ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41m14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009268.1| Triticum aestivum clone wlk8.pk0002.f4:fis, full ... 529 e-147
2ref|NM_190436.1| Oryza sativa (japonica cultivar-group), predic... 198 1e-47
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
4dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
5dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
6dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
7gb|AY103958.1| Zea mays PCO141591 mRNA sequence 178 1e-41
8gb|AE016828.2| Coxiella burnetii RSA 493, complete genome 46 0.11
9gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome... 44 0.42
10gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete g... 42 1.7
11gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.7
12ref|XM_756437.1| Ustilago maydis 521 hypothetical protein (UM053... 42 1.7
13ref|XM_567032.1| Cryptococcus neoformans var. neoformans JEC21 s... 42 1.7
14gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, comp... 42 1.7
15emb|BX537928.1|HSM806046 Homo sapiens genomic DNA; cDNA DKFZp686... 42 1.7
16gb|AC092421.2| Homo sapiens chromosome 3 clone RP11-476A24, comp... 42 1.7
17gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 42 1.7
18gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, comp... 42 1.7
19gb|BC070011.1| Danio rerio zgc:73404, mRNA (cDNA clone MGC:85750... 40 6.6
20gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete seq... 40 6.6
21gb|AC145516.4| Mus musculus BAC clone RP24-157K17 from chromosom... 40 6.6
22gb|AC123928.3| Mus musculus BAC clone RP24-390L8 from chromosome... 40 6.6
23gb|AC145607.3| Mus musculus BAC clone RP24-270N6 from chromosome... 40 6.6
24gb|AC124250.11| Mus musculus chromosome 12, clone RP24-286P13, c... 40 6.6
25gb|AY376457.1| Meriones unguiculatus follicle stimulating hormon... 40 6.6
26gb|AC144627.2| Mus musculus BAC clone RP24-164A21 from chromosom... 40 6.6
27gb|AC145563.2| Mus musculus BAC clone RP24-75L3 from chromosome ... 40 6.6
28gb|AC145566.4| Mus musculus BAC clone RP24-79A15 from chromosome... 40 6.6
29gb|AC144857.3| Mus musculus BAC clone RP24-168C21 from chromosom... 40 6.6
30gb|AC132295.4| Mus musculus BAC clone RP24-325L5 from chromosome... 40 6.6
31emb|BX928750.9| Zebrafish DNA sequence from clone DKEY-162P13 in... 40 6.6
32gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC... 40 6.6
33gb|AC127678.9| Mus musculus BAC clone RP24-233M12 from chromosom... 40 6.6
34emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J... 40 6.6
35emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 m... 40 6.6
36emb|AL954248.1| Pan troglodytes chromosome 22 clone PTB-061A04 m... 40 6.6
37emb|BX323565.10| Zebrafish DNA sequence from clone DKEYP-95B12 i... 40 6.6
38gb|AC175526.4| Mus musculus BAC clone RP24-84E22 from chromosome... 40 6.6
39gb|AC175668.3| Mus musculus BAC clone RP24-319G11 from chromosom... 40 6.6
40gb|AC134557.4| Mus musculus chromosome UNK clone RP24-323H18, co... 40 6.6
41gb|AC142129.4| Rattus norvegicus BAC CH230-183M21 (Children's H... 40 6.6
42dbj|AP006273.1| Papio hamadryas genomic DNA, BAC clone: RPCI41-3... 40 6.6
43dbj|AP006271.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-1... 40 6.6
44dbj|AP001754.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 6.6
45emb|BX004829.12| Zebrafish DNA sequence from clone DKEY-29O15, c... 40 6.6
46dbj|AP001067.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 6.6 
>gb|BT009268.1| Triticum aestivum clone wlk8.pk0002.f4:fis, full insert mRNA sequence
          Length = 1919

 Score =  529 bits (267), Expect = e-147
 Identities = 337/358 (94%), Gaps = 3/358 (0%)
 Strand = Plus / Minus

                                                                        
Query: 131  ttatacaagccatgaaacgtccatttatcatgtaatttattcttctcagtctcatactgc 190
            |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 1828 ttatacaagccatgaaacgtccttttatcatgtaacttattcttctcagtctcatactgc 1769

                                                                        
Query: 191  tgctgtacacatggtcacatggacttcct-agatgaccatcgtatggtatttcagataat 249
            |||||||||  |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 1768 tgctgtaca--tggtcacatggacttccttagataaccatcgtatggtatttcagataat 1711

