ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41n15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L48286.1|BLYSRP543R Hordeum vulgare Srp54-2 mRNA, complete sequence; and signal recognition particle 54 kDa subunit (Srp 54-3) mRNA, complete cds Length = 1707 Score = 839 bits (423), Expect = 0.0 Identities = 467/479 (97%), Gaps = 4/479 (0%) Strand = Plus / Minus Query: 12 tttggggttt-aaactccccagnagcccacgtaaacn-gataataaagtcacaaaatcca 69 |||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct: 1704 tttggggtttcaaactccccagaagcccacgtaaaccagataataaagtcacaaaatcca 1645 Query: 70 cactcagtgaatttgattgtctatacacgtcagttccagagaaatttaagtacaatgggg 129 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1644 cactcagtgaatttgattgtcta--cacgtcagttccagagaaatttaagtacaatgggg 1587 Query: 130 agttaggaaaacatatactgcagtatcttcttgtcaggagagaaattctacaacgcagca 189 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1586 agttaggaaaacatatactgcagtatcttcctgtcaggagagaaattctacaacgcagca 1527 Query: 190 agcgcaccacctacatttgcaagactaagcaccacccctcatgccagcaagcattttgct 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1526 agcgcaccacctacatttgcaagactaagcaccacccctcatgccagcaagcattttgct 1467 Query: 250 cgtgtccttgcctccgcccaattgtttcaggagagcctccaagccacttttgccccccat 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1466 cgtgtccttgcctccgcccaattgtttcaggagagcctccaagccacttttgccccccat 1407 Query: 310 ctgctgcaccacttgtggcggcatgactttgagcatcttctggatggcctgagcactcat 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1406 ctgctgcaccacttgtggcggcatgactttgagcatcttctggatggcctgagcactcat 1347 Query: 370 ctttccattcggcggtatcaatttcgacacattcagcttgctccacatcttggctagtcg 429 |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1346 ctttccattctgcggtatcaatttcgacacattacgcttgctccacatcttggctagtcg 1287 Query: 430 cttgtactcttccagcatctccatcacgtccttgagtttnctgccggaccctcgagcga 488 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 1286 cttgtactcttccagcatctccatcacgtccttgactttcctgccggaccctcgagcga 1228
>gb|L48284.1|BLYSRP541R Hordeum vulgare signal recognition particle 54 kDa subunit (Srp54-1) mRNA, complete cds Length = 1732 Score = 97.6 bits (49), Expect = 3e-17 Identities = 78/88 (88%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcatctccatcacgtcc 460 |||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| Sbjct: 1374 ttcatcttgctccacatcttggctagccgcttgtactcttccagcatgtccgtcacgtct 1315 Query: 461 ttgagtttnctgccggaccctcgagcga 488 ||| || ||||| ||||||||||||| Sbjct: 1314 ctgatttgcctgccagaccctcgagcga 1287 Score = 50.1 bits (25), Expect = 0.007 Identities = 57/67 (85%), Gaps = 3/67 (4%) Strand = Plus / Minus Query: 198 acctacatttgcaagactaagcaccaccc---ctcatgccagcaagcattttgctcgtgt 254 |||||||||||| || |||| |||||||| | ||||||| | |||||||||||| ||| Sbjct: 1586 acctacatttgccaggctaatcaccacccagtcccatgccaccgagcattttgctcatgt 1527 Query: 255 ccttgcc 261 ||||||| Sbjct: 1526 ccttgcc 1520
>gb|L48285.1|BLYSRP542R Hordeum vulgare signal recognition particle 54 kDa subunit (Srp54-2) mRNA, complete cds Length = 1856 Score = 97.6 bits (49), Expect = 3e-17 Identities = 78/88 (88%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcatctccatcacgtcc 460 |||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||| Sbjct: 1440 ttcatcttgctccacatcttggctagccgcttgtactcttccagcatgtccgtcacgtct 1381 Query: 461 ttgagtttnctgccggaccctcgagcga 488 ||| || ||||| ||||||||||||| Sbjct: 1380 ctgatttgcctgccagaccctcgagcga 1353 Score = 50.1 bits (25), Expect = 0.007 Identities = 57/67 (85%), Gaps = 3/67 (4%) Strand = Plus / Minus Query: 198 acctacatttgcaagactaagcaccaccc---ctcatgccagcaagcattttgctcgtgt 254 |||||||||||| || |||| |||||||| | ||||||| | |||||||||||| ||| Sbjct: 1652 acctacatttgccaggctaatcaccacccagtcccatgccaccgagcattttgctcatgt 1593 Query: 255 ccttgcc 261 ||||||| Sbjct: 1592 ccttgcc 1586
