ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8m18 |
|---|---|
| Clone Library Name | barley_pub |
>PSB5A_ARATH (O23717) Proteasome subunit beta type 5-A precursor (EC 3.4.25.1)| (20S proteasome beta subunit E-1) (Proteasome epsilon-1 chain) (Proteasome component E) Length = 274 Score = 62.8 bits (151), Expect(2) = 2e-16 Identities = 27/35 (77%), Positives = 28/35 (80%) Frame = -1 Query: 476 GPDGWKKLSGDDVGELHYHYYPVQAAPVEQEMAEA 372 GP+GW KLSGDDVGELHYHYYPV A EQ M EA Sbjct: 237 GPEGWTKLSGDDVGELHYHYYPVAPATAEQVMEEA 271 Score = 42.0 bits (97), Expect(2) = 2e-16 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = -3 Query: 537 IYHATFRDGASGGCVSVYYVG 475 IYHATFRDGASGG SVY+VG Sbjct: 217 IYHATFRDGASGGVASVYHVG 237
>PSB5_SPIOL (O24361) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (20S proteasome subunit E) (Proteasome epsilon chain) Length = 272 Score = 62.0 bits (149), Expect(2) = 2e-16 Identities = 26/38 (68%), Positives = 30/38 (78%) Frame = -1 Query: 476 GPDGWKKLSGDDVGELHYHYYPVQAAPVEQEMAEAPSA 363 GPDGWKK++GDDVG+LH+ YYPV A VEQEM E A Sbjct: 235 GPDGWKKVTGDDVGDLHFQYYPVVPATVEQEMVEVVGA 272 Score = 42.4 bits (98), Expect(2) = 2e-16 Identities = 18/21 (85%), Positives = 20/21 (95%) Frame = -3 Query: 537 IYHATFRDGASGGCVSVYYVG 475 IYHAT+RDGASGG VSVY+VG Sbjct: 215 IYHATYRDGASGGVVSVYHVG 235
>PSB5B_ARATH (Q9LIP2) Proteasome subunit beta type 5-B precursor (EC 3.4.25.1)| (20S proteasome beta subunit E-2) (Proteasome epsilon-2 chain) Length = 273 Score = 58.2 bits (139), Expect(2) = 4e-15 Identities = 25/35 (71%), Positives = 25/35 (71%) Frame = -1 Query: 476 GPDGWKKLSGDDVGELHYHYYPVQAAPVEQEMAEA 372 GP GW KLSGDDVGELHYHYYPV E M EA Sbjct: 237 GPQGWTKLSGDDVGELHYHYYPVAPITAEHVMEEA 271 Score = 42.0 bits (97), Expect(2) = 4e-15 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = -3 Query: 537 IYHATFRDGASGGCVSVYYVG 475 IYHATFRDGASGG SVY+VG Sbjct: 217 IYHATFRDGASGGVASVYHVG 237
>PSB5_MOUSE (O55234) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) Length = 209 Score = 30.4 bits (67), Expect(2) = 0.024 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -3 Query: 537 IYHATFRDGASGGCVSVYYV 478 IY AT+RD SGG V++Y+V Sbjct: 164 IYQATYRDAYSGGAVNLYHV 183 Score = 26.2 bits (56), Expect(2) = 0.024 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -1 Query: 470 DGWKKLSGDDVGELHYHYYPV 408 DGW ++S D+V +LH Y V Sbjct: 186 DGWIRVSSDNVADLHDKYSSV 206
>PSB5_HUMAN (P28074) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) (Proteasome subunit MB1) Length = 208 Score = 30.4 bits (67), Expect(2) = 0.024 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -3 Query: 537 IYHATFRDGASGGCVSVYYV 478 IY AT+RD SGG V++Y+V Sbjct: 164 IYQATYRDAYSGGAVNLYHV 183 Score = 26.2 bits (56), Expect(2) = 0.024 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 470 DGWKKLSGDDVGELHYHY 417 DGW ++S D+V +LH Y Sbjct: 186 DGWIRVSSDNVADLHEKY 203
>PSB5_RAT (P28075) Proteasome subunit beta type 5 precursor (EC 3.4.25.1)| (Proteasome epsilon chain) (Macropain epsilon chain) (Multicatalytic endopeptidase complex epsilon chain) (Proteasome subunit X) (Proteasome chain 6) Length = 208 Score = 30.4 bits (67), Expect(2) = 0.031 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = -3 Query: 537 IYHATFRDGASGGCVSVYYV 478 IY AT+RD SGG V++Y+V Sbjct: 164 IYQATYRDAYSGGAVNLYHV 183 Score = 25.8 bits (55), Expect(2) = 0.031 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 470 DGWKKLSGDDVGELHYHY 417 DGW ++S D+V +LH Y Sbjct: 186 DGWIRVSSDNVADLHDKY 203
>RST4_AVESA (P50698) Thaumatin-like pathogenesis-related protein 4 precursor| Length = 169 Score = 32.3 bits (72), Expect = 0.87 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +1 Query: 343 YDINQVDAEG-ASAISCSTGAAWTG**W*CSSPTSSPDNFFQPSGPDVVDTNTATTSSIT 519 YDI+ +D A SCSTG A +S PD + QP P NT + IT Sbjct: 113 YDISVIDVYNLAMDFSCSTGDALQ------CRDSSCPDAYHQPDDPKTHSCNTNSNYQIT 166 Query: 520 EC 525 C Sbjct: 167 FC 168
>TP53B_MOUSE (P70399) Tumor suppressor p53-binding protein 1 (p53-binding protein| 1) (p53BP1) (53BP1) Length = 1957 Score = 28.9 bits (63), Expect = 9.6 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 5/82 (6%) Frame = +1 Query: 277 EEETNRPQVHKTRCFSTVHRISYDINQVDAEGA-----SAISCSTGAAWTG**W*CSSPT 441 ++ET +PQV + TV D Q+ EGA A +C++ + C S + Sbjct: 832 DQETQQPQVQEKESPVTVDAEVADDKQLGPEGACQQLEKAPACASQSF-------CESSS 884 Query: 442 SSPDNFFQPSGPDVVDTNTATT 507 +P +F P D++ T T Sbjct: 885 ETPFHFTLPKEGDIIPPLTGAT 906
>YDCC_ECOLI (P28917) H repeat-associated protein ydcC (ORF-H)| Length = 378 Score = 28.9 bits (63), Expect = 9.6 Identities = 10/35 (28%), Positives = 22/35 (62%) Frame = -1 Query: 530 MQHSVMELVVAVLVSTTSGPDGWKKLSGDDVGELH 426 M+H + ++++ + + SG +GW+ + +D GE H Sbjct: 22 MEHKLSDILLLTICAVISGAEGWEDI--EDFGETH 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 70,243,704 Number of Sequences: 219361 Number of extensions: 1335783 Number of successful extensions: 3559 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3473 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3558 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