                                                                        
Query: 250  tatcggatgatatttcacatacttgttgaaccaagaacttagccaactgatccctccagc 309
            |||||| ||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct: 1710 tatcgggtgatatttcgcagacttgttgaaccaataacttagccaactgatccctccagc 1651

                                                                        
Query: 310  ttcaggttcataagtgcatccacctcctgggcaaactcgtaaggaaggtgttcaaagacg 369
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1650 ttcaggttcattagtgcatccacctcctgggcaaactcgtaaggaaggtgttcaaagacg 1591

                                                                        
Query: 370  gccctacagaatccaccgatcatggctgcaacggccttttcatgatctatccccctttgc 429
            || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 1590 gctctacagaacccacctatcatggctgcaacggccttttcatgatcaatccctctttgc 1531

                                                                      
Query: 430  tgaaagtaaaacagctggtcctctccaattttggatgtgcttgcttcatgctcaacac 487
            |||||||| || ||||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct: 1530 tgaaagtagaatagctgatcctcgccaattttggatgtgcttgcctcatgctcaacac 1473



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 47/49 (95%), Gaps = 1/49 (2%)
 Strand = Plus / Minus

                                                             
Query: 69   aaaatggacagacaaaagagaagcgccacggttctcttcgctgtcgtgg 117
            |||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 1880 aaaatggaca-acaaaagagaagcgccgcggttctcttcgctgtcgtgg 1833
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>ref|NM_190436.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1635

 Score =  198 bits (100), Expect = 1e-47
 Identities = 172/196 (87%)
 Strand = Plus / Minus

                                                                        
Query: 292  ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 351
            |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 1631 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 1572

                                                                        
Query: 352  ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 411
            ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 1571 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 1512

                                                                        
Query: 412  tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 471
            || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 1511 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 1452

                            
Query: 472  gcttcatgctcaacac 487
            || |||||||||||||
Sbjct: 1451 gcctcatgctcaacac 1436
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  198 bits (100), Expect = 1e-47
 Identities = 172/196 (87%)
 Strand = Plus / Plus

                                                                            
Query: 292      ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 351
                |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 35499073 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 35499132

                                                                            
Query: 352      ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 411
                ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 35499133 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 35499192

                                                                            
Query: 412      tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 471
                || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 35499193 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 35499252

                                
Query: 472      gcttcatgctcaacac 487
                || |||||||||||||
Sbjct: 35499253 gcctcatgctcaacac 35499268



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 145      aaacgtccatttatcatgtaatttattcttctca 178
                |||||||||||  ||||| |||||||||||||||
Sbjct: 35498968 aaacgtccattgctcatgcaatttattcttctca 35499001
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>dbj|AP003252.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0446G04
          Length = 143515

 Score =  198 bits (100), Expect = 1e-47
 Identities = 172/196 (87%)
 Strand = Plus / Plus

                                                                         
Query: 292   ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 351
             |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 29260 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 29319

                                                                         
Query: 352   ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 411
             ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 29320 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 29379

                                                                         
Query: 412   tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 471
             || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 29380 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 29439

                             
Query: 472   gcttcatgctcaacac 487
             || |||||||||||||
Sbjct: 29440 gcctcatgctcaacac 29455



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 145   aaacgtccatttatcatgtaatttattcttctca 178
             |||||||||||  ||||| |||||||||||||||
Sbjct: 29155 aaacgtccattgctcatgcaatttattcttctca 29188
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>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1088C09
          Length = 154084

 Score =  198 bits (100), Expect = 1e-47
 Identities = 172/196 (87%)
 Strand = Plus / Plus

                                                                          
Query: 292    ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 351
              |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 123022 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 123081

                                                                          
Query: 352    ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 411
              ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 123082 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 123141

                                                                          
Query: 412    tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 471
              || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 123142 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 123201

                              
Query: 472    gcttcatgctcaacac 487
              || |||||||||||||
Sbjct: 123202 gcctcatgctcaacac 123217



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                
Query: 145    aaacgtccatttatcatgtaatttattcttctca 178
              |||||||||||  ||||| |||||||||||||||
Sbjct: 122917 aaacgtccattgctcatgcaatttattcttctca 122950
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>dbj|AK121100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069G03, full
            insert sequence
          Length = 1978

 Score =  198 bits (100), Expect = 1e-47
 Identities = 172/196 (87%)
 Strand = Plus / Minus

                                                                        
Query: 292  ccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactcgtaa 351
            |||||||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 1677 ccaactgatccctcaagcttcaggttcataagtgcatccatctcatgtgcaaactcgtaa 1618

