ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41l18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472665.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 654 Score = 125 bits (63), Expect = 2e-25 Identities = 159/191 (83%) Strand = Plus / Minus Query: 404 atccacctttttcgttatctcatcaaccttatggattagtgcctcggctttctcggcgtc 463 ||||| || |||| |||||||||||||||| |||||||| ||||||||||||||||| || Sbjct: 606 atccaactctttctttatctcatcaaccttctggattagggcctcggctttctcggcatc 547 Query: 464 ctcctcgatcgcatcggcgacggtcttgatcctggatgctgcctccttgagcccttcatt 523 ||||| ||| ||||||| |||||||| ||| |||| || |||||||||| ||| || Sbjct: 546 atcctctatcacatcggctacggtcttaatcttggaggcaacctccttgagattttcgtt 487 Query: 524 ttcgggaaacgcctcggccacctcgccggcgactttctcggcagcttcggccaccgtgtc 583 ||||||| || ||||||| |||||||||||| ||||| | || || ||||||||||| Sbjct: 486 gccgggaaaagcgtcggccagctcgccggcgaccttctcagtcgcctccgccaccgtgtc 427 Query: 584 gattacctcga 594 || ||||||| Sbjct: 426 gaccacctcga 416
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 101 bits (51), Expect = 3e-18 Identities = 138/167 (82%) Strand = Plus / Minus Query: 428 aaccttatggattagtgcctcggctttctcggcgtcctcctcgatcgcatcggcgacggt 487 |||||| |||||||| ||||||||||||||||| || ||||| ||| ||||||| ||||| Sbjct: 27455 aaccttctggattagggcctcggctttctcggcatcatcctctatcacatcggctacggt 27396 Query: 488 cttgatcctggatgctgcctccttgagcccttcattttcgggaaacgcctcggccacctc 547 ||| ||| |||| || |||||||||| ||| || ||||||| || ||||||| ||| Sbjct: 27395 cttaatcttggaggcaacctccttgagattttcgttgccgggaaaagcgtcggccagctc 27336 Query: 548 gccggcgactttctcggcagcttcggccaccgtgtcgattacctcga 594 ||||||||| ||||| | || || ||||||||||||| ||||||| Sbjct: 27335 gccggcgaccttctcagtcgcctccgccaccgtgtcgaccacctcga 27289
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 101 bits (51), Expect = 3e-18 Identities = 138/167 (82%) Strand = Plus / Minus Query: 428 aaccttatggattagtgcctcggctttctcggcgtcctcctcgatcgcatcggcgacggt 487 |||||| |||||||| ||||||||||||||||| || ||||| ||| ||||||| ||||| Sbjct: 22423700 aaccttctggattagggcctcggctttctcggcatcatcctctatcacatcggctacggt 22423641 Query: 488 cttgatcctggatgctgcctccttgagcccttcattttcgggaaacgcctcggccacctc 547 ||| ||| |||| || |||||||||| ||| || ||||||| || ||||||| ||| Sbjct: 22423640 cttaatcttggaggcaacctccttgagattttcgttgccgggaaaagcgtcggccagctc 22423581 Query: 548 gccggcgactttctcggcagcttcggccaccgtgtcgattacctcga 594 ||||||||| ||||| | || || ||||||||||||| ||||||| Sbjct: 22423580 gccggcgaccttctcagtcgcctccgccaccgtgtcgaccacctcga 22423534 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 13292795 ctcctcctctttctcacttctccttc 13292820
>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and SNF2P genes, complete cds; nucellin pseudogene, complete sequence; putative transposase, phosphatidylinositol phosphatidylcholine transfer protein sec14 cytosolic-like protein, and phytochrome P450-like protein genes, complete cds; and unknown genes Length = 438828 Score = 67.9 bits (34), Expect = 4e-08 Identities = 37/38 (97%) Strand = Plus / Plus Query: 36 tgtactcctatatatatgcccatgagactcaagcaata 73 |||||||||||||||||||||||||| ||||||||||| Sbjct: 357876 tgtactcctatatatatgcccatgaggctcaagcaata 357913 Score = 60.0 bits (30), Expect = 9e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 36 tgtactcctatatatatgcccatgagactcaagcaata 73 |||||||||||||||||||||| ||| ||||||||||| Sbjct: 372690 tgtactcctatatatatgcccacgaggctcaagcaata 372727
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12 (WM1.12) genes, complete cds; transposons Ophelia2, Angela3s, and XJ3, complete sequence; LRR protein WM1.3 (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1, Jody, Angela, and XJ and Stowaway MITE, complete sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1) genes, complete cds; transposons XJ, XA, Angela, and Fred and WM1.11 gene, complete sequence; RPM1-like sequence and LRR protein WM1.10 (WM1.10) genes, complete cds; and transposon XJ, complete sequence Length = 198649 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 36 tgtactcctatatatatgcccatgagactcaagcaata 73 |||||||||||||||||||| | ||| ||||||||||| Sbjct: 125536 tgtactcctatatatatgccgacgagtctcaagcaata 125573 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Plus Query: 44 tatatatatgcccatgagactcaagcaata 73 |||||||||||||| ||| ||||||||||| Sbjct: 123319 tatatatatgcccacgaggctcaagcaata 123348
