ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8m07 |
|---|---|
| Clone Library Name | barley_pub |
>RPO2J_ARATH (Q38859) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.6 kDa polypeptide) Length = 116 Score = 115 bits (288), Expect(2) = 1e-31 Identities = 53/65 (81%), Positives = 61/65 (93%) Frame = -3 Query: 552 FEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQ 373 +++DTKI+NAASFT+EREDHTIGNI+RMQLHRD NV FAGY+LPHPL+YKIIVRIHT SQ Sbjct: 21 YDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQ 80 Query: 372 SSPTQ 358 SSP Q Sbjct: 81 SSPMQ 85 Score = 40.4 bits (93), Expect(2) = 1e-31 Identities = 21/37 (56%), Positives = 26/37 (70%) Frame = -1 Query: 380 QANPPQRRAYTQAINDLDKELENLKQAFEDEKTRFES 270 Q++P Q AY QAINDLDKEL+ LK FE E +F + Sbjct: 80 QSSPMQ--AYNQAINDLDKELDYLKNQFEAEVAKFSN 114
>RPO2J_DROME (Q9VJE4) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 88.2 bits (217), Expect = 1e-17 Identities = 38/64 (59%), Positives = 51/64 (79%) Frame = -3 Query: 549 EKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQS 370 E DTK+ NAA FTI +EDHT+GN++R QL +DPNV FAGYK+PHPL++K ++RI T + Sbjct: 22 ELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAGYKVPHPLEHKFVIRIQTTADY 81 Query: 369 SPTQ 358 SP + Sbjct: 82 SPQE 85
>RPO2J_CAEEL (Q9XVH6) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/66 (57%), Positives = 53/66 (80%) Frame = -3 Query: 549 EKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQS 370 EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAGYK PHPL++KI++RI T + + Sbjct: 21 EKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRIQTTNNT 80 Query: 369 SPTQGV 352 +P + Sbjct: 81 TPADAL 86
>RPO2J_CAEBR (Q60SM4) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 122 Score = 87.0 bits (214), Expect = 3e-17 Identities = 37/66 (56%), Positives = 53/66 (80%) Frame = -3 Query: 549 EKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQS 370 EKDTK+ NAA FTI +EDHT+GN+L++QL +DP V FAGYK PHPL++KI++R+ T + + Sbjct: 21 EKDTKVPNAAIFTINKEDHTLGNMLKIQLLKDPEVLFAGYKNPHPLEHKILLRVQTTNAT 80 Query: 369 SPTQGV 352 +P + Sbjct: 81 TPADAL 86
>RPO2J_ANOGA (Q7PVQ9) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| Length = 117 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/62 (61%), Positives = 50/62 (80%) Frame = -3 Query: 549 EKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQS 370 E D K+ NAA FT+ +EDHT+GN++R QL +DPNV FAGYKLPHPL++K ++RI T S+ Sbjct: 22 ELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEY 81 Query: 369 SP 364 SP Sbjct: 82 SP 83
>RPO2J_MOUSE (O08740) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) (RPB14) Length = 117 Score = 85.9 bits (211), Expect = 7e-17 Identities = 37/63 (58%), Positives = 49/63 (77%) Frame = -3 Query: 546 KDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSS 367 KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAGYK+PHPL++KII+R+ T S Sbjct: 23 KDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYS 82 Query: 366 PTQ 358 P + Sbjct: 83 PQE 85
>RPO2J_HUMAN (P52435) DNA-directed RNA polymerase II subunit J (EC 2.7.7.6)| (DNA-directed RNA polymerase II 13.3 kDa polypeptide) (RPB11) Length = 117 Score = 85.9 bits (211), Expect = 7e-17 Identities = 37/63 (58%), Positives = 49/63 (77%) Frame = -3 Query: 546 KDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSS 367 KDTK+ NA FTI +EDHT+GNI++ QL +DP V FAGYK+PHPL++KII+R+ T S Sbjct: 23 KDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYS 82 Query: 366 PTQ 358 P + Sbjct: 83 PQE 85
>RPB11_SCHPO (P87123) DNA-directed RNA polymerase II 14.1 kDa polypeptide (EC| 2.7.7.6) Length = 123 Score = 71.2 bits (173), Expect = 2e-12 Identities = 33/65 (50%), Positives = 43/65 (66%) Frame = -3 Query: 552 FEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQ 373 +E D+K NAA T+E+EDHT+ N+L QL D V FAGYK+PHPL + I+R+ T Sbjct: 20 YELDSKSPNAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVED 79 Query: 372 SSPTQ 358 SP Q Sbjct: 80 CSPKQ 84
