ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41n24 |
|---|---|
| Clone Library Name | barley_pub |
>THF1_ORYSA (Q84PB7) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 287 Score = 125 bits (313), Expect(2) = 5e-52 Identities = 65/95 (68%), Positives = 71/95 (74%) Frame = -1 Query: 498 YSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQAXXXXX 319 YSRFFAVGLFRLLEL+NATEPT+LDKLCAALNINK+SVDRDLDVYRN+LSKLVQA Sbjct: 193 YSRFFAVGLFRLLELANATEPTILDKLCAALNINKRSVDRDLDVYRNILSKLVQAKELLK 252 Query: 318 XXXXXXXXXXXXXXETPKPNEAVAKFDGSTYPLKH 214 ETPK NEAV KFDGS ++H Sbjct: 253 EYVEREKKKREERSETPKSNEAVTKFDGSLNSMRH 287 Score = 99.8 bits (247), Expect(2) = 5e-52 Identities = 47/52 (90%), Positives = 51/52 (98%) Frame = -3 Query: 658 EDPEQYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNF 503 EDPEQYRADAQ+MEEWARSQNGN LVEFSS+DGEIE+ILKDISERAQGKG+F Sbjct: 140 EDPEQYRADAQKMEEWARSQNGNSLVEFSSKDGEIEAILKDISERAQGKGSF 191
>THF1_ARATH (Q9SKT0) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 300 Score = 108 bits (270), Expect(2) = 8e-39 Identities = 58/95 (61%), Positives = 67/95 (70%) Frame = -1 Query: 513 RETSGYSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 334 +E YSRFFAVGLFRLLEL++AT+PTVLDKLCA+LNINKKSVDRDLDVYRNLLSKLVQA Sbjct: 194 KEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNINKKSVDRDLDVYRNLLSKLVQA 253 Query: 333 XXXXXXXXXXXXXXXXXXXETPKPNEAVAKFDGST 229 ++ K NE ++K G T Sbjct: 254 KELLKEYVEREKKKQGERAQSQKANETISKCLGDT 288 Score = 72.0 bits (175), Expect(2) = 8e-39 Identities = 33/52 (63%), Positives = 42/52 (80%) Frame = -3 Query: 658 EDPEQYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNF 503 EDP+QYR DAQ+MEEWARSQ LV+FSS++G+IE++LKDI+ RA K F Sbjct: 146 EDPKQYRIDAQKMEEWARSQTSASLVDFSSKEGDIEAVLKDIAGRAGSKEGF 197
>THF1_SOLTU (Q7XAB8) Protein THYLAKOID FORMATION1, chloroplast precursor| Length = 293 Score = 100 bits (249), Expect(2) = 8e-39 Identities = 48/55 (87%), Positives = 53/55 (96%) Frame = -1 Query: 498 YSRFFAVGLFRLLELSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLVQA 334 YSR FAVGLFRLLEL+N T+PT+L+KLCAALN+NKKSVDRDLDVYRNLLSKLVQA Sbjct: 200 YSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKKSVDRDLDVYRNLLSKLVQA 254 Score = 80.1 bits (196), Expect(2) = 8e-39 Identities = 36/52 (69%), Positives = 45/52 (86%) Frame = -3 Query: 658 EDPEQYRADAQRMEEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNF 503 EDPEQYRADAQ++EEWAR+QN N LV+FSS++GEIE+I KDI++RA K F Sbjct: 147 EDPEQYRADAQKLEEWARTQNANTLVDFSSKEGEIENIFKDIAQRAGTKDGF 198
>THF1_ANASP (Q8YZ41) Protein thf1| Length = 233 Score = 43.9 bits (102), Expect(2) = 1e-06 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = -1 Query: 498 YSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLV 340 YSR FA+GLF LLE SN L + A L+++ +DL++YR+ L K+ Sbjct: 141 YSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLSDDKFSKDLELYRSNLDKMT 200 Query: 339 QA 334 QA Sbjct: 201 QA 202 Score = 28.1 bits (61), Expect(2) = 1e-06 Identities = 16/55 (29%), Positives = 33/55 (60%), Gaps = 6/55 (10%) Frame = -3 Query: 658 EDPEQYRADAQRMEEWARSQNGNLLVEFSS------RDGEIESILKDISERAQGK 512 ++P++YR DA+R++ A+S N LV + S +D ++++ L+ I+ + K Sbjct: 86 QEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDADLQAQLQAIANNSNFK 140
>THF1_ANAVT (Q3M4B2) Protein thf1| Length = 233 Score = 44.3 bits (103), Expect(2) = 2e-06 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%) Frame = -1 Query: 498 YSRFFAVGLFRLLELSN-------ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKLV 340 YSR FA+GLF LLE SN L + A L+++ + +DL++YR+ L K+ Sbjct: 141 YSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLSDDKLSKDLELYRSNLDKMT 200 Query: 339 QA 334 QA Sbjct: 201 QA 202 Score = 26.9 bits (58), Expect(2) = 2e-06 Identities = 12/36 (33%), Positives = 24/36 (66%) Frame = -3 Query: 658 EDPEQYRADAQRMEEWARSQNGNLLVEFSSRDGEIE 551 ++P++YR DA+R++ A+S N LV + S+ ++ Sbjct: 86 QEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQ 121
>THF1_SYNP7 (Q31MY4) Protein thf1| Length = 254 Score = 38.1 bits (87), Expect(2) = 0.001 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = -1 Query: 498 YSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSKLV 340 YSR FA+GLF LLE + +P L A+ ++ + +DLD+YR+ L K+ Sbjct: 142 YSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEKME 201 Query: 339 QA 334 QA Sbjct: 202 QA 203 Score = 23.9 bits (50), Expect(2) = 0.001 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -3 Query: 658 EDPEQYRADAQRMEEWARSQNGNLLVEFSSRD---GEIESILKDISERAQGKGNFR 500 ++PEQYR DA + E R + + ++ + G +++ + G+ F+ Sbjct: 86 QNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAPELVRSSFQAIAGRSEFK 141
>THF1_SYNP6 (Q5N664) Protein thf1| Length = 254 Score = 38.1 bits (87), Expect(2) = 0.001 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 7/62 (11%) Frame = -1 Query: 498 YSRFFAVGLFRLLELSN---ATEPTVLDKLCAAL----NINKKSVDRDLDVYRNLLSKLV 340 YSR FA+GLF LLE + +P L A+ ++ + +DLD+YR+ L K+ Sbjct: 142 YSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSDKLQKDLDLYRSNLEKME 201 Query: 339 QA 334 QA Sbjct: 202 QA 203 Score = 23.9 bits (50), Expect(2) = 0.001 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -3 Query: 658 EDPEQYRADAQRMEEWARSQNGNLLVEFSSRD---GEIESILKDISERAQGKGNFR 500 ++PEQYR DA + E R + + ++ + G +++ + G+ F+ Sbjct: 86 QNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAPELVRSSFQAIAGRSEFK 141
>THF1_SYNEL (Q8DJT8) Protein thf1| Length = 222 Score = 38.1 bits (87), Expect = 0.023 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Frame = -1 Query: 516 VRETSGYSRFFAVGLFRLLELSNATEPTV-----LDKLCAALNINKKSVDRDLDVYRNLL 352 + T YSR AVGL+ L+ A E T+ LD+L + + + V RDL++YR+ L Sbjct: 125 LNHTGKYSRLHAVGLYAFLQ-ELAGEVTIHLNETLDQLAPVIPLPIEKVKRDLELYRSNL 183 Query: 351 SKLVQA 334 K+ QA Sbjct: 184 DKINQA 189
>THF1_PROMM (Q7V7R3) Protein thf1| Length = 243 Score = 37.0 bits (84), Expect = 0.052 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 12/73 (16%) Frame = -1 Query: 516 VRETSG-----YSRFFAVGLFRLLELSNATEPT-------VLDKLCAALNINKKSVDRDL 373 +R T+G YSR AVGL LL + E + + +L ++ +K V++DL Sbjct: 129 LRNTAGSTTFHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVGFSKARVEKDL 188 Query: 372 DVYRNLLSKLVQA 334 ++Y++ L K+ QA Sbjct: 189 NLYKSNLEKMAQA 201
>THF1_SYNY3 (P73956) Protein thf1| Length = 240 Score = 35.4 bits (80), Expect = 0.15 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Frame = -1 Query: 525 GPRVRETSGYSRFFAVGLFRLL-----ELSNATEPT--VLDKLCAALNINKKSVDRDLDV 367 G R YSR FA+GL+ LL E+ + E L +L L+++ V +DLD+ Sbjct: 131 GIHQRHKFKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVVKDLDL 190 Query: 366 YRNLLSKLVQ 337 YR+ L K+ Q Sbjct: 191 YRSNLEKVDQ 200