>gb|AC107230.8| Mus musculus chromosome 18, clone RP23-238L23, complete sequence Length = 192286 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 345 actcctcctctttctcccttctccttca 372 |||||||||||||| ||||||||||||| Sbjct: 100325 actcctcctctttcccccttctccttca 100352
>gb|AC098720.2| Mus musculus BAC clone RP23-2N16 from 5, complete sequence Length = 214995 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 347 tcctcctctttctcccttctcctt 370 |||||||||||||||||||||||| Sbjct: 77972 tcctcctctttctcccttctcctt 77995
>gb|AC109179.7| Mus musculus chromosome 18, clone RP23-382N7, complete sequence Length = 241644 Score = 48.1 bits (24), Expect = 0.033 Identities = 27/28 (96%) Strand = Plus / Plus Query: 345 actcctcctctttctcccttctccttca 372 |||||||||||||| ||||||||||||| Sbjct: 6140 actcctcctctttcccccttctccttca 6167
>gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, complete sequence Length = 198281 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 347 tcctcctctttctcccttctcctt 370 |||||||||||||||||||||||| Sbjct: 15627 tcctcctctttctcccttctcctt 15604
>gb|AC161602.4| Mus musculus BAC clone RP23-336I5 from chromosome 6, complete sequence Length = 224158 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcct 369 |||||||||||||||||||||||| Sbjct: 174727 ctcctcctctttctcccttctcct 174750
>gb|AC138620.4| Mus musculus BAC clone RP23-250E1 from 6, complete sequence Length = 209846 Score = 48.1 bits (24), Expect = 0.033 Identities = 24/24 (100%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctcct 369 |||||||||||||||||||||||| Sbjct: 149815 ctcctcctctttctcccttctcct 149792
>emb|AM180150.1| Kerivoula papillosa microsatellite DNA, locus Kpa33, clone KpaN1f09A Length = 606 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 347 tcctcctctttctcccttctccttcat 373 ||||||||| ||||||||||||||||| Sbjct: 268 tcctcctctctctcccttctccttcat 242
>gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0096A19 map near 50283S, complete sequence Length = 139969 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 90829 ctcctcctctttctcacttctccttc 90854 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 54344 ctcctcctctttctcacttctccttc 54369
>gb|AC141477.4| Mus musculus BAC clone RP23-386J14 from chromosome 10, complete sequence Length = 213720 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 340 ctacgactcctcctctttctcccttc 365 ||||| |||||||||||||||||||| Sbjct: 54618 ctacgtctcctcctctttctcccttc 54643
>gb|AC134923.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0030I07, complete sequence Length = 122733 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 50160 ctcctcctctttctcacttctccttc 50185
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 465 tcctcgatcgcatcggcgacgg 486 |||||||||||||||||||||| Sbjct: 70044 tcctcgatcgcatcggcgacgg 70023
>gb|AC135254.2| Homo sapiens X BAC RP11-98L4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 62121 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||| |||||||||||||||| Sbjct: 35569 ctcctcctccttctcccttctccttc 35544
>gb|AC118681.6| Mus musculus chromosome 16, clone RP23-473M11, complete sequence Length = 279112 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 217 catcattgtatatattgttata 238 |||||||||||||||||||||| Sbjct: 171255 catcattgtatatattgttata 171276
>gb|AC006507.21| Mus musculus strain 129S6/SvEvTac clone rp21-580p20 map 10, complete sequence Length = 185664 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 340 ctacgactcctcctctttctcccttc 365 ||||| |||||||||||||||||||| Sbjct: 29441 ctacgtctcctcctctttctcccttc 29416
>gb|AC140851.12| Mus musculus strain C57BL/6J clone rp23-358m4, complete sequence Length = 214913 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 340 ctacgactcctcctctttctcccttc 365 ||||| |||||||||||||||||||| Sbjct: 16867 ctacgtctcctcctctttctcccttc 16842
>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0023F01, complete sequence Length = 145009 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 1818 ctcctcctctttctcacttctccttc 1793