>RPB11_YEAST (P38902) DNA-directed RNA polymerase II 13.6 kDa polypeptide (EC| 2.7.7.6) (B13.6) Length = 120 Score = 57.4 bits (137), Expect = 3e-08 Identities = 27/62 (43%), Positives = 36/62 (58%) Frame = -3 Query: 549 EKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQS 370 + DTK NA T E+EDHT+GN++R +L D V FA YK+ HP + +RI T Sbjct: 22 DPDTKAPNAVVITFEKEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGY 81 Query: 369 SP 364 P Sbjct: 82 DP 83
>RPC19_SCHPO (Q09177) DNA-directed RNA polymerases I and III 14 kDa polypeptide| (EC 2.7.7.6) Length = 125 Score = 56.6 bits (135), Expect = 5e-08 Identities = 23/55 (41%), Positives = 37/55 (67%) Frame = -3 Query: 531 MNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSS 367 + + +F I++EDHT+GN LR + ++P V F GY +PHP + K+ RI TA ++ Sbjct: 32 LTSVTFQIQKEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTT 86
>RPC19_YEAST (P28000) DNA-directed RNA polymerases I and III 16 kDa polypeptide| (EC 2.7.7.6) (AC19) Length = 142 Score = 55.1 bits (131), Expect = 1e-07 Identities = 23/53 (43%), Positives = 36/53 (67%) Frame = -3 Query: 525 AASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSS 367 +ASF I EDHT+GN LR + ++P+V F GY +PHP + + +RI T +++ Sbjct: 60 SASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETT 112
>RPO2J_PLAF7 (Q8IER7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/43 (55%), Positives = 32/43 (74%) Frame = -3 Query: 516 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRI 388 F I+ EDHTIGN++++QL +DP V FA Y+ PHPLQ I + I Sbjct: 38 FVIKLEDHTIGNLIKIQLCQDPKVLFAAYRQPHPLQNAIEITI 80
>RPO2J_PLACH (Q4XS21) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/43 (55%), Positives = 31/43 (72%) Frame = -3 Query: 516 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRI 388 FTI+ EDHTIGN+++ L +DP V FA Y+ PHPLQ I + I Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITI 80
>RPO2J_PLABA (Q4YZZ7) Probable DNA-directed RNA polymerase II subunit J (EC| 2.7.7.6) Length = 126 Score = 53.9 bits (128), Expect = 3e-07 Identities = 24/43 (55%), Positives = 31/43 (72%) Frame = -3 Query: 516 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRI 388 FTI+ EDHTIGN+++ L +DP V FA Y+ PHPLQ I + I Sbjct: 38 FTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNVIEITI 80
>RPO1D_HUMAN (Q9Y2S0) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/72 (34%), Positives = 39/72 (54%) Frame = -3 Query: 528 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQGVY 349 + +F + EDHT+GN LR + ++P V F GY HP + KI +RI T+G Sbjct: 38 HCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQ-------TRGTL 90 Query: 348 PSNQ*SRQGARE 313 P+ + ++G E Sbjct: 91 PAVEPFQRGLNE 102
>RPO1D_XENLA (Q5XK67) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 114 Score = 50.4 bits (119), Expect = 3e-06 Identities = 21/49 (42%), Positives = 30/49 (61%) Frame = -3 Query: 528 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHT 382 + +F + EDHT+GN LR + ++P V F GY + HP + KI RI T Sbjct: 22 SCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQT 70
>RPOL_SULSO (Q980K0) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 92 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/55 (47%), Positives = 31/55 (56%) Frame = -3 Query: 528 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSP 364 N IE EDHT+GN++ L R V FA Y PHPL KIIV+I T +P Sbjct: 11 NYLELEIEGEDHTLGNLIAGTLRRISGVSFASYYQPHPLSDKIIVKILTDGSITP 65
>RPOL_SULTO (Q96YA7) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 93 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/59 (40%), Positives = 34/59 (57%) Frame = -3 Query: 528 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQGV 352 N I+ E+HT+GN+L+ L + P V FA Y PHPL II++I T SP + + Sbjct: 11 NYLELQIDGEEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEAL 69
