>gb|AY104790.1| Zea mays PCO093811 mRNA sequence
          Length = 1604

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 411  aggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggaccatca 470
            |||||||||||||||| |||||| || |||||||||||||||||||| || || ||||||
Sbjct: 1061 aggtctagcagtgacaatgtctccgcgatggagagctcaaggcggaactttggcccatca 1002

                                
Query: 471  tantggtgcannactggcct 490
            || |||||||  ||||||||
Sbjct: 1001 taatggtgcaaaactggcct 982

>ref|XM_475495.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 945

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 408 caaaggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggacca 467
           ||||||||||||||||| |  ||||| ||||||||||||||||| || || || ||||||
Sbjct: 926 caaaggtctagcagtgataaggtctcagctatggagagctcaagacgaaactttggacca 867

                               
Query: 468 tcatantggtgcannactgg 487
           || || |||||||  |||||
Sbjct: 866 tcgtaatggtgcagcactgg 847

>gb|BT016764.1| Zea mays clone Contig597 mRNA sequence
          Length = 1573

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                        
Query: 411  aggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggaccatca 470
            ||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||||
Sbjct: 1067 aggtctagcagggacagggtctccgcgatggagagctcgaggcgaaactttgggccatca 1008

                                
Query: 471  tantggtgcannactggcct 490
            || |||||||  ||||||||
Sbjct: 1007 tagtggtgcaaaactggcct 988

>gb|AY108468.1| Zea mays PCO093809 mRNA sequence
          Length = 1259

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 411 aggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggaccatca 470
           ||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||||
Sbjct: 697 aggtctagcagggacagggtctccgcgatggagagctcgaggcgaaactttgggccatca 638

                               
Query: 471 tantggtgcannactggcct 490
           || |||||||  ||||||||
Sbjct: 637 tagtggtgcaaaactggcct 618

>ref|NM_113623.2| Arabidopsis thaliana unknown protein AT3G27090 mRNA, complete cds
          Length = 1437

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 441 gagagctcaaggcggaatttaggaccatcatantggtgcannactggcct 490
           |||||||||||||||||||| ||||||||||| ||||| |  ||||||||
Sbjct: 963 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcct 914

>gb|AY103299.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, complete cds
          Length = 891

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 441 gagagctcaaggcggaatttaggaccatcatantggtgcannactggcct 490
           |||||||||||||||||||| ||||||||||| ||||| |  ||||||||
Sbjct: 836 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcct 787

>gb|AY058843.1| Arabidopsis thaliana AT3g27090/MOJ10_18 mRNA, complete cds
          Length = 1437

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 441 gagagctcaaggcggaatttaggaccatcatantggtgcannactggcct 490
           |||||||||||||||||||| ||||||||||| ||||| |  ||||||||
Sbjct: 962 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcct 913

>gb|AY087011.1| Arabidopsis thaliana clone 3049 mRNA, complete sequence
          Length = 1426

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                             
Query: 441 gagagctcaaggcggaatttaggaccatcatantggtgcannactggcct 490
           |||||||||||||||||||| ||||||||||| ||||| |  ||||||||
Sbjct: 956 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcct 907

>dbj|AB026649.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOJ10
          Length = 73686

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 441   gagagctcaaggcggaatttaggaccatcatantggtgcannactggcct 490
             |||||||||||||||||||| ||||||||||| ||||| |  ||||||||
Sbjct: 57861 gagagctcaaggcggaattttggaccatcatagtggtgaagtactggcct 57812

>dbj|AK065975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045D18, full
            insert sequence
          Length = 1546

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 408  caaaggtctagcagtgacagtgtctctgctatggagagctcaaggcggaatttaggacca 467
            ||||||||||||||||| |  | ||| ||||||||||||||||| || || || ||||||
Sbjct: 1170 caaaggtctagcagtgataaggcctcagctatggagagctcaagacgaaactttggacca 1111

                                
Query: 468  tcatantggtgcannactgg 487
            || || |||||||  |||||
Sbjct: 1110 tcgtaatggtgcagcactgg 1091

>gb|BT014106.1| Lycopersicon esculentum clone 133210F, mRNA sequence
          Length = 1420