>gb|AC092948.6| Homo sapiens 3 BAC RP11-536F13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 144578 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 56 catgagactcaagcaatataat 77 |||||||||||||||||||||| Sbjct: 72397 catgagactcaagcaatataat 72376
>tpg|BK000817.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M228, complete sequence Length = 1295 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 366 ctcctcctctttctcacttctccttc 391
>tpg|BK000313.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M33, complete sequence Length = 1233 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 369 ctcctcctctttctcacttctccttc 394
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 26587902 ctcctcctctttctcacttctccttc 26587927 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 13853270 ctcctcctctttctcacttctccttc 13853295 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 13816785 ctcctcctctttctcacttctccttc 13816810
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 7619503 ctcctcctctttctcacttctccttc 7619528
>gb|DQ351213.1| Hordeum vulgare subsp. vulgare resistance protein (ABC1037) gene, complete cds Length = 25080 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 36 tgtactcctatatatatgcccatgag 61 |||||||||||||| ||||||||||| Sbjct: 11166 tgtactcctatatacatgcccatgag 11191
>dbj|AP002855.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0086P08 Length = 145312 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 30079 ctcctcctctttctcacttctccttc 30104
>dbj|AP001539.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0708G02 Length = 168976 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 168295 ctcctcctctttctcacttctccttc 168320
>emb|CR626961.6| Zebrafish DNA sequence from clone CH211-160F13 in linkage group 10, complete sequence Length = 167229 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 62795 ctcctcctctttctctcttctccttc 62820
>emb|AL032628.1|CEY38H6A Caenorhabditis elegans YAC Y38H6A, complete sequence Length = 24222 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 122 acgttttccaaaattttgtaac 143 |||||||||||||||||||||| Sbjct: 14812 acgttttccaaaattttgtaac 14791
>gb|AC122343.4| Mus musculus BAC clone RP23-359L18 from chromosome 7, complete sequence Length = 228892 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctc 367 |||||||||||||||||||||| Sbjct: 172116 ctcctcctctttctcccttctc 172137
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 26913166 ctcctcctctttctcacttctccttc 26913191 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 13935272 ctcctcctctttctcacttctccttc 13935297 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 13898787 ctcctcctctttctcacttctccttc 13898812
>emb|AL662966.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035B13, complete sequence Length = 145234 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 64894 ctcctcctctttctcacttctccttc 64919
>emb|CR394538.6| Zebrafish DNA sequence from clone DKEY-189I22 in linkage group 10, complete sequence Length = 155394 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||||||||| |||||||||| Sbjct: 70205 ctcctcctctttctctcttctccttc 70180
>emb|AL691501.15| Mouse DNA sequence from clone RP23-220M11 on chromosome 4, complete sequence Length = 176069 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 171 agagccaaatgataatgacaaa 192 |||||||||||||||||||||| Sbjct: 21368 agagccaaatgataatgacaaa 21347
>gb|AC166834.2| Mus musculus BAC clone RP23-158D24 from chromosome 7, complete sequence Length = 212016 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctc 367 |||||||||||||||||||||| Sbjct: 139120 ctcctcctctttctcccttctc 139099
>emb|AL731703.16| Mouse DNA sequence from clone RP23-100O16 on chromosome 2, complete sequence Length = 187541 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctc 367 |||||||||||||||||||||| Sbjct: 54022 ctcctcctctttctcccttctc 54001
>gb|AC091981.4| Homo sapiens chromosome 5 clone RP11-549L3, complete sequence Length = 187685 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||| |||||||||||||||| Sbjct: 128960 ctcctcctccttctcccttctccttc 128985