>ref|NM_103783.1| Arabidopsis thaliana 7S RNA binding / GTP binding / RNA binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding AT1G48900 mRNA, complete cds Length = 1814 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcatctccatcac 456 |||| ||||||||| ||||| ||||| | |||||||||||||| |||||||||||| Sbjct: 1434 ttcatcttgctccatatcttcgctagcctcttgtactcttccaacatctccatcac 1379
>gb|AF446864.1|AF446864 Arabidopsis thaliana At1g48900/F27K7_8 mRNA, complete cds Length = 1488 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcatctccatcac 456 |||| ||||||||| ||||| ||||| | |||||||||||||| |||||||||||| Sbjct: 1298 ttcatcttgctccatatcttcgctagcctcttgtactcttccaacatctccatcac 1243
>gb|AY054273.1| Arabidopsis thaliana At1g48900/F27K7_8 mRNA, complete cds Length = 1747 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcatctccatcac 456 |||| ||||||||| ||||| ||||| | |||||||||||||| |||||||||||| Sbjct: 1429 ttcatcttgctccatatcttcgctagcctcttgtactcttccaacatctccatcac 1374
>gb|AY052331.1| Arabidopsis thaliana At1g48900/F27K7_8 mRNA, complete cds Length = 1815 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcatctccatcac 456 |||| ||||||||| ||||| ||||| | |||||||||||||| |||||||||||| Sbjct: 1434 ttcatcttgctccatatcttcgctagcctcttgtactcttccaacatctccatcac 1379
>emb|BX813619.1|CNS0AEMN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1614 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcatctccatcac 456 |||| ||||||||| ||||| ||||| | |||||||||||||| |||||||||||| Sbjct: 1323 ttcatcttgctccatatcttcgctagcctcttgtactcttccaacatctccatcac 1268
>gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence Length = 54313 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcatctccatcac 456 |||| ||||||||| ||||| ||||| | |||||||||||||| |||||||||||| Sbjct: 34853 ttcatcttgctccatatcttcgctagcctcttgtactcttccaacatctccatcac 34798
>gb|U12127.1|ATU12127 Arabidopsis thaliana clone SRP-54C signal recognition particle 54 kDa subunit (Srp-54) gene, complete cds Length = 2964 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcatctccatcac 456 |||| ||||||||| ||||| ||||| | |||||||||||||| |||||||||||| Sbjct: 2602 ttcatcttgctccatatcttcgctagcctcttgtactcttccaacatctccatcac 2547
>gb|AC135414.31| Medicago truncatula clone mth2-8n20, complete sequence Length = 127018 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 407 ttgctccacatcttggctagtcgcttgtactcttccagcatctccat 453 |||||||| ||||| || || |||||||||||||||| ||||||||| Sbjct: 102230 ttgctccatatctttgcgagacgcttgtactcttccatcatctccat 102276
>gb|AC147009.5| Medicago truncatula clone mth2-139j3, complete sequence Length = 125303 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 407 ttgctccacatcttggctagtcgcttgtactcttccagcatctccat 453 |||||||| ||||| || || |||||||||||||||| ||||||||| Sbjct: 24789 ttgctccatatctttgcgagacgcttgtactcttccatcatctccat 24743
>gb|BT017553.1| Zea mays clone EL01N0424E11.c mRNA sequence Length = 1037 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 425 agtcgcttgtactcttccagcatctccat 453 ||||||||||||||||||||||| ||||| Sbjct: 475 agtcgcttgtactcttccagcatgtccat 447
>gb|AY106300.1| Zea mays PCO070291 mRNA sequence Length = 794 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 425 agtcgcttgtactcttccagcatctccat 453 ||||||||||||||||||||||| ||||| Sbjct: 332 agtcgcttgtactcttccagcatgtccat 304
>ref|NM_101400.2| Arabidopsis thaliana ATHSRP54A; 7S RNA binding / GTP binding / RNA binding / mRNA binding / nucleoside-triphosphatase/ nucleotide binding AT1G15310 (ATHSRP54A) mRNA, complete cds Length = 1685 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 430 cttgtactcttccagcatctccatcac 456 |||||||||||||| |||||||||||| Sbjct: 1377 cttgtactcttccaacatctccatcac 1351
>ref|XM_475677.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1452 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcat 447 |||| |||||| |||| |||||| | || |||||||||||||||||| Sbjct: 1298 ttcaacttgctacacaccttggcgattctcttgtactcttccagcat 1252