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 444  agctcaaggcggaatttaggaccatcatantggtgcannactggcct 490
            |||||||||||||||||||| ||||| || ||||| |  ||||||||
Sbjct: 1166 agctcaaggcggaatttagggccatcgtaatggtgaaggactggcct 1120

>emb|AJ001304.1|CPHYPOTHE Citrus paradisi mRNA for hypothetical protein
          Length = 1320

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                  
Query: 441 gagagctcaaggcggaatttaggaccatcatantggtgcannactggcctaaaag 495
           ||||||||||| || |||||||||||||| || || ||||  || ||||||||||
Sbjct: 930 gagagctcaagacgaaatttaggaccatcgtagtgatgcaagacaggcctaaaag 876

>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02,
             complete sequence
          Length = 99795

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 435   gctatggagagctcaaggcggaatttaggaccatcatantggtgcannactgg 487
             ||||||||||||||||| || || || |||||||| || |||||||  |||||
Sbjct: 10469 gctatggagagctcaagacgaaactttggaccatcgtaatggtgcagcactgg 10521

>gb|AC130605.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0010D04,
             complete sequence
          Length = 122599

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 435   gctatggagagctcaaggcggaatttaggaccatcatantggtgcannactgg 487
             ||||||||||||||||| || || || |||||||| || |||||||  |||||
Sbjct: 93586 gctatggagagctcaagacgaaactttggaccatcgtaatggtgcagcactgg 93638

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                     
Query: 435      gctatggagagctcaaggcggaatttaggaccatcatantggtgcannactgg 487
                ||||||||||||||||| || || || |||||||| || |||||||  |||||
Sbjct: 24407796 gctatggagagctcaagacgaaactttggaccatcgtaatggtgcagcactgg 24407848

>gb|BT014019.1| Lycopersicon esculentum clone 133081F, mRNA sequence
          Length = 1322

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 46/55 (83%)
 Strand = Plus / Minus

                                                                  
Query: 441 gagagctcaaggcggaatttaggaccatcatantggtgcannactggcctaaaag 495
           ||||||||||| || ||||| || |||||||| || ||||  ||||| |||||||
Sbjct: 978 gagagctcaagacgaaatttgggtccatcatagtgatgcagcactggtctaaaag 924

>emb|AJ491856.1|PSA491856 Pisum sativum mRNA for GDA2 protein (gda2 gene)
          Length = 1119

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 40/47 (85%)
 Strand = Plus / Minus

                                                          
Query: 444 agctcaaggcggaatttaggaccatcatantggtgcannactggcct 490
           ||||||||||| || || ||||||||||| || ||||  ||||||||
Sbjct: 611 agctcaaggcgaaactttggaccatcataatgatgcaaaactggcct 565

>emb|X72385.1|DCB2P D.carota mRNA for B2 protein
          Length = 935

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 443 gagctcaaggcggaatttaggaccatcatantggtg 478
           |||||| |||||||| ||||||||||| || |||||
Sbjct: 593 gagctccaggcggaacttaggaccatcgtagtggtg 558

>gb|AC140935.1| Gallus gallus BAC clone TAM31-90L17 from chromosome ul, complete
             sequence
          Length = 72054

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 350   aagaaccacagagcaaccaca 370
             |||||||||||||||||||||
Sbjct: 11917 aagaaccacagagcaaccaca 11897

>gb|AC132450.3| Mus musculus BAC clone RP23-187N8 from chromosome 18, complete sequence
          Length = 201282

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     agcatgatgatacaaaaacc 35
              ||||||||||||||||||||
Sbjct: 131051 agcatgatgatacaaaaacc 131070

>gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complete sequence
          Length = 117853

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   caaaggtctagcagtgacag 427
             ||||||||||||||||||||
Sbjct: 32397 caaaggtctagcagtgacag 32378

>emb|BX901912.10| Zebrafish DNA sequence from clone CH211-212D2 in linkage group 1,
             complete sequence
          Length = 140289

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 294   agaacagaacattgtgaaaacatc 317
             |||||| |||||||||||||||||
Sbjct: 99308 agaacataacattgtgaaaacatc 99331

