ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd0h07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482822.1| Oryza sativa (japonica cultivar-group), mRNA Length = 785 Score = 145 bits (73), Expect = 1e-31 Identities = 181/217 (83%) Strand = Plus / Minus Query: 125 ggcaatagcttgccattgtacatcttgtccagcagctctttggcgccaggtcgccgcagg 184 ||||||| |||||| |||||||||||||| ||||||| |||||| | |||||||| || Sbjct: 620 ggcaatatcttgccgttgtacatcttgtcgagcagcttcttggcgtctggtcgccggaga 561 Query: 185 agtcctttgttgttgggcacgccggttccgagacaaatcgggcagaccagcttcccgcgg 244 || || |||||||| |||| || ||||| ||||||| || || |||| ||||| ||| Sbjct: 560 agccccttgttgtttggcagtcctgttcctagacaaactggacacaccaatttccctcgg 501 Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 |||||||| |||||||| ||||| ||| || | ||||||||||| |||||||||||| Sbjct: 500 ccgtagcagtttgggcactctgtgaatagatagacatcttttgctctctttcggttgagg 441 Query: 305 gccttccattttcctgtgccaccacacatgtcacata 341 |||||||||||||| ||||| || ||||||||||||| Sbjct: 440 gccttccattttccagtgccgccgcacatgtcacata 404
>dbj|AK120178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013033H06, full insert sequence Length = 785 Score = 145 bits (73), Expect = 1e-31 Identities = 181/217 (83%) Strand = Plus / Minus Query: 125 ggcaatagcttgccattgtacatcttgtccagcagctctttggcgccaggtcgccgcagg 184 ||||||| |||||| |||||||||||||| ||||||| |||||| | |||||||| || Sbjct: 620 ggcaatatcttgccgttgtacatcttgtcgagcagcttcttggcgtctggtcgccggaga 561 Query: 185 agtcctttgttgttgggcacgccggttccgagacaaatcgggcagaccagcttcccgcgg 244 || || |||||||| |||| || ||||| ||||||| || || |||| ||||| ||| Sbjct: 560 agccccttgttgtttggcagtcctgttcctagacaaactggacacaccaatttccctcgg 501 Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 |||||||| |||||||| ||||| ||| || | ||||||||||| |||||||||||| Sbjct: 500 ccgtagcagtttgggcactctgtgaatagatagacatcttttgctctctttcggttgagg 441 Query: 305 gccttccattttcctgtgccaccacacatgtcacata 341 |||||||||||||| ||||| || ||||||||||||| Sbjct: 440 gccttccattttccagtgccgccgcacatgtcacata 404
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 83.8 bits (42), Expect = 4e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 |||||||| |||||||| ||||| ||| || | ||||||||||| |||||||||||| Sbjct: 22767399 ccgtagcagtttgggcactctgtgaatagatagacatcttttgctctctttcggttgagg 22767340 Query: 305 gccttccattttcctgtgccaccacacatgtcac 338 |||||||||||||| ||||| || |||||||||| Sbjct: 22767339 gccttccattttccagtgccgccgcacatgtcac 22767306 Score = 65.9 bits (33), Expect = 9e-08 Identities = 81/97 (83%) Strand = Plus / Minus Query: 125 ggcaatagcttgccattgtacatcttgtccagcagctctttggcgccaggtcgccgcagg 184 ||||||| |||||| |||||||||||||| ||||||| |||||| | |||||||| || Sbjct: 22767638 ggcaatatcttgccgttgtacatcttgtcgagcagcttcttggcgtctggtcgccggaga 22767579 Query: 185 agtcctttgttgttgggcacgccggttccgagacaaa 221 || || |||||||| |||| || ||||| ||||||| Sbjct: 22767578 agccccttgttgtttggcagtcctgttcctagacaaa 22767542
>dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1116H04 Length = 140142 Score = 83.8 bits (42), Expect = 4e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 |||||||| |||||||| ||||| ||| || | ||||||||||| |||||||||||| Sbjct: 94041 ccgtagcagtttgggcactctgtgaatagatagacatcttttgctctctttcggttgagg 93982 Query: 305 gccttccattttcctgtgccaccacacatgtcac 338 |||||||||||||| ||||| || |||||||||| Sbjct: 93981 gccttccattttccagtgccgccgcacatgtcac 93948 Score = 65.9 bits (33), Expect = 9e-08 Identities = 81/97 (83%) Strand = Plus / Minus Query: 125 ggcaatagcttgccattgtacatcttgtccagcagctctttggcgccaggtcgccgcagg 184 ||||||| |||||| |||||||||||||| ||||||| |||||| | |||||||| || Sbjct: 94280 ggcaatatcttgccgttgtacatcttgtcgagcagcttcttggcgtctggtcgccggaga 94221 Query: 185 agtcctttgttgttgggcacgccggttccgagacaaa 221 || || |||||||| |||| || ||||| ||||||| Sbjct: 94220 agccccttgttgtttggcagtcctgttcctagacaaa 94184
>dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1111C03 Length = 144879 Score = 83.8 bits (42), Expect = 4e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 |||||||| |||||||| ||||| ||| || | ||||||||||| |||||||||||| Sbjct: 136193 ccgtagcagtttgggcactctgtgaatagatagacatcttttgctctctttcggttgagg 136134 Query: 305 gccttccattttcctgtgccaccacacatgtcac 338 |||||||||||||| ||||| || |||||||||| Sbjct: 136133 gccttccattttccagtgccgccgcacatgtcac 136100 Score = 65.9 bits (33), Expect = 9e-08 Identities = 81/97 (83%) Strand = Plus / Minus Query: 125 ggcaatagcttgccattgtacatcttgtccagcagctctttggcgccaggtcgccgcagg 184 ||||||| |||||| |||||||||||||| ||||||| |||||| | |||||||| || Sbjct: 136432 ggcaatatcttgccgttgtacatcttgtcgagcagcttcttggcgtctggtcgccggaga 136373 Query: 185 agtcctttgttgttgggcacgccggttccgagacaaa 221 || || |||||||| |||| || ||||| ||||||| Sbjct: 136372 agccccttgttgtttggcagtcctgttcctagacaaa 136336
>gb|AC146329.19| Medicago truncatula clone mth2-5i21, complete sequence Length = 142834 Score = 79.8 bits (40), Expect = 6e-12 Identities = 76/88 (86%) Strand = Plus / Minus Query: 251 caatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgagagccttc 310 ||||| || ||||| |||||||| |||| ||||| ||||||||| | ||| ||||| ||| Sbjct: 17540 caattaggacattcagtaaattcataaacatcttgtgctcgcttcctgttaagagctttc 17481 Query: 311 cattttcctgtgccaccacacatgtcac 338 ||||||||||| ||||||||||| |||| Sbjct: 17480 cattttcctgtaccaccacacatatcac 17453
>ref|NM_129039.2| Arabidopsis thaliana unknown protein AT2G34860 mRNA, complete cds Length = 844 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 ||||| || ||||| ||||| ||||| || || | |||||| || || |||||||||||| Sbjct: 443 ccgtaacagtttggacattccgtaaactcatatacatctttcgcacgttttcggttgaga 384 Query: 305 gccttccattttcctgtgccaccacacatgtcaca 339 || |||||||||||||| ||||||||||| ||||| Sbjct: 383 gctttccattttcctgtaccaccacacatatcaca 349
>gb|AY128851.1| Arabidopsis thaliana unknown protein (At2g34860) mRNA, complete cds Length = 713 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 ||||| || ||||| ||||| ||||| || || | |||||| || || |||||||||||| Sbjct: 431 ccgtaacagtttggacattccgtaaactcatatacatctttcgcacgttttcggttgaga 372 Query: 305 gccttccattttcctgtgccaccacacatgtcaca 339 || |||||||||||||| ||||||||||| ||||| Sbjct: 371 gctttccattttcctgtaccaccacacatatcaca 337
>gb|AY099664.1| Arabidopsis thaliana unknown protein (At2g34860) mRNA, complete cds Length = 844 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 ||||| || ||||| ||||| ||||| || || | |||||| || || |||||||||||| Sbjct: 443 ccgtaacagtttggacattccgtaaactcatatacatctttcgcacgttttcggttgaga 384 Query: 305 gccttccattttcctgtgccaccacacatgtcaca 339 || |||||||||||||| ||||||||||| ||||| Sbjct: 383 gctttccattttcctgtaccaccacacatatcaca 349
>emb|BX818959.1|CNS0A90I Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB31ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 771 Score = 77.8 bits (39), Expect = 2e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 ||||| || ||||| ||||| ||||| || || | |||||| || || |||||||||||| Sbjct: 424 ccgtaacagtttggacattccgtaaactcatatacatctttcgcacgttttcggttgaga 365 Query: 305 gccttccattttcctgtgccaccacacatgtcaca 339 || |||||||||||||| ||||||||||| ||||| Sbjct: 364 gctttccattttcctgtaccaccacacatatcaca 330