>gb|AC135252.2| Homo sapiens X BAC RP11-196I10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 62101 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctccttc 371 ||||||||| |||||||||||||||| Sbjct: 26557 ctcctcctccttctcccttctccttc 26582
>gb|AC122829.4| Mus musculus BAC clone RP23-224F12 from 10, complete sequence Length = 155915 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 agagccaaatgataatgacaa 191 ||||||||||||||||||||| Sbjct: 24611 agagccaaatgataatgacaa 24591
>emb|AL683807.22| Human DNA sequence from clone RP13-297E16 on chromosome X Contains the DXYS155E gene for DNA segment on chromosome X and Y (unique) 155 expressed sequence (XE7, XE7Y), the ASMT gene for acetylserotonin O-methyltransferase (ASMTY, HIOMT, HIOMTY), three novel genes and three CpG islands, complete sequence Length = 189825 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcctt 370 |||||||||||||||||| |||||| Sbjct: 153241 ctcctcctctttctccctcctcctt 153265 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcct 369 |||||||||||||||||| ||||| Sbjct: 153225 ctcctcctctttctccctcctcct 153248
>emb|AL611922.7| Human DNA sequence from clone RP11-633N4 on chromosome 9, complete sequence Length = 176612 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 347 tcctcctctttctcccttctccttc 371 ||||||||||||| ||||||||||| Sbjct: 167277 tcctcctctttcttccttctccttc 167301
>emb|AL445585.8| Human DNA sequence from clone RP11-54A3 on chromosome 13, complete sequence Length = 161310 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 tttccaaaattttgtaacaaa 146 ||||||||||||||||||||| Sbjct: 74098 tttccaaaattttgtaacaaa 74118
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 531 aacgcctcggccacctcgccggcga 555 ||||||||||||||||| ||||||| Sbjct: 1990 aacgcctcggccacctccccggcga 2014
>emb|AL732632.4| Zebrafish DNA sequence from clone CH211-140K5 in linkage group 14 Contains two novel retroelements, the 5' part of a novel gene similar to GRIN3A (ionotropic glutamate receptor, N-methyl-D-aspartate 3A (GRIN3A) and four CpG islands, complete sequence Length = 159482 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 347 tcctcctctttctcccttctccttc 371 |||||||||||||| |||||||||| Sbjct: 7045 tcctcctctttctctcttctccttc 7069
>gb|AE010214.1| Pyrococcus furiosus DSM 3638, section 89 of 173 of the complete genome Length = 11615 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 409 cctttttcgttatctcatcaacctt 433 |||||||| |||||||||||||||| Sbjct: 10181 cctttttcattatctcatcaacctt 10205
>gb|AC154732.3| Mus musculus BAC clone RP24-380F18 from chromosome 12, complete sequence Length = 172458 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcctt 370 |||||||||||||||||| |||||| Sbjct: 152324 ctcctcctctttctccctcctcctt 152348
>gb|AC092645.2| Homo sapiens BAC clone RP11-399B17 from 2, complete sequence Length = 147390 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 cctctttctcccttctccttc 371 ||||||||||||||||||||| Sbjct: 17066 cctctttctcccttctccttc 17046
>gb|AC157689.2| Xenopus tropicalis clone ISB1-171O22, complete sequence Length = 80070 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 tcctctttctcccttctcctt 370 ||||||||||||||||||||| Sbjct: 41563 tcctctttctcccttctcctt 41583
>emb|CT030142.10| Mouse DNA sequence from clone RP23-422H22 on chromosome 12, complete sequence Length = 203796 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctcctt 370 |||||||||||||||||| |||||| Sbjct: 118399 ctcctcctctttctccctcctcctt 118375
>gb|AF393505.1| Mus musculus potential meiotic DNA repair locus Length = 17157 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tcctcctctttctcccttct 366 |||||||||||||||||||| Sbjct: 2920 tcctcctctttctcccttct 2939
>gb|AC114983.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0032H19 map E30331S, complete sequence Length = 164820 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctcct 369 ||||||||||||||| |||||||| Sbjct: 116122 ctcctcctctttctcacttctcct 116099
>gb|AC166643.7| Mus musculus chromosome 18, clone RP24-241J8, complete sequence Length = 173501 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 aaatatatatacgttttcca 131 |||||||||||||||||||| Sbjct: 69343 aaatatatatacgttttcca 69362