>emb|AL365229.13| Human DNA sequence from clone RP11-723K16 on chromosome 20 Contains the
             5' end of the CDH4 gene for retinal cadherin 4 type 1
             (R-cadherin), complete sequence
          Length = 121478

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   ggacagaacagaacattgtg 309
             ||||||||||||||||||||
Sbjct: 41536 ggacagaacagaacattgtg 41555

>emb|CR626890.8| Zebrafish DNA sequence from clone DKEY-83J7 in linkage group 15,
             complete sequence
          Length = 211127

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    cagcatgatgatacaaaaac 34
             ||||||||||||||||||||
Sbjct: 71515 cagcatgatgatacaaaaac 71534

>emb|BX324206.6| Zebrafish DNA sequence from clone CH211-66O10 in linkage group 15,
              complete sequence
          Length = 164638

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     cagcatgatgatacaaaaac 34
              ||||||||||||||||||||
Sbjct: 127460 cagcatgatgatacaaaaac 127479

>gb|AF523525.1| Gavia immer clone TUMWGi6.1.8 microsatellite sequence
          Length = 479

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 189 agagacaggctcacatctta 208
           ||||||||||||||||||||
Sbjct: 219 agagacaggctcacatctta 238

>emb|BX324151.11| Zebrafish DNA sequence from clone CH211-62C19 in linkage group 15,
             complete sequence
          Length = 182149

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    cagcatgatgatacaaaaac 34
             ||||||||||||||||||||
Sbjct: 18730 cagcatgatgatacaaaaac 18749

>gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75001

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   aaatacataaataaggagaa 148
             ||||||||||||||||||||
Sbjct: 15221 aaatacataaataaggagaa 15202

>emb|BX005188.15| Zebrafish DNA sequence from clone CH211-89H11, complete sequence
          Length = 202570

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    ggcaccaacacagagacagg 197
              ||||||||||||||||||||
Sbjct: 123380 ggcaccaacacagagacagg 123361

>emb|BX247950.12| Zebrafish DNA sequence from clone CH211-51G21, complete sequence
          Length = 172752

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    ggcaccaacacagagacagg 197
              ||||||||||||||||||||
Sbjct: 163530 ggcaccaacacagagacagg 163511

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 375     tgttccgaagcagattaggc 394
               ||||||||||||||||||||
Sbjct: 4376314 tgttccgaagcagattaggc 4376333

>gb|AC109822.5| Homo sapiens BAC clone RP11-633J12 from 2, complete sequence
          Length = 194235

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     agcatgatgatacaaaaacc 35
              ||||||||||||||||||||
Sbjct: 129695 agcatgatgatacaaaaacc 129714

>gb|AC022966.13| Homo sapiens chromosome 17, clone RP11-323N12, complete sequence
          Length = 184139

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   acaggctcacatcttagagg 212
             ||||||||||||||||||||
Sbjct: 98897 acaggctcacatcttagagg 98916

>dbj|AP003835.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1506_G02
          Length = 106742

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   tgttccgaagcagattaggc 394
             ||||||||||||||||||||
Sbjct: 16163 tgttccgaagcagattaggc 16182

>emb|BX004779.16| Zebrafish DNA sequence from clone CH211-14K19 in linkage group 1,
             complete sequence
          Length = 196036

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 294   agaacagaacattgtgaaaacatc 317
             |||||| |||||||||||||||||
Sbjct: 44840 agaacataacattgtgaaaacatc 44863

>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3
          Length = 252150

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     tcatgatgcatcacaacagt 73
              ||||||||||||||||||||
Sbjct: 247239 tcatgatgcatcacaacagt 247220

>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete
             sequence
          Length = 229724

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    tcatgatgcatcacaacagt 73
             ||||||||||||||||||||
Sbjct: 35009 tcatgatgcatcacaacagt 35028


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,221,398
Number of Sequences: 3902068
Number of extensions: 4221398
Number of successful extensions: 85020
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84920
Number of HSP's gapped (non-prelim): 100
length of query: 495
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 473
effective length of database: 17,147,199,772
effective search space: 8110625492156
effective search space used: 8110625492156
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)