG LK++AG+DT+FTVT+K DD EF ELY KW Sbjct: 820 SIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKTADDLEFGELYIVKWT 879 Query: 406 XXXXXXXXXXXLNFIGVVAGISNAINNGYESWGPLFGKLFFAFWVIVHLYPFLKGLLGRQ 227 +N +GVVAG S+A+N GYE+WGPLFGK+FFAFWVI+HLYPFLKGL+GRQ Sbjct: 880 TLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQ 939 Query: 226 NRTPTIVIV 200 NRTPTIVI+ Sbjct: 940 NRTPTIVIL 948
>MURA_SILPO (Q5LL90) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 421 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 440 LIISGLCCDGEASVHTSYHLEKSLEH 517 LI++GL +GE V YHL++ EH Sbjct: 379 LILAGLAAEGETLVSRVYHLDRGYEH 404
>MURA_SHEON (Q8EAF7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 419 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +2 Query: 440 LIISGLCCDGEASVHTSYHLEKSLEH 517 L+I+GL DG+ V YHL++ EH Sbjct: 378 LVIAGLVADGKTIVDRIYHLDRGYEH 403
>MURA_ZYMMO (Q5NLR2) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 426 Score = 30.0 bits (66), Expect = 5.2 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +2 Query: 440 LIISGLCCDGEASVHTSYHLEKSLE 514 LII+ L +GE VH YHL++ E Sbjct: 384 LIIAALAAEGETQVHRVYHLDRGYE 408
>MURA1_RHILO (Q989E5) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (EC| 2.5.1.7) (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) Length = 430 Score = 30.0 bits (66), Expect = 5.2 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 440 LIISGLCCDGEASVHTSYHLEKSLE 514 L+I+GL +GE +V+ YHL++ E Sbjct: 388 LVIAGLAAEGETTVNRVYHLDRGFE 412
>MURA_MYCNE (O33159) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) (Fragment) Length = 113 Score = 30.0 bits (66), Expect = 5.2 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +2 Query: 440 LIISGLCCDGEASVHTSYHLEK 505 L+++GL DGE VH YH+++ Sbjct: 71 LVLAGLVADGETEVHDVYHIDR 92
>PSAB_PINKO (Q85WX0) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)| (PSI-B) Length = 734 Score = 29.6 bits (65), Expect = 6.7 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -2 Query: 491 SWCGH*LHRHNKGRR**GVF*AVHIQMDNLVDSPDHPASAELHRCGCWHL 342 +W GH +H R VH++ DN +D HP E G W+L Sbjct: 189 AWTGHLVHVAIPESR------GVHVRWDNFLDELPHPQGLEPFFTGQWNL 232
>PSAB_CYACA (Q9TLQ6) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB)| (PSI-B) Length = 734 Score = 29.6 bits (65), Expect = 6.7 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = -2 Query: 491 SWCGH*LHRHNKGRR**GVF*AVHIQMDNLVDSPDHPASAELHRCGCW 348 +WCGH +H R HI +N + +P HPA + G W Sbjct: 189 AWCGHLIHVAIPASR------GQHIGWNNFLTTPPHPAGLKPFFTGNW 230
>MURA_BURPS (Q63Q84) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 449 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 440 LIISGLCCDGEASVHTSYHLEKSLE 514 L+I+GLC GE V YHL++ + Sbjct: 404 LVIAGLCAQGETLVERIYHLDRGYD 428
>MURA_BURP1 (Q3JMZ4) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 449 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 440 LIISGLCCDGEASVHTSYHLEKSLE 514 L+I+GLC GE V YHL++ + Sbjct: 404 LVIAGLCAQGETLVERIYHLDRGYD 428
>MURA_BURMA (Q62GD7) UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC| 2.5.1.7) (Enoylpyruvate transferase) (UDP-N-acetylglucosamine enolpyruvyl transferase) (EPT) Length = 449 Score = 29.6 bits (65), Expect = 6.7 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = +2 Query: 440 LIISGLCCDGEASVHTSYHLEKSLE 514 L+I+GLC GE V YHL++ + Sbjct: 404 LVIAGLCAQGETLVERIYHLDRGYD 428
>MURA1_SYMTH (Q67Q46) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 (EC| 2.5.1.7) (Enoylpyruvate transferase 1) (UDP-N-acetylglucosamine enolpyruvyl transferase 1) (EPT 1) Length = 441 Score = 29.3 bits (64), Expect = 8.8 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%) Frame = +2 Query: 419 CVQLRK--LLIISGLCCDGEASVHTSYHLEKSLEH 517 C LR+ LI++GL +GE ++ YH+++ +H Sbjct: 392 CPALREGMALILAGLRAEGETTIEDIYHIDRGYQH 426 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,342,682 Number of Sequences: 219361 Number of extensions: 1363459 Number of successful extensions: 3115 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3049 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3111 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
