ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41m04 |
|---|---|
| Clone Library Name | barley_pub |
>GALM_MOUSE (Q8K157) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 108 bits (270), Expect = 9e-24 Identities = 48/103 (46%), Positives = 74/103 (71%), Gaps = 1/103 (0%) Frame = -1 Query: 537 GYDHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAV 361 G+DHN+ L EK K A+++ ++S R L+++T PG+QFYT N+++G + GK GAV Sbjct: 241 GFDHNFCLKESKEK---KFCARVRHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKNGAV 297 Query: 360 YGKHAGVCLETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 232 Y KH+G+CLETQ +P+++NQ FP +++PG +Y HT F+FS Sbjct: 298 YPKHSGLCLETQNWPDSVNQPQFPPALLRPGEEYNHTTWFKFS 340
>GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 107 bits (268), Expect = 2e-23 Identities = 50/103 (48%), Positives = 72/103 (69%), Gaps = 1/103 (0%) Frame = -1 Query: 537 GYDHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAV 361 G+DHN+ L EK + A++ + S R L+++T PG+QFYT N+++G + GK GAV Sbjct: 241 GFDHNFCLKRSKEK---QFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAV 297 Query: 360 YGKHAGVCLETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 232 Y KH+G CLETQ +PNA+NQ +FP V+++PG +Y HT F FS Sbjct: 298 YPKHSGFCLETQNWPNAVNQPHFPPVLLKPGEEYNHTTWFVFS 340
>GALM_HUMAN (Q96C23) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| (BLOCK25 protein) Length = 342 Score = 107 bits (268), Expect = 2e-23 Identities = 49/103 (47%), Positives = 73/103 (70%), Gaps = 1/103 (0%) Frame = -1 Query: 537 GYDHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAV 361 G+DHN+ L EK+ A++ ++S R L+++T PG+QFYT N+++G + GK GAV Sbjct: 241 GFDHNFCLKGSKEKH---FCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAV 297 Query: 360 YGKHAGVCLETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 232 Y KH+G CLETQ +P+A+NQ FP V+++PG +Y HT F+FS Sbjct: 298 YPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFS 340
>GALM_RAT (Q66HG4) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 107 bits (266), Expect = 3e-23 Identities = 48/103 (46%), Positives = 72/103 (69%), Gaps = 1/103 (0%) Frame = -1 Query: 537 GYDHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAV 361 G+DHN+ L EK K A++ ++S R L+++T PG+QFYT N+++G + GK G V Sbjct: 241 GFDHNFCLKESKEK---KFCARVHHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKSGEV 297 Query: 360 YGKHAGVCLETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 232 Y KH+G CLETQ +P+A+NQ FP ++++PG +Y HT F+FS Sbjct: 298 YPKHSGFCLETQNWPDAVNQPQFPPILLRPGEEYNHTTWFKFS 340
>GALM_PONPY (Q5R8U1) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 105 bits (262), Expect = 8e-23 Identities = 48/103 (46%), Positives = 72/103 (69%), Gaps = 1/103 (0%) Frame = -1 Query: 537 GYDHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAV 361 G+DHN+ L EK+ A++ ++S R L+++T PG+QFY N+++G + GK GAV Sbjct: 241 GFDHNFCLKGSKEKH---FCARVHHAASGRVLEVYTTQPGVQFYMGNFLDGTLKGKNGAV 297 Query: 360 YGKHAGVCLETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 232 Y KH+G CLETQ +P+A+NQ FP V+++PG +Y HT F+FS Sbjct: 298 YPKHSGFCLETQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFS 340
>GALM_BOVIN (Q5EA79) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 105 bits (262), Expect = 8e-23 Identities = 48/103 (46%), Positives = 72/103 (69%), Gaps = 1/103 (0%) Frame = -1 Query: 537 GYDHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAV 361 G+DHN+ L EK + A++ + S R L+++T PG+QFYT N+++G + GK GA Sbjct: 241 GFDHNFCLKGSKEK---RFCARVHHAGSGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAG 297 Query: 360 YGKHAGVCLETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 232 Y KH+G CLETQ +P+A+NQ +FP V+++PG +Y HT F+FS Sbjct: 298 YPKHSGFCLETQSWPDAVNQPHFPPVLLKPGEEYDHTTWFKFS 340