>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0108E17, complete sequence Length = 139829 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcat 447 |||| |||||| |||| |||||| | || |||||||||||||||||| Sbjct: 98732 ttcaacttgctacacaccttggcgattctcttgtactcttccagcat 98778
>dbj|AK221684.1| Arabidopsis thaliana mRNA for putative signal recognition particle 54 kDa subunit, complete cds, clone: RAFL14-89-A07 Length = 1630 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 430 cttgtactcttccagcatctccatcac 456 |||||||||||||| |||||||||||| Sbjct: 1292 cttgtactcttccaacatctccatcac 1266
>gb|AF344329.1| Arabidopsis thaliana clone C00252 (e) unknown protein (At1g15310) mRNA, complete cds Length = 1440 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 430 cttgtactcttccagcatctccatcac 456 |||||||||||||| |||||||||||| Sbjct: 1266 cttgtactcttccaacatctccatcac 1240
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcat 447 |||| |||||| |||| |||||| | || |||||||||||||||||| Sbjct: 25029879 ttcaacttgctacacaccttggcgattctcttgtactcttccagcat 25029925
>gb|AY086187.1| Arabidopsis thaliana clone 22158 mRNA, complete sequence Length = 1648 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 430 cttgtactcttccagcatctccatcac 456 |||||||||||||| |||||||||||| Sbjct: 1377 cttgtactcttccaacatctccatcac 1351
>dbj|AK068958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001K24, full insert sequence Length = 2000 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcat 447 |||| |||||| |||| |||||| | || |||||||||||||||||| Sbjct: 1511 ttcaacttgctacacaccttggcgattctcttgtactcttccagcat 1465
>dbj|AB115419.1| Oryza sativa (japonica cultivar-group) srp54-2 mRNA for signal recognition particle 54kDa subunit, complete cds Length = 1676 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Minus Query: 401 ttcagcttgctccacatcttggctagtcgcttgtactcttccagcat 447 |||| |||||| |||| |||||| | || |||||||||||||||||| Sbjct: 1413 ttcaacttgctacacaccttggcgattctcttgtactcttccagcat 1367
>gb|AC007591.2|F9L1 Arabidopsis thaliana chromosome 1 BAC F9L1 sequence, complete sequence Length = 141984 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 430 cttgtactcttccagcatctccatcac 456 |||||||||||||| |||||||||||| Sbjct: 84877 cttgtactcttccaacatctccatcac 84903
>gb|L19997.1|ATHSRP54A Arabidopsis thaliana signal recognition particle 54 kDa subunit (Srp54-1) gene, complete cds Length = 4060 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 430 cttgtactcttccagcatctccatcac 456 |||||||||||||| |||||||||||| Sbjct: 3343 cttgtactcttccaacatctccatcac 3317
>ref|NM_124327.1| Arabidopsis thaliana 7S RNA binding / GTP binding / RNA binding / mRNA binding AT5G49500 mRNA, complete cds Length = 1494 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 431 ttgtactcttccagcatctccatcac 456 ||||||||||||| |||||||||||| Sbjct: 1274 ttgtactcttccaacatctccatcac 1249
>emb|Z34518.1|LESSRPSPG L.esculentum (cv. Rentita) mRNA for 54-kD signal recognition particle (SRP) specific protein Length = 9288 Score = 44.1 bits (22), Expect = 0.42 Identities = 34/38 (89%) Strand = Plus / Minus Query: 419 ttggctagtcgcttgtactcttccagcatctccatcac 456 ||||| ||||| ||||| ||||||| |||||||||||| Sbjct: 8307 ttggcaagtcgtttgtattcttccaacatctccatcac 8270
>dbj|AB023033.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K6M13 Length = 77129 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 431 ttgtactcttccagcatctccatcac 456 ||||||||||||| |||||||||||| Sbjct: 12921 ttgtactcttccaacatctccatcac 12946
>gb|U12126.1|ATU12126 Arabidopsis thaliana clone SRP-54B signal recognition particle 54 kDa subunit (Srp-54) gene, complete cds Length = 3152 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 431 ttgtactcttccagcatctccatcac 456 ||||||||||||| |||||||||||| Sbjct: 2571 ttgtactcttccaacatctccatcac 2546
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 312 gctgcaccacttgtggcggca 332 ||||||||||||||||||||| Sbjct: 1280358 gctgcaccacttgtggcggca 1280378