>gb|AC004238.3| Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence Length = 108484 Score = 75.8 bits (38), Expect = 9e-11 Identities = 80/94 (85%) Strand = Plus / Minus Query: 245 ccgtagcaatttgggcattctgtaaattcgtaaatatcttttgctcgctttcggttgaga 304 ||||| || ||||| ||||| ||||| || || | |||||| || || |||||||||||| Sbjct: 38261 ccgtaacagtttggacattccgtaaactcatatacatctttcgcacgttttcggttgaga 38202 Query: 305 gccttccattttcctgtgccaccacacatgtcac 338 || |||||||||||||| ||||||||||| |||| Sbjct: 38201 gctttccattttcctgtaccaccacacatatcac 38168
>gb|AY675585.1| Thellungiella halophila ClpP5 protease-like mRNA, complete sequence Length = 1042 Score = 48.1 bits (24), Expect = 0.020 Identities = 30/32 (93%) Strand = Plus / Minus Query: 308 ttccattttcctgtgccaccacacatgtcaca 339 |||||||||||||| ||||||||||| ||||| Sbjct: 565 ttccattttcctgtaccaccacacatatcaca 534
>gb|AC117197.3| Mus musculus BAC clone RP23-127A21 from 16, complete sequence Length = 211410 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 308 ttccattttcctgtgccacca 328 ||||||||||||||||||||| Sbjct: 45505 ttccattttcctgtgccacca 45525
>dbj|AP000426.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1107E3 Length = 239116 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 23 aattgcagtattattacaccgtcgc 47 ||||||||||||||| ||||||||| Sbjct: 54045 aattgcagtattatttcaccgtcgc 54021
>ref|XM_513230.1| PREDICTED: Pan troglodytes LOC456659 (LOC456659), mRNA Length = 5019 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 agagccttccattttcctgt 321 |||||||||||||||||||| Sbjct: 4356 agagccttccattttcctgt 4375
>emb|AL451139.40| Human DNA sequence from clone RP11-569G9 on chromosome 1 Contains the 3' end of a novel gene (DKFZP434L0117), the SH3BGRL3 gene for SH3 domain binding glutamic acid-rich protein like 3, the gene for socius (SOC), the CDW52 gene for CDW52 antigen (CAMPATH-1 antigen), the AIM1L gene for absent in melanoma 1-like and a novel gene,, complete sequence Length = 145736 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 agagccttccattttcctgt 321 |||||||||||||||||||| Sbjct: 65266 agagccttccattttcctgt 65247
>dbj|AK095339.1| Homo sapiens cDNA FLJ38020 fis, clone CTONG2012843, weakly similar to Human non-lens beta gamma-crystallin like protein (AIM1) mRNA Length = 2289 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 agagccttccattttcctgt 321 |||||||||||||||||||| Sbjct: 1517 agagccttccattttcctgt 1536
>ref|NM_001039775.1| Homo sapiens similar to absent in melanoma 1 (FLJ38020), mRNA Length = 2289 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 agagccttccattttcctgt 321 |||||||||||||||||||| Sbjct: 1517 agagccttccattttcctgt 1536
>gb|AC107392.6| Homo sapiens BAC clone RP11-578K15 from 4, complete sequence Length = 93331 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 tctaatacgcatctcaaatt 26 |||||||||||||||||||| Sbjct: 70523 tctaatacgcatctcaaatt 70542
>gb|AC149890.2| Xenopus tropicalis clone ISB-181I24, complete sequence Length = 87937 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 cttctgctttcaagagctgg 73 |||||||||||||||||||| Sbjct: 57705 cttctgctttcaagagctgg 57724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,055,422 Number of Sequences: 3902068 Number of extensions: 3055422 Number of successful extensions: 54871 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54811 Number of HSP's gapped (non-prelim): 58 length of query: 369 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 347 effective length of database: 17,147,199,772 effective search space: 5950078320884 effective search space used: 5950078320884 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