                                                                        
Query: 352  ggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggccttttca 411
            ||||| |  || || || ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 1617 ggaagattctcgaaaacagccctgcagaatccaccaatcatcgctgcaacagccttttca 1558

                                                                        
Query: 412  tgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgtgctt 471
            || |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||||
Sbjct: 1557 tggtctatccccctttgttggaaataaaatagctggtcctcccctatttttgaagtgctt 1498

                            
Query: 472  gcttcatgctcaacac 487
            || |||||||||||||
Sbjct: 1497 gcctcatgctcaacac 1482



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                              
Query: 145  aaacgtccatttatcatgtaatttattcttctca 178
            |||||||||||  ||||| |||||||||||||||
Sbjct: 1782 aaacgtccattgctcatgcaatttattcttctca 1749
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>gb|AY103958.1| Zea mays PCO141591 mRNA sequence
          Length = 1691

 Score =  178 bits (90), Expect = 1e-41
 Identities = 171/198 (86%)
 Strand = Plus / Minus

                                                                        
Query: 288  ttagccaactgatccctccagcttcaggttcataagtgcatccacctcctgggcaaactc 347
            |||||||||||||||||| || ||||||||||| ||||| ||||||||||| || || ||
Sbjct: 1389 ttagccaactgatccctcgagtttcaggttcatgagtgcgtccacctcctgtgcgaattc 1330

                                                                        
Query: 348  gtaaggaaggtgttcaaagacggccctacagaatccaccgatcatggctgcaacggcctt 407
             || |||||||| || || || |  || ||||||||||| |||||||| ||||| |||||
Sbjct: 1329 atagggaaggtgctcgaaaacagatctgcagaatccaccaatcatggcggcaactgcctt 1270

                                                                        
Query: 408  ttcatgatctatccccctttgctgaaagtaaaacagctggtcctctccaattttggatgt 467
            ||||||||||| ||| |||||||| || ||||| ||||| ||||||||||||||||| ||
Sbjct: 1269 ttcatgatctacccctctttgctggaaataaaatagctgatcctctccaattttggaagt 1210

                              
Query: 468  gcttgcttcatgctcaac 485
            |||||| |||||||||||
Sbjct: 1209 gcttgcctcatgctcaac 1192
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>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome
          Length = 1995281

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                          
Query: 445     tggtcctctccaattttggatgtgcttgcttcatgctcaacac 487
               ||||||||||||||||| || ||  ||||||| ||||||||||
Sbjct: 1309697 tggtcctctccaattttagaggtagttgcttcgtgctcaacac 1309739
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>gb|AC140245.3| Mus musculus BAC clone RP23-293J3 from chromosome 18, complete sequence
          Length = 195082

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 313   aggttcataagtgcatccacct 334
             ||||||||||||||||||||||
Sbjct: 95114 aggttcataagtgcatccacct 95093
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>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome
          Length = 1709204

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 464   atgtgcttgcttcatgctcaa 484
             |||||||||||||||||||||
Sbjct: 79552 atgtgcttgcttcatgctcaa 79572
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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 99      gttctcttcgctgtcgtgggcaccg 123
               ||||||||||||| |||||||||||
Sbjct: 1945353 gttctcttcgctgccgtgggcaccg 1945329
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>ref|XM_756437.1| Ustilago maydis 521 hypothetical protein (UM05383.1) partial mRNA
          Length = 6060

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 107  cgctgtcgtgggcaccgtgac 127
            |||||||||||||||||||||
Sbjct: 4632 cgctgtcgtgggcaccgtgac 4612
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>ref|XM_567032.1| Cryptococcus neoformans var. neoformans JEC21 succinate-semialdehyde
            dehydrogenase [NAD(P)+] (CNA07130) partial mRNA
          Length = 1872

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 99   gttctcttcgctgtcgtgggcaccg 123
            ||||||||||||| |||||||||||
Sbjct: 1058 gttctcttcgctgccgtgggcaccg 1082
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>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence
          Length = 161160

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 62     agaaacaaaaatggacagaca 82
              |||||||||||||||||||||
Sbjct: 147308 agaaacaaaaatggacagaca 147328
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>emb|BX537928.1|HSM806046 Homo sapiens genomic DNA; cDNA DKFZp686C2092 (from clone
           DKFZp686C2092)
          Length = 4427