>GALM_ACICA (P05149) Aldose 1-epimerase precursor (EC 5.1.3.3) (Mutarotase)| Length = 381 Score = 67.4 bits (163), Expect = 2e-11 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Frame = -1 Query: 537 GYDHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAV 361 GYD +V++ + L AA + D S RT+ + T P +Q YTA+++ G I G G + Sbjct: 277 GYDQTWVINQKSQGK-LNLAAIVVDPKSKRTMQVLTTEPSVQMYTADHLLGNIVGANGVL 335 Query: 360 YGKHAGVCLETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEF 235 Y + + LETQ FP++ NQ FPS + P Y +F+F Sbjct: 336 YRQADALALETQHFPDSPNQPTFPSTRLNPNQTYNSVTVFKF 377
>GALM_HAEIN (P31765) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 340 Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Frame = -1 Query: 537 GYDHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVY 358 GYDH+++++ K K L + +L++ T +Q YT NY+ G + G +Y Sbjct: 241 GYDHSFIVN----KAWQKPCVLLTSPTGDLSLEVRTSQAALQVYTGNYLAGTPTRNGELY 296 Query: 357 GKHAGVCLETQGFPNAINQTNFPSV--VVQPGAKYKHTMLFEF 235 +G+ LETQ P+ N + + + + G +Y F+F Sbjct: 297 ADFSGIALETQCLPDTPNHPEWQNYGGIQKAGGRYYQWTEFKF 339
>GAL10_KLULA (P09609) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 688 Score = 39.7 bits (91), Expect = 0.005 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = -1 Query: 474 KLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGFPNAINQTN 295 KL + + +++ T P Q YT +YV+ + K Y AG+C E + +A+N Sbjct: 610 KLSNEDAKLEVEVATTEPTFQVYTGDYVD-VKDK----YENRAGICCEPGRYIDAVNNPE 664 Query: 294 FPSVVVQP-GAKYKHTMLFEF 235 + S VV P G Y H + + F Sbjct: 665 WKSSVVLPAGETYGHKLSYTF 685
>RPOB_BACTN (Q8A469) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1270 Score = 30.4 bits (67), Expect = 3.3 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -1 Query: 519 VLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYV-NGITGK 373 VL + G+K A + D ++ LD WTD G+ Y Y+ +G TG+ Sbjct: 1100 VLGRAGKTLGVKFATPIFDGATMDDLDQWTDKAGLPRYCKTYLCDGGTGE 1149
>Y5G0_ENCCU (Q8STJ2) Hypothetical protein ECU05_1600/ECU11_0130| Length = 298 Score = 30.0 bits (66), Expect = 4.3 Identities = 16/60 (26%), Positives = 31/60 (51%) Frame = +3 Query: 75 FLNEIKSLSSDHYTFFYFSLVLQLDSFLLVVLFHSTTTAVAAIKLLALSLIMLRIQTTWC 254 FL+ + + S + ++V + +L V F AVA ++LL L+++ + TT+C Sbjct: 159 FLDSQQMMESQRAYYVSLTVVQMAFAIVLAVTFDYGNDAVAPLELLRALLLLMLVGTTFC 218
>GUX1_PHACH (P13860) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase) Length = 516 Score = 30.0 bits (66), Expect = 4.3 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Frame = -1 Query: 531 DHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTD-APGMQFYTANYVNGITGKGGAVYG 355 D NY G GLK + + L +W D A M + +NY T K + G Sbjct: 354 DTNYFAQHG----GLKQVGEALRTGMVLALSIWDDYAANMLWLDSNYP---TNKDPSTPG 406 Query: 354 KHAGVCLETQGFPNAINQTNFPSVVVQPGAKY 259 G C T G P I + + VV K+ Sbjct: 407 VARGTCATTSGVPAQIEAQSPNAYVVFSNIKF 438
>IRF8_MOUSE (P23611) Interferon regulatory factor 8 (IRF-8) (Interferon| consensus sequence-binding protein) (ICSBP) Length = 424 Score = 30.0 bits (66), Expect = 4.3 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -3 Query: 379 GQRRSCLREACRSMLGNPGVPQCHQPDQF-PVC 284 GQ + E CR L PG+P+ + PD PVC Sbjct: 217 GQATTTCLEGCRLSLSQPGLPKLYGPDGLEPVC 249
>COFG_HALMA (Q5UXN0) FO synthase subunit 1 (EC 2.5.1.-)| (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1) Length = 343 Score = 29.6 bits (65), Expect = 5.6 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -3 Query: 418 HAVLYRQLCEWHHGQRRSCLREACRSMLGNPGVPQCHQPDQ 296 + ++ QL EW H LREAC L +P + DQ Sbjct: 76 YTAVHDQLAEWGHDSIHEYLREACEIALEEGLLPHANPGDQ 116