>gb|AC160962.2| Mus musculus BAC clone RP24-308N16 from chromosome 13, complete sequence Length = 147866 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 caagagccaaatgataatga 188 |||||||||||||||||||| Sbjct: 34527 caagagccaaatgataatga 34508
>ref|XM_462070.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G13134g) partial mRNA Length = 1599 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 agccaaatgataatgacaaa 192 |||||||||||||||||||| Sbjct: 146 agccaaatgataatgacaaa 165
>gb|AC182722.2| Populus trichocarpa clone Pop1-92L17, complete sequence Length = 97881 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tcctcctctttctcccttct 366 |||||||||||||||||||| Sbjct: 84767 tcctcctctttctcccttct 84748
>gb|AC132322.3| Mus musculus BAC clone RP24-262F3 from chromosome 13, complete sequence Length = 155179 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttc 365 |||||||||||||||||||| Sbjct: 120756 ctcctcctctttctcccttc 120775 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttc 365 |||||||||||||||||||| Sbjct: 120511 ctcctcctctttctcccttc 120530
>gb|AC133954.3| Mus musculus BAC clone RP23-154C17 from chromosome 5, complete sequence Length = 199991 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 attgtatatattgttatata 240 |||||||||||||||||||| Sbjct: 883 attgtatatattgttatata 864
>gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, complete sequence Length = 179157 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctcct 369 ||||||||||| |||||||||||| Sbjct: 94933 ctcctcctcttcctcccttctcct 94910
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcct 369 ||||||||||||||| |||||||| Sbjct: 17447621 ctcctcctctttctcacttctcct 17447644
>gb|AC131178.11| Mus musculus chromosome 15, clone RP23-376I10, complete sequence Length = 170753 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcct 369 ||||||||||| |||||||||||| Sbjct: 93398 ctcctcctcttcctcccttctcct 93421
>emb|CR931798.8| Mouse DNA sequence from clone RP23-89A4 on chromosome 4, complete sequence Length = 83980 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcct 369 ||||||||||||||||||| |||| Sbjct: 64761 ctcctcctctttctcccttttcct 64784
>gb|AC132392.3| Mus musculus BAC clone RP23-386F15 from chromosome 7, complete sequence Length = 208499 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 cctcctctttctcccttctc 367 |||||||||||||||||||| Sbjct: 85638 cctcctctttctcccttctc 85619
>gb|AC091611.5| Homo sapiens chromosome 1 clone RP11-369L17, complete sequence Length = 198486 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 attgtatatattgttatata 240 |||||||||||||||||||| Sbjct: 92007 attgtatatattgttatata 92026
>gb|AC129313.4| Mus musculus BAC clone RP23-342K4 from chromosome 8, complete sequence Length = 215576 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 aacaaaaccaaaactcatga 160 |||||||||||||||||||| Sbjct: 160097 aacaaaaccaaaactcatga 160116
>gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, complete sequence Length = 257003 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tcctcctctttctcccttct 366 |||||||||||||||||||| Sbjct: 198053 tcctcctctttctcccttct 198072
>gb|AC116323.6| Mus musculus BAC clone RP23-281F3 from 8, complete sequence Length = 182204 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 347 tcctcctctttctcccttct 366 |||||||||||||||||||| Sbjct: 139595 tcctcctctttctcccttct 139576
>emb|CR683700.2|CNS0FQHS Tetraodon nigroviridis full-length cDNA Length = 858 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gctttctcggcgtcctcctc 469 |||||||||||||||||||| Sbjct: 390 gctttctcggcgtcctcctc 371
>emb|CR662625.2|CNS0FA93 Tetraodon nigroviridis full-length cDNA Length = 598 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 gctttctcggcgtcctcctc 469 |||||||||||||||||||| Sbjct: 130 gctttctcggcgtcctcctc 111
>gb|AC164955.2| Mus musculus BAC clone RP24-233H9 from chromosome 9, complete sequence Length = 221907 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 tcattgtatatattgttata 238 |||||||||||||||||||| Sbjct: 167622 tcattgtatatattgttata 167603