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 407 tttcatgatctatcccccttt 427
           |||||||||||||||||||||
Sbjct: 690 tttcatgatctatcccccttt 710
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>gb|AC092421.2| Homo sapiens chromosome 3 clone RP11-476A24, complete sequence
          Length = 160726

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 256   atgatatttcacatacttgtt 276
             |||||||||||||||||||||
Sbjct: 30150 atgatatttcacatacttgtt 30130
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>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 456    aattttggatgtgcttgcttcatgctcaa 484
              ||||||||||||  |||||||||||||||
Sbjct: 724261 aattttggatgttgttgcttcatgctcaa 724233
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>gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, complete sequence
          Length = 103709

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    agaaacaaaaatggacagaca 82
             |||||||||||||||||||||
Sbjct: 33424 agaaacaaaaatggacagaca 33404
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>gb|BC070011.1| Danio rerio zgc:73404, mRNA (cDNA clone MGC:85750 IMAGE:6525879),
           complete cds
          Length = 1768

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 167 ttattcttctcagtctcata 186
           ||||||||||||||||||||
Sbjct: 251 ttattcttctcagtctcata 232
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>gb|AC182692.2| Populus trichocarpa clone Pop1-44B2, complete sequence
          Length = 105327

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 458   ttttggatgtgcttgcttcatgct 481
             ||||||||||||||| ||||||||
Sbjct: 16284 ttttggatgtgcttgtttcatgct 16261
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>gb|AC145516.4| Mus musculus BAC clone RP24-157K17 from chromosome Y, complete sequence
          Length = 202847

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tctcatactgctgctgtaca 199
             ||||||||||||||||||||
Sbjct: 30556 tctcatactgctgctgtaca 30575
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>gb|AC123928.3| Mus musculus BAC clone RP24-390L8 from chromosome Y, complete sequence
          Length = 154303

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tctcatactgctgctgtaca 199
              ||||||||||||||||||||
Sbjct: 128688 tctcatactgctgctgtaca 128707
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>gb|AC145607.3| Mus musculus BAC clone RP24-270N6 from chromosome Y, complete sequence
          Length = 195706

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    tctcatactgctgctgtaca 199
              ||||||||||||||||||||
Sbjct: 150264 tctcatactgctgctgtaca 150245
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>gb|AC124250.11| Mus musculus chromosome 12, clone RP24-286P13, complete sequence
          Length = 213630

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    accagaaacaaaaatggaca 78
             ||||||||||||||||||||
Sbjct: 53902 accagaaacaaaaatggaca 53883
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>gb|AY376457.1| Meriones unguiculatus follicle stimulating hormone beta subunit
            (FSH-beta) mRNA, complete cds
          Length = 1640

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 72   atggacagacaaaagagaag 91
            ||||||||||||||||||||
Sbjct: 1472 atggacagacaaaagagaag 1453
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>gb|AC144627.2| Mus musculus BAC clone RP24-164A21 from chromosome Y, complete sequence
          Length = 135780

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tctcatactgctgctgtaca 199
             ||||||||||||||||||||
Sbjct: 40237 tctcatactgctgctgtaca 40256
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>gb|AC145563.2| Mus musculus BAC clone RP24-75L3 from chromosome Y, complete sequence
          Length = 204641

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tctcatactgctgctgtaca 199
             ||||||||||||||||||||
Sbjct: 81915 tctcatactgctgctgtaca 81934
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>gb|AC145566.4| Mus musculus BAC clone RP24-79A15 from chromosome Y, complete sequence
          Length = 163909

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tctcatactgctgctgtaca 199
             ||||||||||||||||||||
Sbjct: 44515 tctcatactgctgctgtaca 44534
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>gb|AC144857.3| Mus musculus BAC clone RP24-168C21 from chromosome Y, complete sequence
          Length = 156433

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    tctcatactgctgctgtaca 199
              ||||||||||||||||||||
Sbjct: 112531 tctcatactgctgctgtaca 112512
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>gb|AC132295.4| Mus musculus BAC clone RP24-325L5 from chromosome Y, complete sequence
          Length = 179299

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tctcatactgctgctgtaca 199
             ||||||||||||||||||||
Sbjct: 52661 tctcatactgctgctgtaca 52680
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>emb|BX928750.9| Zebrafish DNA sequence from clone DKEY-162P13 in linkage group 6,
              complete sequence
          Length = 178487

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ttattcttctcagtctcata 186
              ||||||||||||||||||||
Sbjct: 134002 ttattcttctcagtctcata 133983
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>gb|AC016827.7|ATAC016827 Arabidopsis thaliana chromosome III BAC F17A9 genomic sequence,
             complete sequence
          Length = 90142

