ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41n01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYSN_ACACA (P05659) Myosin-2 heavy chain, non muscle (Myosin II ... 30 2.9
2MC5R_BOVIN (P56451) Melanocortin receptor 5 (MC5-R) 29 6.4
3RBP24_HUMAN (Q4ZG46) Ran-binding protein 2-like 4 (RanBP2L4) 29 8.3
4GCC2_HUMAN (Q8IWJ2) GRIP and coiled-coil domain-containing prote... 29 8.3
5M5_STRP5 (P02977) M protein, serotype 5 precursor 29 8.3

>MYSN_ACACA (P05659) Myosin-2 heavy chain, non muscle (Myosin II heavy chain, non|
            muscle)
          Length = 1509

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -3

Query: 379  KDIKEIRSALQEEKAG-----SKTEQTGQTQEDQVLKTDDEKTEQQTAVKA*K 236
            +++ + R+ L+EEK+G     SK +Q GQ  ED   + D  K++   A K+ K
Sbjct: 1066 EELAQTRAQLEEEKSGKEAASSKAKQLGQQLEDARSEVDSLKSKLSAAEKSLK 1118



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>MC5R_BOVIN (P56451) Melanocortin receptor 5 (MC5-R)|
          Length = 325

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 69  GSMWQASAMCKPVHIHIYPS*PNVLVLCICLIFWVVQMTKLSIHLHKFCL 218
           G +W   A C  V I  Y S    +V+C+  +F  + +   S++ H F L
Sbjct: 164 GGIWAFCASCGTVFIVYYES--TYVVICLIAMFLTMLLLMASLYTHMFLL 211



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>RBP24_HUMAN (Q4ZG46) Ran-binding protein 2-like 4 (RanBP2L4)|
          Length = 1583

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
 Frame = +3

Query: 375  SLKQQITQCELEMFQGNTE--------SQTAVKRWTERRHTDL 479
            +L+QQ+++ E ++FQ   E        SQ ++K   ERR+TDL
Sbjct: 1359 TLQQQLSKMEAQLFQLKNEPTTRSPVSSQQSLKNLRERRNTDL 1401



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>GCC2_HUMAN (Q8IWJ2) GRIP and coiled-coil domain-containing protein 2 (Golgi|
            coiled coil protein GCC185) (CTCL tumor antigen se1-1)
            (CLL-associated antigen KW-11) (NY-REN-53 antigen)
          Length = 1583

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 8/43 (18%)
 Frame = +3

Query: 375  SLKQQITQCELEMFQGNTE--------SQTAVKRWTERRHTDL 479
            +L+QQ+++ E ++FQ   E        SQ ++K   ERR+TDL
Sbjct: 1359 TLQQQLSKMEAQLFQLKNEPTTRSPVSSQQSLKNLRERRNTDL 1401



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>M5_STRP5 (P02977) M protein, serotype 5 precursor|
          Length = 492

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 376 DIKEIRSALQEEKAGSKTEQTGQTQEDQVLKTDDEKTEQQ 257
           D+K     L+ E  G KTE  G   E++ LKT+ ++ E +
Sbjct: 68  DLKTKNEGLKTENEGLKTENEGLKTENEGLKTEKKEHEAE 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,638,602
Number of Sequences: 219361
Number of extensions: 1330702
Number of successful extensions: 3501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3494
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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