>emb|BX664735.7| Human DNA sequence from clone RP11-665E4 on chromosome 9 Contains the 5' end of the gene for a novel protein similar to contactin associated protein-like 3 (CNTNAP3) and a CpG island, complete sequence Length = 187005 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 220 cattgtatatattgttatatacactctg 247 |||| |||| |||||||||||||||||| Sbjct: 183152 cattttataaattgttatatacactctg 183179
>emb|BX649569.5| Human DNA sequence from clone RP11-204I2 on chromosome 9 Contains part of the gene for a novel protein similar to contactin associated protein-like 3 (CNTNAP3), complete sequence Length = 162657 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 220 cattgtatatattgttatatacactctg 247 |||| |||| |||||||||||||||||| Sbjct: 74857 cattttataaattgttatatacactctg 74830
>emb|BX088645.7| Human DNA sequence from clone RP11-74L19 on chromosome 9 Contains a pseudogene similar to part of contactin associated protein family, a novel pseudogene and a CpG island, complete sequence Length = 152623 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 220 cattgtatatattgttatatacactctg 247 |||| |||| |||||||||||||||||| Sbjct: 60421 cattttataaattgttatatacactctg 60394
>emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chromosome 1 Contains the 5' end of a novel pseudogene and a guanylate binding protein pseudogene, complete sequence Length = 68235 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 347 tcctcctctttctcccttctcctt 370 ||||||||||||| |||||||||| Sbjct: 62649 tcctcctctttcttccttctcctt 62672
>emb|AL365192.22| Human DNA sequence from clone RP3-421H19 on chromosome 6 Contains the 5' part of a novel protein similar to ribosomal protein L14 (L14p/L23e), a novel gene, the CAPN11 gene for calpain 11 and one CpG island, complete sequence Length = 89351 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 ctctttctcccttctccttc 371 |||||||||||||||||||| Sbjct: 52910 ctctttctcccttctccttc 52929
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 545 ctcgccggcgactttctcggcagcttcg 572 |||| |||||||||||||||| |||||| Sbjct: 1717808 ctcggcggcgactttctcggcggcttcg 1717781
>emb|AL162501.11| Human DNA sequence from clone RP11-138L21 on chromosome 9 Contains the 5' end of the CNTNAP3 gene for a contactin associated protein-like 3 and two CpG islands, complete sequence Length = 118564 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 220 cattgtatatattgttatatacactctg 247 |||| |||| |||||||||||||||||| Sbjct: 59318 cattttataaattgttatatacactctg 59345
>emb|AL162233.14| Human DNA sequence from clone RP11-292B8 on chromosome 9 Contains a pseudogene similar to part of contactin associated protein-like 3 (CNTNAP3), an RNA binding motif protein 17 (RBM17) pseudogene and a CpG island, complete sequence Length = 179833 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 220 cattgtatatattgttatatacactctg 247 |||| |||| |||||||||||||||||| Sbjct: 67547 cattttataaattgttatatacactctg 67574
>emb|AL021326.1|HS124C6 Human DNA sequence from clone RP1-124C6 on chromosome 6q21 Contains a putative novel gene, complete sequence Length = 103567 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 cctctttctcccttctcctt 370 |||||||||||||||||||| Sbjct: 78955 cctctttctcccttctcctt 78974
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 agccaaatgataatgacaaa 192 |||||||||||||||||||| Sbjct: 1008308 agccaaatgataatgacaaa 1008289
>emb|AL929353.1|PFA929353 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4 Length = 343050 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 attgtatatattgttatata 240 |||||||||||||||||||| Sbjct: 57324 attgtatatattgttatata 57305
>emb|AL596084.13| Mouse DNA sequence from clone RP23-196B5 on chromosome 11 Contains the Pank3 gene for pantothenate kinase 3, a pseudogene similar to part of ribosomal protein L7a (Rpl7a), a pseudogene similar to part of fibrillarin (Fbl), the Rars gene for arginyl-tRNA synthetase, the 3' end of the gene for a novel protein similar to human KIBRA and two CpG islands, complete sequence Length = 181103 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcct 369 ||||||||||||||||| |||||| Sbjct: 81975 ctcctcctctttctcccctctcct 81998
>emb|AL161551.2|ATCHRIV51 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 51 Length = 197114 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aaaaccaaaactcatgacta 163 |||||||||||||||||||| Sbjct: 175134 aaaaccaaaactcatgacta 175153