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    aaaaatggacagacaaaagagaag 91
             ||||||||||||||| ||||||||
Sbjct: 61121 aaaaatggacagacagaagagaag 61098
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>gb|AC127678.9| Mus musculus BAC clone RP24-233M12 from chromosome 18, complete sequence
          Length = 157430

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 166    tttattcttctcagtctcatactg 189
              ||||||||||||||||||| ||||
Sbjct: 105921 tttattcttctcagtctcagactg 105898
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>emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J12 on chromosome 6q16.1-16.3
             Contains the 5' end of the MAP3K7 gene for
             mitogen-activated protein kinase kinase kinase 7 (TGF-beta
             activated kinase 1, TAK1) and two CpG islands, complete
             sequence
          Length = 86398

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   atcatgtaatttattcttct 176
             ||||||||||||||||||||
Sbjct: 51924 atcatgtaatttattcttct 51943
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>emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 map 22q22.3, complete
             sequence
          Length = 182974

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    gaaacaaaaatggacagaca 82
             ||||||||||||||||||||
Sbjct: 12702 gaaacaaaaatggacagaca 12721
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>emb|AL954248.1| Pan troglodytes chromosome 22 clone PTB-061A04 map 22q22.3, complete
              sequence
          Length = 162730

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     gaaacaaaaatggacagaca 82
              ||||||||||||||||||||
Sbjct: 157816 gaaacaaaaatggacagaca 157835
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>emb|BX323565.10| Zebrafish DNA sequence from clone DKEYP-95B12 in linkage group 16,
             complete sequence
          Length = 87826

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    agagaagcgccacggttctc 104
             ||||||||||||||||||||
Sbjct: 51995 agagaagcgccacggttctc 52014
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>gb|AC175526.4| Mus musculus BAC clone RP24-84E22 from chromosome y, complete sequence
          Length = 206636

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tctcatactgctgctgtaca 199
              ||||||||||||||||||||
Sbjct: 122945 tctcatactgctgctgtaca 122964
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>gb|AC175668.3| Mus musculus BAC clone RP24-319G11 from chromosome y, complete sequence
          Length = 160204

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tctcatactgctgctgtaca 199
              ||||||||||||||||||||
Sbjct: 101275 tctcatactgctgctgtaca 101294
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>gb|AC134557.4| Mus musculus chromosome UNK clone RP24-323H18, complete sequence
          Length = 170283

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tctcatactgctgctgtaca 199
              ||||||||||||||||||||
Sbjct: 115598 tctcatactgctgctgtaca 115617
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>gb|AC142129.4| Rattus norvegicus  BAC CH230-183M21 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 215272

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    atactgctgctgtacacatg 203
              ||||||||||||||||||||
Sbjct: 161462 atactgctgctgtacacatg 161443
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>dbj|AP006273.1| Papio hamadryas genomic DNA, BAC clone: RPCI41-30J10, chromosome 3,
             complete sequence
          Length = 183435

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    gaaacaaaaatggacagaca 82
             ||||||||||||||||||||
Sbjct: 39193 gaaacaaaaatggacagaca 39212
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>dbj|AP006271.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-155P15, chromosome 22,
             complete sequence
          Length = 129950

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    gaaacaaaaatggacagaca 82
             ||||||||||||||||||||
Sbjct: 58051 gaaacaaaaatggacagaca 58070
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>dbj|AP001754.1| Homo sapiens genomic DNA, chromosome 21q, section 98/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 63     gaaacaaaaatggacagaca 82
              ||||||||||||||||||||
Sbjct: 260557 gaaacaaaaatggacagaca 260576
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>emb|BX004829.12| Zebrafish DNA sequence from clone DKEY-29O15, complete sequence
          Length = 231581

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ttattcttctcagtctcata 186
              ||||||||||||||||||||
Sbjct: 178967 ttattcttctcagtctcata 178948
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>dbj|AP001067.1| Homo sapiens genomic DNA, chromosome 21, clone:KB1399C7, MX1-D21S171
             region, complete sequence
          Length = 148845

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    gaaacaaaaatggacagaca 82
             ||||||||||||||||||||
Sbjct: 30389 gaaacaaaaatggacagaca 30408


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,430,674
Number of Sequences: 3902068
Number of extensions: 4430674
Number of successful extensions: 88174
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88041
Number of HSP's gapped (non-prelim): 130
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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