>RNFB_VIBPA (Q87MX3) Electron transport complex protein rnfB|
          Length = 198

 Score = 35.4 bits (80), Expect = 0.035
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
 Frame = -3

Query: 163 GTKLLHTILFDPT---------CPTICIELVLFLDKLWSWRW*KYAVWVHTSTCCTTHAA 11
           GTK +HT++ D           CPT CIE++       SW+W   A+ V   T   + AA
Sbjct: 132 GTKAVHTVIKDECTGCDLCVAPCPTDCIEMIPVETTTDSWKWQLNAIPVVNITDAASDAA 191

Query: 10  N 8
           N
Sbjct: 192 N 192

>RNFB_VIBVY (Q7MM82) Electron transport complex protein rnfB|
          Length = 198

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
 Frame = -3

Query: 163 GTKLLHTILFDPT---------CPTICIELVLFLDKLWSWRW 65
           GTK LHT++ D           CPT CIE++       +W+W
Sbjct: 132 GTKALHTVIKDECTGCDLCVAPCPTDCIEMIPLETTTETWKW 173

>RNFB_VIBVU (Q8D889) Electron transport complex protein rnfB|
          Length = 198

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
 Frame = -3

Query: 163 GTKLLHTILFDPT---------CPTICIELVLFLDKLWSWRW 65
           GTK LHT++ D           CPT CIE++       +W+W
Sbjct: 132 GTKALHTVIKDECTGCDLCVAPCPTDCIEMIPLETTTETWKW 173

>SNCAP_HUMAN (Q9Y6H5) Synphilin-1 (Alpha-synuclein-interacting protein)|
          Length = 919

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +2

Query: 5   CVGGMCCTTSRGMYPYCILSPPPTPKL------VQEKHKLDT 112
           C  G   ++S  M P+C+LSP  +P L      + ++HKL T
Sbjct: 192 CSTGSSESSSSNMAPFCVLSPVKSPHLRKASAVIHDQHKLST 233

>PMT1_CANAL (O74189) Dolichyl-phosphate-mannose--protein mannosyltransferase 1|
           (EC 2.4.1.109)
          Length = 877

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 15/82 (18%)
 Frame = -1

Query: 273 KMPTQTYREYMYDMYALAWETDVILCLLPT*GSKVRPELSYYIQFCLI------------ 130
           K P  T   +M    AL     VILC L    S VRP ++Y   F LI            
Sbjct: 143 KFPDSTPYIFMRQFPALLGVGTVILCYLTLRQSGVRPIIAYITTFLLIIENSNVTISRYI 202

Query: 129 ---QPARQFVSSLCFSWTSFGV 73
               P   F+++  ++W  F +
Sbjct: 203 LLDSPLIFFIAAAIYAWKKFEI 224

>RNFB_PASMU (Q9CNP1) Electron transport complex protein rnfB|
          Length = 198

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
 Frame = -3

Query: 157 KLLHTILFD---------PTCPTICIELVLFLDKLWSWRW 65
           K +HTI+ D         P CPT CI ++     + +W W
Sbjct: 135 KAMHTIIPDLCTGCELCVPPCPTDCISMIKVESTIHNWNW 174

>RNFB_YERPE (Q8ZEC9) Electron transport complex protein rnfB|
          Length = 188

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
 Frame = -3

Query: 160 TKLLHTILFD---------PTCPTICIELVLFLDKLWSWRW 65
           T+ +HT+L D           CPT CIE++       +W+W
Sbjct: 136 TRAMHTVLSDLCTGCDLCVAPCPTDCIEMIPVATTTANWKW 176

>MSHR_MOUSE (Q01727) Melanocyte-stimulating hormone receptor (MSH-R)|
           (Melanotropin receptor) (Melanocortin receptor 1)
           (MC1-R)
          Length = 315

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 208 ISFPCQGVHIIHILSVCLCGHLPLCPVLFPGLCREHLLVLL 330
           I F C G   +H+L + LC   P C  +F       LL++L
Sbjct: 247 IFFLCWGPFFLHLLLIVLCPQHPTCSCIFKNFNLFLLLIVL 287

>ATL4E_ARATH (Q9SN28) RING-H2 finger protein ATL4E|
          Length = 236

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 201 RLHQFPMPGRTYHTYTLCMSVWASSLMSCPFSR 299
           +L Q P  G T+H    C+ +W +S  +CP  R
Sbjct: 123 KLQQMPSCGHTFHME--CIDLWLTSHTTCPLCR 153

>YC8A_METJA (P81318) Hypothetical protein MJ1282.1|
          Length = 254

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 278 YVLSFFQVYVVSIFLYSLNVPGNG 349
           + LSF   Y++ IFLY LN  G G
Sbjct: 92  FALSFLVFYLIGIFLYYLNFMGGG 115

>ATL4F_ARATH (Q9SN27) RING-H2 finger protein ATL4F|
          Length = 225

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 201 RLHQFPMPGRTYHTYTLCMSVWASSLMSCPFSR 299
           +L Q P  G T+H    C+ +W +S  +CP  R
Sbjct: 109 KLQQMPSCGHTFHME--CIDLWLTSHTTCPLCR 139

>UNC33_CAEEL (Q01630) Uncoordinated protein 33 (Protein unc-33)|
          Length = 854

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 244 ILSVCLCGHLPLCPVLFPGLCREHLLVLLERARERGNLA 360
           +  VC+ G+L  CP+    +     L  +E+AR  G LA
Sbjct: 542 VSGVCVLGNLASCPISIVQVSSADSLAAIEKARASGALA 580

>RNFB_HAEDU (Q7VNT5) Electron transport complex protein rnfB|
          Length = 207

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 9/40 (22%)
 Frame = -3

Query: 157 KLLHTILFD---------PTCPTICIELVLFLDKLWSWRW 65
           K +HT++ D           CPT CIE++       SW W
Sbjct: 136 KAMHTVVADLCTGCELCVAPCPTNCIEMIKVKQNPRSWNW 175

>RNFB_VIBCH (Q9KT87) Electron transport complex protein rnfB|
          Length = 195

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
 Frame = -3

Query: 163 GTKLLHTILFDPT---------CPTICIELVLFLDKLWSWRW 65
           G K +HT++ +           CPT CIE++       SW+W
Sbjct: 132 GNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPVQTTPESWKW 173

>NU2M_ARATH (O05000) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 2)
          Length = 499

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 206 TSVSHARAYISYIYSLYVCVGIFPYVLSFFQVYVVSIFLYSL 331
           T V    AY S  +  Y+C+G     +   Q  ++ IF+Y+L
Sbjct: 313 TKVKRLLAYSSIGHVGYICIGFSCGTIEGIQSLLIGIFIYAL 354

>EPHB3_XENLA (Q91735) Ephrin type-B receptor 3 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor TCK)
          Length = 974

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 182 QVGNKHKITSVSHARAYISYIYSLYVCVGI---FPYVLSFFQVYVVS 313
           Q+G   ++ SVSH +A+  Y + +    G+    P++ ++F V + +
Sbjct: 377 QLGVTQRLVSVSHLQAHTKYSFEIQAVNGVSGKSPHIPNYFTVNITT 423


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,421,997
Number of Sequences: 219361
Number of extensions: 1296482
Number of successful extensions: 3710
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3710
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)