>RPO1D_MOUSE (P97304) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| (DNA-directed RNA polymerase I 16 kDa polypeptide) (RPA16) Length = 133 Score = 49.3 bits (116), Expect = 7e-06 Identities = 25/69 (36%), Positives = 38/69 (55%) Frame = -3 Query: 519 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQGVYPSN 340 +F + EDHT+GN LR + ++P V F GY HP + KI +RI T+G P+ Sbjct: 41 TFVLHEEDHTLGNCLRYIIMKNPEVEFCGYTTTHPSESKINLRIQ-------TRGALPAV 93 Query: 339 Q*SRQGARE 313 + ++G E Sbjct: 94 EPFQKGLNE 102
>RPO1D_CAEBR (Q61IX2) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 145 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/57 (42%), Positives = 34/57 (59%) Frame = -3 Query: 552 FEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHT 382 FE+D + + + EDHTIGN ++ L R V F GY +PHPL+ KI+ R+ T Sbjct: 55 FEQDPSNL---TLILYEEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQT 108
>RPO1D_CAEEL (P34476) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 144 Score = 48.9 bits (115), Expect = 1e-05 Identities = 24/57 (42%), Positives = 33/57 (57%) Frame = -3 Query: 552 FEKDTKIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHT 382 FE+D + + EDHTIGN ++ L R V F GY +PHPL+ KI+ R+ T Sbjct: 54 FEQDPSNLTLIMY---EEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQT 107
>RPOL_SULAC (P46217) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 90 Score = 48.5 bits (114), Expect = 1e-05 Identities = 24/59 (40%), Positives = 33/59 (55%) Frame = -3 Query: 528 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQGV 352 N I+ E+HTIGN+L+ L + P V FA Y LPHPL I ++I T S + + Sbjct: 11 NYLELQIDGEEHTIGNLLKGMLLKVPGVKFAAYSLPHPLITSITIKILTDGSISAREAL 69
>RPO1D_BRARE (Q6DRI4) DNA-directed RNA polymerase I subunit D (EC 2.7.7.6)| Length = 112 Score = 47.4 bits (111), Expect = 3e-05 Identities = 20/46 (43%), Positives = 28/46 (60%) Frame = -3 Query: 519 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHT 382 +F + EDHT+GN LR + + +V F GY + HP + KI RI T Sbjct: 24 TFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQT 69
>RPO1D_DROME (Q9VIZ0) Probable DNA-directed RNA polymerase I subunit D (EC| 2.7.7.6) Length = 105 Score = 45.1 bits (105), Expect = 1e-04 Identities = 19/46 (41%), Positives = 27/46 (58%) Frame = -3 Query: 519 SFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHT 382 +F E HT+GN L+ + R P V F GY +PHP + K+ RI + Sbjct: 19 TFVFTNEGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQS 64
>RPOL_PYRKO (Q5JE88) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 94 Score = 43.1 bits (100), Expect = 5e-04 Identities = 18/39 (46%), Positives = 24/39 (61%) Frame = -3 Query: 528 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL 412 N F +E EDHT N+L LH + +V FAGY + HP+ Sbjct: 11 NLLEFYLEGEDHTFANLLTETLHENEHVTFAGYTIEHPI 49
>RPOL_PYRHO (P57671) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 39.7 bits (91), Expect = 0.006 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = -3 Query: 516 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL 412 F +E EDHT N+L L DP+V F Y + HP+ Sbjct: 15 FYLEGEDHTFANLLTEVLREDPHVKFVAYTIEHPI 49
>RPOL_PYRFU (Q8U4N1) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 39.3 bits (90), Expect = 0.008 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = -3 Query: 528 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQY--KIIVRIHTASQSSPTQG 355 N F +E EDHT N+L L +P+V F Y + HP+ K R+ T + +P + Sbjct: 11 NLLEFYLEGEDHTFANLLVETLRENPHVKFTAYTIEHPITMARKPRFRVVTDGEITPEEA 70 Query: 354 V 352 + Sbjct: 71 L 71
