ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd0a02 |
|---|---|
| Clone Library Name | barley_pub |
>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 393 Score = 149 bits (376), Expect(2) = 1e-53 Identities = 74/84 (88%), Positives = 79/84 (94%), Gaps = 2/84 (2%) Frame = -3 Query: 440 KAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGK 261 +AYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF ENVESGHPLVKEGK Sbjct: 312 EAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVESGHPLVKEGK 369 Query: 260 LANLLAWRAEEDSLEE--GAVLCE 195 LANLLAWRAEE+SLEE GA+LCE Sbjct: 370 LANLLAWRAEEESLEEGTGALLCE 393 Score = 80.1 bits (196), Expect(2) = 1e-53 Identities = 37/38 (97%), Positives = 38/38 (100%) Frame = -2 Query: 552 NIVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDAE 439 +IVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDAE Sbjct: 275 DIVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDAE 312
>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 400 Score = 98.2 bits (243), Expect(2) = 3e-36 Identities = 49/79 (62%), Positives = 60/79 (75%), Gaps = 1/79 (1%) Frame = -3 Query: 440 KAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG-HPLVKEG 264 + YDCNN+VEQELP GG+L+YQSF A E+ A SP+SVFHCF+GENVES P+ K+ Sbjct: 319 EVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESAPPPMKKDY 376 Query: 263 KLANLLAWRAEEDSLEEGA 207 KLANLL W E D++EE A Sbjct: 377 KLANLLCWEEEADAMEEKA 395 Score = 73.6 bits (179), Expect(2) = 3e-36 Identities = 34/41 (82%), Positives = 36/41 (87%) Frame = -2 Query: 561 STANIVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDAE 439 S ++VKRVLRCFGPSEFSVAVTIFGGRGHA TWGK L AE Sbjct: 279 SYGDLVKRVLRCFGPSEFSVAVTIFGGRGHAGTWGKALGAE 319
>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 398 Score = 102 bits (253), Expect(2) = 3e-36 Identities = 51/75 (68%), Positives = 59/75 (78%) Frame = -3 Query: 437 AYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGKL 258 AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ + P VKEGKL Sbjct: 320 AYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKEGKL 378 Query: 257 ANLLAWRAEEDSLEE 213 NLL W ED+LEE Sbjct: 379 GNLLPW--GEDALEE 391 Score = 69.3 bits (168), Expect(2) = 3e-36 Identities = 30/41 (73%), Positives = 36/41 (87%) Frame = -2 Query: 552 NIVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDAEGIR 430 ++VKRVLRCFGPSEFSVAVTIFGG GHA TW K+L+A+ + Sbjct: 282 DLVKRVLRCFGPSEFSVAVTIFGGHGHAGTWAKELNADAYK 322
>DCAM_IPONI (Q96471) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 32.3 bits (72), Expect(2) = 5e-04 Identities = 16/36 (44%), Positives = 24/36 (66%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDA 442 +++RVL CF P+EFSVA+ H + G+KLD+ Sbjct: 274 LIQRVLSCFQPAEFSVAL-------HCDSIGEKLDS 302 Score = 30.0 bits (66), Expect(2) = 5e-04 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = -3 Query: 440 KAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGEN 297 K Y C + L GG ++Y FT+ S GSPRS C EN Sbjct: 309 KGYACGERSYEALGKGGSIMYCGFTSTG----SCGSPRSTLLCCWSEN 352
>DCAM_DATST (Q96555) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 28.9 bits (63), Expect(2) = 0.18 Identities = 11/18 (61%), Positives = 16/18 (88%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAV 496 +V+RVL CF P+EFS+A+ Sbjct: 276 LVERVLACFEPAEFSIAL 293 Score = 24.6 bits (52), Expect(2) = 0.18 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Frame = -3 Query: 440 KAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFH-CFEGENVE 291 K Y +E GG ++YQ FT A SP+SV C++ E E Sbjct: 311 KGYSLAEWSPEEFGKGGSIVYQKFTKTPYCA----SPKSVLKGCWKEEEEE 357
>DCAM_TOBAC (O04009) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 28.5 bits (62), Expect(2) = 0.31 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAV 496 +V+RVL CF P EFS+A+ Sbjct: 276 LVERVLACFEPDEFSIAL 293 Score = 24.3 bits (51), Expect(2) = 0.31 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = -3 Query: 440 KAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSV 321 K Y +E GG ++YQ FT GSP+SV Sbjct: 311 KGYSLAEWSPEEFGKGGSIVYQKFTRTP----FCGSPKSV 346
>DCAM_NICSY (O80402) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 28.5 bits (62), Expect(2) = 0.31 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAV 496 +V+RVL CF P EFS+A+ Sbjct: 276 LVERVLACFEPDEFSIAL 293 Score = 24.3 bits (51), Expect(2) = 0.31 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = -3 Query: 440 KAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSV 321 K Y +E GG ++YQ FT GSP+SV Sbjct: 311 KGYSLAEWSPEEFGKGGSIVYQKFTRTP----FCGSPKSV 346