>THF1_GLOVI (Q7NKS7) Protein thf1| Length = 228 Score = 33.9 bits (76), Expect = 0.44 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 7/59 (11%) Frame = -1 Query: 498 YSRFFAVGLFRLLE-------LSNATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKL 343 YSR F++GL +LE +S L ++C L ++ V RDLD + ++L ++ Sbjct: 143 YSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDYNRVKRDLDFFHSVLERI 201
>THF1_SYNS9 (Q3AY05) Protein thf1| Length = 215 Score = 33.5 bits (75), Expect = 0.58 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%) Frame = -1 Query: 525 GPRVRETSGYSRFFAVGLFRLLE--LSNATEPTVLD------KLCAALNINKKSVDRDLD 370 G ++ E S YSR A+G+ RL E +A +P D +L ALN + V++DL Sbjct: 116 GQKLGEGSHYSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKELSTALNFPAERVEKDLS 175 Query: 369 VY 364 ++ Sbjct: 176 LF 177
>THF1_PROMA (Q7VC23) Protein thf1| Length = 214 Score = 33.5 bits (75), Expect = 0.58 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = -1 Query: 498 YSRFFAVGLFRLLELSN-----ATEPTVLDKLCAALNINKKSVDRDLDVYRNLLSKL 343 YSR A+G++ L+ N + ++ + AL +K V++D++ Y+N + K+ Sbjct: 137 YSRLHAIGIYELISNINEDKKEGDDKEIISECVEALGFSKDRVEKDINQYKNSMEKI 193
>GFAP_HUMAN (P14136) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 432 Score = 30.8 bits (68), Expect = 3.7 Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%) Frame = -3 Query: 619 EEWARSQNGNLLVEFSSRDGEIESILKDISERAQGKGNFRLQPVLCCWLVPFA*ALKCDG 440 E+ AR Q + VE ++ + LK+I + + + + + FA D Sbjct: 213 EQLARQQ---VHVELDVAKPDLTAALKEIRTQYEAMASSNMHEAEEWYRSKFADLT--DA 267 Query: 439 ANRTGQALRCSKHQ*K--KRG*RP*RLPQLTVEIGSSQGTS*GIRREGKEEESREIGDA 269 A R + LR +KH+ +R +L LT ++ S +GT+ + R+ +E+E R + +A Sbjct: 268 AARNAELLRQAKHEANDYRR-----QLQSLTCDLESLRGTNESLERQMREQEERHVREA 321
>THF1_SYNJB (P0C1D1) Protein thf1| Length = 239 Score = 30.8 bits (68), Expect = 3.7 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 8/63 (12%) Frame = -1 Query: 498 YSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLSKL 343 YSR AVGL+ E+ S EP L+ + + L + + V +DL++YR+ L ++ Sbjct: 140 YSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTERVRKDLELYRSSLDRM 199 Query: 342 VQA 334 QA Sbjct: 200 KQA 202
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.4 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 174 QILTVIH-LDSVENYRGHLWLLLAWCSTR 91 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.4 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 174 QILTVIH-LDSVENYRGHLWLLLAWCSTR 91 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 30.0 bits (66), Expect = 6.4 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%) Frame = -1 Query: 174 QILTVIH-LDSVENYRGHLWLLLAWCSTR 91 ++L V H + SV+ YRG LW+L +CST+ Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469
>THF1_SYNJA (Q2JSQ3) Protein thf1| Length = 239 Score = 29.6 bits (65), Expect = 8.3 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 8/63 (12%) Frame = -1 Query: 498 YSRFFAVGLFRLLEL---SNATEPT-----VLDKLCAALNINKKSVDRDLDVYRNLLSKL 343 YSR AVGL+ E S EP L+ + L + + V +DL++YR+ L +L Sbjct: 140 YSRVLAVGLYTAYEAVATSLYKEPEERTRHFLEDVIGNLPFSPERVKKDLELYRSNLDRL 199 Query: 342 VQA 334 QA Sbjct: 200 KQA 202 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,890,321 Number of Sequences: 219361 Number of extensions: 1730972 Number of successful extensions: 4967 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4870 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4960 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