>emb|AL353722.8| Human DNA sequence from clone RP11-343D22 on chromosome 10, complete sequence Length = 34523 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 gtttcaggagagcctccaagccact 297 |||||||||||||||| |||||||| Sbjct: 27077 gtttcaggagagcctcgaagccact 27101
>emb|AL591136.20| Mouse DNA sequence from clone RP23-273P3 on chromosome 11 Contains the 5' end of a novel gene, two novel genes, the Taok1 gene for TAO kinase 1, a eukaryotic translation initiation factor 2 subunit 1 alpha (Eif2s1) pseudogene, a ribosomal protein S2 (Rps2) pseudogene, the Cryba1 gene for crystallin beta A1 and two CpG islands, complete sequence Length = 220230 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 186 agcaagcgcaccacctacatt 206 ||||||||||||||||||||| Sbjct: 110394 agcaagcgcaccacctacatt 110414
>gb|AY123253.3| Klebsiella pneumoniae plasmid pRMH760, partial sequence Length = 45325 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tcttcttgtcaggagagaaa 174 |||||||||||||||||||| Sbjct: 58 tcttcttgtcaggagagaaa 39
>ref|NM_121366.3| Arabidopsis thaliana GUN5 (GENOMES UNCOUPLED 5) AT5G13630 (GUN5) mRNA, complete cds Length = 4524 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tcaggagagcctccaagcca 295 |||||||||||||||||||| Sbjct: 900 tcaggagagcctccaagcca 881
>gb|BC076949.1| Xenopus tropicalis high density lipoprotein binding protein (vigilin), mRNA (cDNA clone MGC:89329 IMAGE:6987539), complete cds Length = 5179 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tttgccccccatctgctgca 317 |||||||||||||||||||| Sbjct: 4851 tttgccccccatctgctgca 4870
>ref|XM_545544.2| PREDICTED: Canis familiaris similar to phosphodiesterase 11A (LOC488422), mRNA Length = 3030 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tgtttcaggagagcctccaa 291 |||||||||||||||||||| Sbjct: 2894 tgtttcaggagagcctccaa 2913
>emb|AL606537.10| Human DNA sequence from clone RP11-53A1 on chromosome 1 Contains the 3' end of the PROX1 gene for prospero-related homeobox protein 1, complete sequence Length = 116821 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 aagactaagcaccacccctc 229 |||||||||||||||||||| Sbjct: 51205 aagactaagcaccacccctc 51186
>ref|NM_001006853.1| Xenopus tropicalis high density lipoprotein binding protein (vigilin) (hdlbp), mRNA Length = 5179 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tttgccccccatctgctgca 317 |||||||||||||||||||| Sbjct: 4851 tttgccccccatctgctgca 4870
>emb|AL929358.1|PFA929358 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5 Length = 254050 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 agtgaatttgattgtctata 94 |||||||||||||||||||| Sbjct: 234284 agtgaatttgattgtctata 234303
>emb|AL391710.1|ATT6I14 Arabidopsis thaliana DNA chromosome 5, BAC clone T6I14 (ESSA project) Length = 90472 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tcaggagagcctccaagcca 295 |||||||||||||||||||| Sbjct: 73792 tcaggagagcctccaagcca 73811
>emb|BX769174.7| Zebrafish DNA sequence from clone DKEY-246O14, complete sequence Length = 187545 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 334 gactttgagcatcttctggatggc 357 |||||||||| ||||||||||||| Sbjct: 98331 gactttgagcctcttctggatggc 98308
>gb|AY078971.1| Arabidopsis thaliana AT5g13630/MSH12_9 mRNA, complete cds Length = 4363 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tcaggagagcctccaagcca 295 |||||||||||||||||||| Sbjct: 900 tcaggagagcctccaagcca 881
>gb|AY070133.1| Arabidopsis thaliana AT5g13630/MSH12_9 mRNA, complete cds Length = 4267 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tcaggagagcctccaagcca 295 |||||||||||||||||||| Sbjct: 820 tcaggagagcctccaagcca 801
>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete genome Length = 2516575 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 ccatctgctgcaccacttgt 325 |||||||||||||||||||| Sbjct: 108737 ccatctgctgcaccacttgt 108718
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 gctgcaccacttgtggcggcatga 335 ||||||||||||||||| |||||| Sbjct: 23640137 gctgcaccacttgtggctgcatga 23640114