>DCAM_VICFA (Q9M4D8) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 33.1 bits (74), Expect = 0.55 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -3 Query: 440 KAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 291 K Y C+ Q L G ++YQ F A GSPRS C++ E+ E Sbjct: 307 KGYCCDEKSHQGLGMSGSVVYQKFVK----ASDCGSPRSTLKCWKDEDEE 352 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDAEGIRLQQ--HRGAG 406 +V RVL CF P+EFSVAV + + G LD +G + H+G G Sbjct: 272 MVMRVLACFQPTEFSVAVHV-DNASKSFEQGCLLDVKGYCCDEKSHQGLG 320
>DCAM_SOLTU (Q04694) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) (Induced stolen tip protein TUB13) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 360 Score = 29.3 bits (64), Expect(2) = 0.65 Identities = 12/18 (66%), Positives = 16/18 (88%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAV 496 +V+RVL CF P+EFSVA+ Sbjct: 276 LVERVLACFEPAEFSVAL 293 Score = 22.3 bits (46), Expect(2) = 0.65 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Frame = -3 Query: 440 KAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFH-CFEGENVE 291 K Y +E GG ++YQ FT SP+SV C++ E E Sbjct: 311 KGYSLAEWSPEEFGEGGSIVYQKFTRTP----YCESPKSVLKGCWKEEEKE 357
>DCAM_IPOBA (Q9M6K1) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 362 Score = 32.3 bits (72), Expect = 0.94 Identities = 16/36 (44%), Positives = 24/36 (66%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDA 442 +++RVL CF P+EFSVA+ H + G+KLD+ Sbjct: 274 LIQRVLSCFQPAEFSVAL-------HCDSIGEKLDS 302
>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 353 Score = 31.6 bits (70), Expect = 1.6 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDAEGIRLQQ--HRGAG 406 +V RVL CF P+EFSVAV + + G LD +G ++ H+G G Sbjct: 272 MVMRVLACFQPTEFSVAVHV-DNASKSFEQGCLLDVKGYCCEEKSHQGLG 320 Score = 30.8 bits (68), Expect = 2.7 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = -3 Query: 440 KAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVE 291 K Y C Q L G ++YQ F GSPRS C++ E+ E Sbjct: 307 KGYCCEEKSHQGLGMSGSVVYQKFLKTS----YCGSPRSTLKCWKDEDEE 352
>DCAM1_DIACA (Q39676) S-adenosylmethionine decarboxylase proenzyme 1 (EC| 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contains: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] Length = 381 Score = 31.2 bits (69), Expect = 2.1 Identities = 12/20 (60%), Positives = 17/20 (85%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAVTI 490 +V+RVL CF P EFS+AV++ Sbjct: 295 LVERVLNCFQPREFSIAVSV 314
>DCAM_CATRO (Q42679) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 357 Score = 30.8 bits (68), Expect = 2.7 Identities = 13/18 (72%), Positives = 16/18 (88%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAV 496 +++RVL CF PSEFSVAV Sbjct: 274 MIERVLACFQPSEFSVAV 291
>DCAM_SPIOL (P46255) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 363 Score = 30.8 bits (68), Expect = 2.7 Identities = 12/18 (66%), Positives = 16/18 (88%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAV 496 +V+RVL CF PSEFS+A+ Sbjct: 272 LVERVLACFEPSEFSIAI 289
>DCAM1_BRAJU (Q42613) S-adenosylmethionine decarboxylase proenzyme 1 (EC| 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contains: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] Length = 368 Score = 30.0 bits (66), Expect = 4.6 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = -2 Query: 555 ANIVKRVLRCFGPSEFSVAVTIFGGRGHAATWGKKLDAEGI 433 + +V RVL CF P +FSVAV H++ K D G+ Sbjct: 272 SQLVSRVLTCFEPKQFSVAV-------HSSVAQKSYDHSGL 305
>DCAM_HELAN (O65354) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 30.0 bits (66), Expect = 4.6 Identities = 12/18 (66%), Positives = 16/18 (88%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAV 496 +++RVL CF PSEFSVA+ Sbjct: 274 LIERVLACFEPSEFSVAL 291
>DCAM2_DIACA (Q39677) S-adenosylmethionine decarboxylase proenzyme 2 (EC| 4.1.1.50) (AdoMetDC 2) (SamDC 2) [Contains: S-adenosylmethionine decarboxylase 2 alpha chain; S-adenosylmethionine decarboxylase 2 beta chain] Length = 377 Score = 29.6 bits (65), Expect = 6.1 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -2 Query: 549 IVKRVLRCFGPSEFSVAV 496 +V+RVL CF P EFS+AV Sbjct: 286 LVERVLACFEPKEFSIAV 303
>RW1_HUMAN (Q92545) RW1 protein (Fragment)| Length = 1805 Score = 29.3 bits (64), Expect = 7.9 Identities = 23/90 (25%), Positives = 31/90 (34%) Frame = +1 Query: 283 WPLSTFSPSKQWKTDLGDPAETATSSFAVKLW*MRTPPQGSSCSTMLLQSYAFGVELLAP 462 W PS W G P TATS T P SS + L S + P Sbjct: 1688 WESPATDPSPSWPASSGSPTHTATSVLGNTSGLWSTTPFSSSIWSSNLSS---ALPFTTP 1744 Query: 463 GGGVAAATEDGDRHREL*RAEAPENPLDDV 552 +A+ G + A + +P DD+ Sbjct: 1745 ANTLASIGLMGTENSPAPHAPSTSSPADDL 1774 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,375,072 Number of Sequences: 219361 Number of extensions: 1336141 Number of successful extensions: 4008 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3899 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4003 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4585734400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
