>ISPH_SYNEL (Q8DK29) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 402

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 35/75 (46%), Positives = 46/75 (61%)
 Frame = -1

Query: 674 LQEIEELSGIPSYWIDSEQRIGPGNRIAYKLNHGEAY*GGKLATRKGLSQLELLPGASTP 495
           LQEI    GIPSY IDS  RIGPGNRI +K  H            + ++ + +  GASTP
Sbjct: 323 LQEIAIEHGIPSYHIDSADRIGPGNRIEHKPLHQNPTVAENWLPDRPIT-IGITSGASTP 381

Query: 494 DKVVEDTLHKVFEIK 450
           DKVVE+ L+K+F ++
Sbjct: 382 DKVVEEVLNKIFALR 396

>ISPH_SYNP6 (Q5N249) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 398

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 35/81 (43%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
 Frame = -1

Query: 674 LQEIEELSGIPSYWIDSEQRIGPGNRIAYKLNHGEAY*GGKLATRK-----GLSQLELLP 510
           LQEI     IPS+ ID+ +RIGPGNRI +K  H +      L T +     G   + +  
Sbjct: 323 LQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTD------LTTTEPWLPAGPLTIGITS 376

Query: 509 GASTPDKVVEDTLHKVFEIKR 447
           GASTPDKVVED + ++F+++R
Sbjct: 377 GASTPDKVVEDVIERLFDLQR 397

>ISPH_SYNY3 (Q55643) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 379

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
 Frame = -1

Query: 674 LQEIEELSGIPSYWIDSEQRIGPGNRIAYKLNHGEAY*GGKLATRKGLSQLELLPGASTP 495
           LQEI    GIPS  IDS  RIGPGNR+ +K   G+     +     G   + +  GASTP
Sbjct: 296 LQEIAVEHGIPSVHIDSGDRIGPGNRVEHK-PLGKDLEVLEPWLPAGKITVGVTSGASTP 354

Query: 494 DKVVEDTLHKVFEIKR-QEVLQVA 426
           DKVVE+ + K+  IK  Q VL++A
Sbjct: 355 DKVVEEVMKKILAIKEAQPVLEIA 378

>ISPH_ANASP (P58674) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 402

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
 Frame = -1

Query: 674 LQEIEELSGIPSYWIDSEQRIGPGNRIAYKLNHGEAY*GGKLATRK-----GLSQLELLP 510
           LQ+I +  G+PSY ID  +RI   N I ++  +GE      L T +     G   + +  
Sbjct: 323 LQQISQERGLPSYHIDVVERIKSINSIEHRQLNGE------LVTTENWLPAGKIVVGVTS 376

Query: 509 GASTPDKVVEDTLHKVFEIK 450
           GASTPDKVVED + K+F +K
Sbjct: 377 GASTPDKVVEDVIEKIFALK 396

>ISPH_GLOVI (Q7NG74) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 417

 Score = 43.1 bits (100), Expect = 8e-04
 Identities = 25/75 (33%), Positives = 40/75 (53%)
 Frame = -1

Query: 674 LQEIEELSGIPSYWIDSEQRIGPGNRIAYKLNHGEAY*GGKLATRKGLSQLELLPGASTP 495
           LQEI    G+PS+ ID   R+     I ++  H ++    K     G   + +  GASTP
Sbjct: 317 LQEIAVERGLPSFHIDGADRLVSAQFIEHRDLHSKSLVRTKNWLPAGEVTVGVTAGASTP 376

Query: 494 DKVVEDTLHKVFEIK 450
           D+VV + + ++FE+K
Sbjct: 377 DRVVAEVIARIFELK 391

>ISPH_PROMM (Q7V4T7) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 398

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 26/74 (35%), Positives = 40/74 (54%)
 Frame = -1

Query: 674 LQEIEELSGIPSYWIDSEQRIGPGNRIAYKLNHGEAY*GGKLATRKGLSQLELLPGASTP 495
           LQEI    GI S+ ID+ +RIG  N I +K    + +          +S + +  GASTP
Sbjct: 323 LQEIAISRGIRSFHIDTPERIGDNNSIQHKPLGEDLFIESNFLPAGSVS-VGITSGASTP 381

Query: 494 DKVVEDTLHKVFEI 453
           D+VVE  + K+ ++
Sbjct: 382 DRVVEHVIQKLIDL 395

>ISPH_PROMA (Q7VDS2) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 405

 Score = 38.1 bits (87), Expect = 0.025
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
 Frame = -1

Query: 674 LQEIEELSGIPSYWIDSEQRIGP-GNRIAYKLNHGEAY*GGKLATRKGLSQLELLPGAST 498
           LQEI    GI S+ ID+ +RIG   N I +K   G+          +G   + +  GAST
Sbjct: 323 LQEIALAKGIRSFHIDTPERIGEIENTITHK-PLGDDLRVESNFLPEGKINVGITSGAST 381

Query: 497 PDKVVEDTLHKVFEIKRQEVL 435
           PD++VE  + K+  +  ++++
Sbjct: 382 PDRIVEHVIQKLINLSERKLM 402

>ISPH_PROMP (Q7V329) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 398

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = -1

Query: 674 LQEIEELSGIPSYWIDSEQRIG-PGNRIAYKLNHGEAY*GGKLATRKGLSQLELLPGAST 498
           LQEI     I S+ ID+ +RI    N I +K    E     K     G  ++ +  GAST
Sbjct: 323 LQEIAINKNISSFHIDTPERISVKENSILHKPLKSEMVLK-KNFIPDGEIKVGITSGAST 381

Query: 497 PDKVVEDTLHKVFEIKR 447
           PDK+V D + K+  I +
Sbjct: 382 PDKIVADVIEKLIAITK 398

>ISPH_SYNPX (Q7U9K4) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 399

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -1

Query: 674 LQEIEELSGIPSYWIDSEQRI-GPGNRIAYK-LNHGEAY*GGKLATRKGLSQLELLPGAS 501
           LQEI    GI S+ ID+  R+    N I +K LN         L    G   + +  GAS
Sbjct: 323 LQEIALSRGIRSFHIDTPDRLDAQANAIEHKPLNENLRLESNFLPA--GPVTVGITSGAS 380

Query: 500 TPDKVVEDTLHKV 462
           TPD+ VE+ + K+
Sbjct: 381 TPDRAVEEVIEKL 393

>KIF4A_CHICK (Q90640) Chromosome-associated kinesin KIF4A (Chromokinesin)|
          Length = 1225

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = -3

Query: 516 TSGCLNSGQGCRGYATQGI*DQASRS---FAGCIDFQQNWSGDNNS*WPSK 373
           T  CL  G  CR  A+  +  Q+SRS   F  CID  Q    D NS + SK
Sbjct: 188 TVSCLEQGNNCRTVASTAMNSQSSRSHAIFTICID--QKKKNDKNSSFHSK 236

>ISPH_THETN (Q8RA76) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 288

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 539 KGLSQLELLPGASTPDKVVEDTLHKVFEIKRQE 441
           KG   + +  GASTPD V+E+ + K+  +K ++
Sbjct: 253 KGHDIIGITAGASTPDYVIEEVIEKIKSLKGED 285


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,935,221
Number of Sequences: 219361
Number of extensions: 2121178
Number of successful extensions: 5056
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5042
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)