>GR05A_DROME (Q9W497) Gustatory receptor for trehalose (Trehalose receptor)| Length = 444 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/46 (39%), Positives = 23/46 (50%) Frame = +3 Query: 99 SSDHYTFFYFSLVLQLDSFLLVVLFHSTTTAVAAIKLLALSLIMLR 236 SS H +FYFSL+ L V+LF S A L L L+ L+ Sbjct: 334 SSAHAVYFYFSLLFLLSRSTAVLLFVSAINDQAREPLRLLRLVPLK 379
>MDLB_BUCBP (Q89A96) Multidrug resistance-like ATP-binding protein mdlB (EC| 3.6.3.44) Length = 578 Score = 29.3 bits (64), Expect = 7.3 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = +3 Query: 66 EHYFLNEIKSLSSDHYTFFYFSL-VLQLDSFLLVVLFHSTTTAV 194 E F IK +S HY YF + +L+LDSFLL L + +T + Sbjct: 221 EQKFRKSIKKISISHY---YFRMKILKLDSFLLRPLLNFCSTLI 261
>GAL10_SCHPO (Q9HDU3) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 713 Score = 29.3 bits (64), Expect = 7.3 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Frame = -1 Query: 498 KNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGF 319 K LK+ ++ S L + T P Q YT + G + +G C+ET F Sbjct: 608 KYSLKNIVEVIHPSVPVKLVVSTTEPAFQLYTGD------GNDICEFQSRSGFCVETGRF 661 Query: 318 PNAINQTNF-PSVVVQPGAKY 259 NA+N + V+++ G Y Sbjct: 662 INALNNEKWSKQVILRKGEVY 682
>COAT_TYLCA (P36278) Coat protein (CP)| Length = 256 Score = 29.3 bits (64), Expect = 7.3 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +2 Query: 164 RFIPFYNYCSCSH*AAGIISNHAENSNNMVCLYFAPGCT 280 RF YN+C+ +H A NH EN+ + LY A CT Sbjct: 201 RFYKIYNHCTYNHQEAAKYENHTENA---LLLYMA--CT 234
>POLN_CHIKS (Q8JUX6) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3.6.1. Length = 2474 Score = 28.9 bits (63), Expect = 9.5 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +2 Query: 278 TTTDGKLVWLMALGNPWV 331 T T+GKLVW G+PW+ Sbjct: 950 TRTEGKLVWKTLSGDPWI 967
>POLN_CHIK3 (Q5XXP4) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)| [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-) (EC 2.7.7.-) (Nonstructural protein 1); Protease/triphosphatase/NTPase/helicase nsP2 (EC 3.4.22.-) (EC 3.1.3.33) (EC 3.6.1. Length = 2474 Score = 28.9 bits (63), Expect = 9.5 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +2 Query: 278 TTTDGKLVWLMALGNPWV 331 T T+GKLVW G+PW+ Sbjct: 950 TRTEGKLVWKTLSGDPWI 967
>LMNB2_HUMAN (Q03252) Lamin-B2| Length = 600 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%) Frame = +3 Query: 243 TTWCAYTSHQAAPPQTGNWSG*WHWGT-PGFPSILLHASRKQLRL 374 T W A +PP T W G WGT F ++L++A +++ + Sbjct: 510 TVWAAGAGVAHSPPSTLVWKGQSSWGTGESFRTVLVNADGEEVAM 554
>ISPG_BACFR (Q64N34) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 626 Score = 28.9 bits (63), Expect = 9.5 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 164 RFIPFYNYCSCSH*AAGIISNHAENSNNMVCLY 262 RF+PF N C +H A I NH S+ ++ Y Sbjct: 142 RFVPFLNICKENHTAVRIGVNHGSLSDRIMSRY 174
>ISPG_BACFN (Q5L7W2) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 626 Score = 28.9 bits (63), Expect = 9.5 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 164 RFIPFYNYCSCSH*AAGIISNHAENSNNMVCLY 262 RF+PF N C +H A I NH S+ ++ Y Sbjct: 142 RFVPFLNICKENHTAVRIGVNHGSLSDRIMSRY 174
>YHJK_ECOLI (P37649) Protein yhjK| Length = 651 Score = 28.9 bits (63), Expect = 9.5 Identities = 19/41 (46%), Positives = 24/41 (58%) Frame = +3 Query: 132 LVLQLDSFLLVVLFHSTTTAVAAIKLLALSLIMLRIQTTWC 254 LVLQ DSF + ST + + I LL LSLI L + +WC Sbjct: 128 LVLQADSFRMYKFVMSTLSTLVTIYLL-LSLI-LTVAISWC 166 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,025,160 Number of Sequences: 219361 Number of extensions: 1702466 Number of successful extensions: 4868 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4731 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4854 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