>emb|AL024486.1|ATT16H5 Arabidopsis thaliana DNA chromosome 4, BAC clone T16H5 (ESSAII project) Length = 95417 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aaaaccaaaactcatgacta 163 |||||||||||||||||||| Sbjct: 95052 aaaaccaaaactcatgacta 95071
>emb|AL021637.2|ATF18F4 Arabidopsis thaliana DNA chromosome 4, BAC clone F18F4 (ESSA project) Length = 99725 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aaaaccaaaactcatgacta 163 |||||||||||||||||||| Sbjct: 42 aaaaccaaaactcatgacta 61
>emb|BX629348.9| Zebrafish DNA sequence from clone DKEY-4E7 in linkage group 9, complete sequence Length = 134366 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 tgtatatattgttatataca 242 |||||||||||||||||||| Sbjct: 117911 tgtatatattgttatataca 117930
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 533 cgcctcggccacctcgccggcgac 556 ||||||||||| |||||||||||| Sbjct: 4036821 cgcctcggccaactcgccggcgac 4036798
>gb|AY093062.1| Arabidopsis thaliana putative serine carboxypeptidase I (At2g22980) mRNA, complete cds Length = 1851 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 catcattgtatatattgtta 236 |||||||||||||||||||| Sbjct: 852 catcattgtatatattgtta 833
>gb|AC004786.3| Arabidopsis thaliana chromosome 2 clone T20K9 map CIC06C07, complete sequence Length = 86686 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 catcattgtatatattgtta 236 |||||||||||||||||||| Sbjct: 75944 catcattgtatatattgtta 75925
>gb|AC004401.3| Arabidopsis thaliana chromosome 2 clone F21P24 map CIC06C07, complete sequence Length = 94038 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 catcattgtatatattgtta 236 |||||||||||||||||||| Sbjct: 11802 catcattgtatatattgtta 11783
>gb|AC027141.7| Homo sapiens chromosome 18, clone RP11-29E21, complete sequence Length = 146286 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 actcctcctctttctccctt 364 |||||||||||||||||||| Sbjct: 80490 actcctcctctttctccctt 80471
>emb|BX470198.7| Zebrafish DNA sequence from clone DKEY-18G6 in linkage group 5, complete sequence Length = 217036 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 tcatcattgtatatattgttatat 239 ||||||||||||||||||| |||| Sbjct: 7480 tcatcattgtatatattgtaatat 7457
>gb|AC010374.6| Homo sapiens chromosome 5 clone CTD-2057J6, complete sequence Length = 117372 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 attgtatatattgttatata 240 |||||||||||||||||||| Sbjct: 83282 attgtatatattgttatata 83301
>gb|AC154358.2| Mus musculus BAC clone RP23-173M16 from chromosome 13, complete sequence Length = 193594 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 ctctttctcccttctccttc 371 |||||||||||||||||||| Sbjct: 135466 ctctttctcccttctccttc 135485
>gb|AC117725.23| Mus musculus chromosome 5, clone RP24-439K18, complete sequence Length = 180960 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 attgtatatattgttatata 240 |||||||||||||||||||| Sbjct: 61579 attgtatatattgttatata 61598
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 cctcggccacctcgccggcg 554 |||||||||||||||||||| Sbjct: 20998533 cctcggccacctcgccggcg 20998552
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcct 369 ||||||||||||||| |||||||| Sbjct: 17441162 ctcctcctctttctcacttctcct 17441185
>gb|AC160227.3| Loxodonta africana clone VMRC15-528D5, complete sequence Length = 106354 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 actcctatatatatgcccatgaga 62 ||||||||||||||||||| |||| Sbjct: 24582 actcctatatatatgcccaagaga 24605
>gb|AC148038.3| Ovis aries clone CH243-361I2, complete sequence Length = 198973 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 acttatcatcattgtatatattgt 234 |||| ||||||||||||||||||| Sbjct: 85713 acttttcatcattgtatatattgt 85690
>gb|AC080014.13| Homo sapiens 3 BAC RP11-301G23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163111 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 348 cctcctctttctcccttctc 367 |||||||||||||||||||| Sbjct: 86883 cctcctctttctcccttctc 86864
>gb|AC069410.10| Homo sapiens 3 BAC RP11-32M21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176924 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 attttgtaacaaaaccaaaa 153 |||||||||||||||||||| Sbjct: 141333 attttgtaacaaaaccaaaa 141314