>gb|AC097648.2| Homo sapiens BAC clone RP11-63H19 from 4, complete sequence Length = 170289 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 tcaggagagaaattctacaa 182 |||||||||||||||||||| Sbjct: 31659 tcaggagagaaattctacaa 31640
>gb|AC010901.8| Homo sapiens BAC clone RP11-544J22 from 2, complete sequence Length = 78185 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 ccaattgtttcaggagagcc 286 |||||||||||||||||||| Sbjct: 72441 ccaattgtttcaggagagcc 72460
>gb|AC012592.10| Homo sapiens BAC clone RP11-381F16 from 2, complete sequence Length = 155682 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 agttccagagaaatttaagt 120 |||||||||||||||||||| Sbjct: 71759 agttccagagaaatttaagt 71778
>ref|XM_225027.3| PREDICTED: Rattus norvegicus similar to CUB and Sushi multiple domains 1 (LOC306613), mRNA Length = 11337 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 ctcttccagcatctccatca 455 |||||||||||||||||||| Sbjct: 81 ctcttccagcatctccatca 100
>gb|BT002311.1| Arabidopsis thaliana At5g13630/MSH12_9 mRNA, complete cds Length = 4146 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tcaggagagcctccaagcca 295 |||||||||||||||||||| Sbjct: 755 tcaggagagcctccaagcca 736
>gb|AC011700.5|AC011700 Homo sapiens Chromosome 1 BAC RP11-478J18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154732 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 aagactaagcaccacccctc 229 |||||||||||||||||||| Sbjct: 31824 aagactaagcaccacccctc 31843
>emb|BX005146.4| Zebrafish DNA sequence from clone CH211-152N19 in linkage group 3, complete sequence Length = 180858 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 agcatcttctggatggcctg 360 |||||||||||||||||||| Sbjct: 142996 agcatcttctggatggcctg 142977
>dbj|AB006704.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSH12 Length = 79259 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 tcaggagagcctccaagcca 295 |||||||||||||||||||| Sbjct: 34534 tcaggagagcctccaagcca 34553
>emb|Z68495.1|ATCHLH A.thaliana CHLH gene Length = 4428 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 276 tcaggagagcctccaagcca 295 |||||||||||||||||||| Sbjct: 892 tcaggagagcctccaagcca 873
>gb|U80458.1|HSU80458 Human microtubule associated protein 1A mRNA, partial cds Length = 4813 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 aggagagcctccaagccact 297 |||||||||||||||||||| Sbjct: 728 aggagagcctccaagccact 747
>emb|CT010468.16| Mouse DNA sequence from clone RP23-315J19 on chromosome 13, complete sequence Length = 155441 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 tgactttgagcatcttctgg 352 |||||||||||||||||||| Sbjct: 124703 tgactttgagcatcttctgg 124684
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 gctgcaccacttgtggcggcatga 335 ||||||||||||||||| |||||| Sbjct: 23568324 gctgcaccacttgtggctgcatga 23568301
>emb|AL772425.7|CNS08CA3 Oryza sativa chromosome 12, . BAC OJ1396_C02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157690 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 gctgcaccacttgtggcggcatga 335 ||||||||||||||||| |||||| Sbjct: 66273 gctgcaccacttgtggctgcatga 66296
>emb|AL844878.4|CNS08CB1 Oryza sativa chromosome 12, . BAC OSJNBb0036A19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128795 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 gctgcaccacttgtggcggcatga 335 ||||||||||||||||| |||||| Sbjct: 115485 gctgcaccacttgtggctgcatga 115508 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,876,430 Number of Sequences: 3902068 Number of extensions: 3876430 Number of successful extensions: 69850 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69666 Number of HSP's gapped (non-prelim): 180 length of query: 488 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 466 effective length of database: 17,147,199,772 effective search space: 7990595093752 effective search space used: 7990595093752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