>RPOL_PYRAB (Q9V2M4) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 95 Score = 38.5 bits (88), Expect = 0.013 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -3 Query: 537 KIMNAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL 412 K + F +E EDHT N+L L +P+V F Y + HP+ Sbjct: 8 KEQDLLEFYLEGEDHTFANLLTETLRENPHVKFVAYTIEHPI 49
>RPOL_METTH (O27372) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 85 Score = 33.1 bits (74), Expect = 0.54 Identities = 15/39 (38%), Positives = 19/39 (48%) Frame = -3 Query: 528 NAASFTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPL 412 N E E HT+ N+LR L D V A Y + HP+ Sbjct: 9 NEMEIVFEGETHTLCNVLRSILMEDEKVKAAAYSIDHPI 47
>RPOL_ARCFU (O30032) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 86 Score = 32.3 bits (72), Expect = 0.93 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = -3 Query: 510 IEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQGVYPSNQ 337 I+ E HT N+L+ L D +V A Y +PHPL + + I T S P + V +N+ Sbjct: 17 IKGEGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIKT-SGVDPLEAVKRANE 73
>RPOL_METKA (Q8TZ81) DNA-directed RNA polymerase subunit L (EC 2.7.7.6)| Length = 112 Score = 30.4 bits (67), Expect = 3.5 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -3 Query: 501 EDHTIGNILRMQLHRDPNVHFAGYKLPHPL 412 EDHT+ N+LR L+R + A Y++ HP+ Sbjct: 25 EDHTLCNLLRWALNRQDGI-IATYRIEHPI 53
>FOLD_CHLPN (Q9Z8K3) FolD bifunctional protein [Includes:| Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] Length = 286 Score = 29.6 bits (65), Expect = 6.0 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Frame = -3 Query: 498 DHTIGNILRM--QLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQGVYPSN 340 D T+ ++L++ +L++DP++H +LP P V + S G++P N Sbjct: 66 DSTLSSVLKLIERLNQDPSIHGILVQLPLPKHLDSEVILQAISPDKDVDGLHPVN 120
>INSRR_CAVPO (P14617) Insulin receptor-related protein precursor (EC 2.7.10.1)| (IRR) (IR-related receptor) [Contains: Insulin receptor-related protein alpha chain; Insulin receptor-related protein beta chain] Length = 1300 Score = 29.6 bits (65), Expect = 6.0 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -1 Query: 416 PFSTRSLLGSILQANPPQRRAYTQAINDLDKEL 318 P + L+ S Q NP R +TQ +N + KEL Sbjct: 1218 PHQLQELMSSCWQQNPRLRPTFTQILNSIQKEL 1250
>PDE1_SCHPO (P36599) 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17)| (PDEase) Length = 346 Score = 29.6 bits (65), Expect = 6.0 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = +1 Query: 352 YALRWGGLACSM---DPNNDLVLKGVRQLIASKVNIWVPVQLHAEDVADGVVFTFNCERC 522 Y L +G + M +P N + + LIA + + ++ D+ D ++F C R Sbjct: 216 YFLAFGDVEPDMVASEPLNIHIWRACSSLIAQRKLSHILIECSTPDIPDTLLFGHFCPRH 275 Query: 523 SIHDLCIL 546 +++LCIL Sbjct: 276 LVNELCIL 283
>T1RA_ECOLI (Q07736) Type I restriction enzyme EcoAI R protein (EC 3.1.21.3)| (R.EcoAI) Length = 810 Score = 29.3 bits (64), Expect = 7.9 Identities = 14/50 (28%), Positives = 24/50 (48%) Frame = -1 Query: 458 GTQMFTLLAISCLTPFSTRSLLGSILQANPPQRRAYTQAINDLDKELENL 309 G Q + + L PF + L I++ R Y QA+++L+ E+ L Sbjct: 756 GVQEIESIQVLKLKPFDSMGTLPEIIKTGFGDRNGYNQALSELENEIYQL 805
>TNP2_ECOLI (P06694) Transposase for transposon Tn21| Length = 988 Score = 29.3 bits (64), Expect = 7.9 Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Frame = -3 Query: 516 FTIEREDHTIGNILRMQLHRDPNVHFAGYKLPHPLQYKIIVRIHTASQSSPTQGVYPSNQ 337 FT+ + + + + D + A + H + +I+ A + + + + +N+ Sbjct: 116 FTMSHYRQAVQMLTELAMQTDKGIVLASALIGHLRRQSVILPALNAVERASAEAITRANR 175 Query: 336 *SRQGAREPEASF*GR--EDAIRKYEAGLLGWLCWMR 232 EP A R +D +++ + G WL W+R Sbjct: 176 RIYDALAEPLADAHRRRLDDLLKRRDNGKTTWLAWLR 212 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,041,405 Number of Sequences: 219361 Number of extensions: 1449282 Number of successful extensions: 4349 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 4088 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4336 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