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 533 cgcctcggccacctcgccggcgac 556 |||| ||||||||||||||||||| Sbjct: 1834724 cgccacggccacctcgccggcgac 1834701
>gb|AC112512.6| Homo sapiens 3 BAC RP11-717D12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176910 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 atatatacgttttccaaaat 135 |||||||||||||||||||| Sbjct: 167515 atatatacgttttccaaaat 167496
>dbj|AP003863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1058_A12 Length = 152269 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 535 cctcggccacctcgccggcg 554 |||||||||||||||||||| Sbjct: 41832 cctcggccacctcgccggcg 41851
>dbj|AB075955.1| Ixodes holocyclus mitochondrial DNA, complete sequence Length = 15007 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 tgtatatattgttatataca 242 |||||||||||||||||||| Sbjct: 8574 tgtatatattgttatataca 8555
>gb|AC155075.10| Mus musculus chromosome 5, clone RP24-82B9, complete sequence Length = 236335 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 atgagactcaagcaatataa 76 |||||||||||||||||||| Sbjct: 192592 atgagactcaagcaatataa 192611
>emb|CT573072.1| Kuenenia stuttgartiensis genome fragment KUST_D (4 of 5) Length = 896449 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 402 gaatccacctttttcgttat 421 |||||||||||||||||||| Sbjct: 236946 gaatccacctttttcgttat 236965
>gb|AC162375.2| Mus musculus BAC clone RP24-466F1 from chromosome 9, complete sequence Length = 164119 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctcct 369 ||||||||| |||||||||||||| Sbjct: 131627 ctcctcctccttctcccttctcct 131604 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctcct 369 ||||||||| |||||||||||||| Sbjct: 131596 ctcctcctccttctcccttctcct 131573
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 533 cgcctcggccacctcgccgg 552 |||||||||||||||||||| Sbjct: 3249119 cgcctcggccacctcgccgg 3249138
>emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, complete sequence Length = 137155 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 346 ctcctcctctttctcccttctcct 369 |||||||||||||||||| ||||| Sbjct: 13227 ctcctcctctttctccctcctcct 13250
>gb|AC124527.5| Mus musculus BAC clone RP23-411B11 from 1, complete sequence Length = 189288 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 attgtatatattgttatata 240 |||||||||||||||||||| Sbjct: 118167 attgtatatattgttatata 118148
>emb|BX005035.9| Human DNA sequence from clone RP11-133G22 on chromosome 9, complete sequence Length = 146143 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 220 cattgtatatattgttatatacactctg 247 |||| |||| |||||||||||||||||| Sbjct: 71358 cattttataaattgttatatacactctg 71385
>emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chromosome 1, complete sequence Length = 101854 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 347 tcctcctctttctcccttctcctt 370 ||||||||||||| |||||||||| Sbjct: 47317 tcctcctctttcttccttctcctt 47294
>emb|AL671975.12| Mouse DNA sequence from clone RP23-25O15 on chromosome X, complete sequence Length = 231530 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 ctcctcctctttctcccttctcct 369 |||||||||||||| ||||||||| Sbjct: 176303 ctcctcctctttcttccttctcct 176280
>gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, complete sequence Length = 194160 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 116 atatatacgttttccaaaat 135 |||||||||||||||||||| Sbjct: 63065 atatatacgttttccaaaat 63046 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,127,441 Number of Sequences: 3902068 Number of extensions: 6127441 Number of successful extensions: 144495 Number of sequences better than 10.0: 116 Number of HSP's better than 10.0 without gapping: 119 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 143280 Number of HSP's gapped (non-prelim): 1212 length of query: 594 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 571 effective length of database: 17,143,297,704 effective search space: 9788822988984 effective search space used: 9788822988984 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
