>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                            
Query: 317      gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 360
                ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 10942911 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 10942954



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 69/82 (84%)
 Strand = Plus / Plus

                                                                            
Query: 443      ggaaggcttggcacagggttgnctggagtcgagttgtggccattcacgagccaacttgat 502
                |||||||||||  |||| ||| |||| || ||||  |||||||| || ||||| ||||| 
Sbjct: 10943145 ggaaggcttggagcaggattgtctggcgtagagtcatggccattgacaagccagcttgag 10943204

                                      
Query: 503      agcttcttcctantgcctgatc 524
                |||||||||||| |||||||||
Sbjct: 10943205 agcttcttcctagtgcctgatc 10943226

>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05,
             from chromosome 3, complete sequence
          Length = 127348

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                         
Query: 317   gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 360
             ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 38118 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 38075



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 69/82 (84%)
 Strand = Plus / Minus

                                                                         
Query: 443   ggaaggcttggcacagggttgnctggagtcgagttgtggccattcacgagccaacttgat 502
             |||||||||||  |||| ||| |||| || ||||  |||||||| || ||||| ||||| 
Sbjct: 37884 ggaaggcttggagcaggattgtctggcgtagagtcatggccattgacaagccagcttgag 37825

                                   
Query: 503   agcttcttcctantgcctgatc 524
             |||||||||||| |||||||||
Sbjct: 37824 agcttcttcctagtgcctgatc 37803

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Plus

                                                            
Query: 317      gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 360
                ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 10941012 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 10941055



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 69/82 (84%)
 Strand = Plus / Plus

                                                                            
Query: 443      ggaaggcttggcacagggttgnctggagtcgagttgtggccattcacgagccaacttgat 502
                |||||||||||  |||| ||| |||| || ||||  |||||||| || ||||| ||||| 
Sbjct: 10941246 ggaaggcttggagcaggattgtctggcgtagagtcatggccattgacaagccagcttgag 10941305

                                      
Query: 503      agcttcttcctantgcctgatc 524
                |||||||||||| |||||||||
Sbjct: 10941306 agcttcttcctagtgcctgatc 10941327

>dbj|AK072741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023136H15, full
            insert sequence
          Length = 3559

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 317  gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 360
            ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 3254 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 3211



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 107/132 (81%)
 Strand = Plus / Minus

                                                                        
Query: 393  tctcaaaaccacaagaatttaccttgggaaggatgaaatggtcggcannaggaaggcttg 452
            |||| ||||| || |||||||| || |||| ||||||||| |  |||   ||||||||||
Sbjct: 3175 tctcgaaaccgcatgaatttactttaggaatgatgaaatgctgcgcagatggaaggcttg 3116

                                                                        
Query: 453  gcacagggttgnctggagtcgagttgtggccattcacgagccaacttgatagcttcttcc 512
            |  |||| ||| |||| || ||||  |||||||| || ||||| ||||| ||||||||||
Sbjct: 3115 gagcaggattgtctggcgtagagtcatggccattgacaagccagcttgagagcttcttcc 3056

                        
Query: 513  tantgcctgatc 524
            || |||||||||
Sbjct: 3055 tagtgcctgatc 3044

>dbj|AK062228.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D02, full
            insert sequence
          Length = 1433

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 42/44 (95%)
 Strand = Plus / Minus

                                                        
Query: 317  gccttcaggaagttgtcgaaggggctggccggtggaagcttcac 360
            ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1072 gccttcaggaagttgtcgaaggggctggcgggtgggagcttcac 1029



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 107/132 (81%)
 Strand = Plus / Minus

                                                                       
Query: 393 tctcaaaaccacaagaatttaccttgggaaggatgaaatggtcggcannaggaaggcttg 452
           |||| ||||| || |||||||| || |||| ||||||||| |  |||   ||||||||||
Sbjct: 993 tctcgaaaccgcatgaatttactttaggaatgatgaaatgctgcgcagatggaaggcttg 934

                                                                       
Query: 453 gcacagggttgnctggagtcgagttgtggccattcacgagccaacttgatagcttcttcc 512
           |  |||| ||| |||| || ||||  |||||||| || ||||| ||||| ||||||||||
Sbjct: 933 gagcaggattgtctggcgtagagtcatggccattgacaagccagcttgagagcttcttcc 874

                       
Query: 513 tantgcctgatc 524
           || |||||||||
Sbjct: 873 tagtgcctgatc 862

>gb|AC112908.3| Homo sapiens 3 BAC RP11-657F23 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 111304

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 112  agtacataatactagtagatac 133
            ||||||||||||||||||||||
Sbjct: 5447 agtacataatactagtagatac 5426

>ref|XM_750604.1| Aspergillus fumigatus Af293 serine/threonin protein kinase
           (Afu2g13640) partial mRNA
          Length = 2649

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 485 ttcacgagccaacttgatagcttct 509
           |||||| ||||||||||||||||||
Sbjct: 99  ttcacgtgccaacttgatagcttct 75

>gb|AC007866.11| Trypanosoma brucei chromosome 2 clone RPCI93-36E18, complete sequence
          Length = 110159

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    acatacgctacaacaactga 163
              ||||||||||||||||||||
Sbjct: 102889 acatacgctacaacaactga 102870

>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 144     acatacgctacaacaactga 163
               ||||||||||||||||||||
Sbjct: 1186678 acatacgctacaacaactga 1186659

>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 254     atggttagctcagctgtgat 273
               ||||||||||||||||||||
Sbjct: 2355533 atggttagctcagctgtgat 2355514

>gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome 1, complete sequence
          Length = 231896

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    gagtacataatactagtaga 130
              ||||||||||||||||||||
Sbjct: 129280 gagtacataatactagtaga 129261

>ref|XM_946664.1| Trypanosoma brucei TREU927 variant surface glycoprotein
           (Tb927.2.6410) partial mRNA
          Length = 1431

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 acatacgctacaacaactga 163
           ||||||||||||||||||||
Sbjct: 811 acatacgctacaacaactga 830

>emb|AL121990.34|HSDJ613A2 Human DNA sequence from clone RP4-613A2 on chromosome 1q42.11-42.3
             Contains the 5' end of the NUP133 gene, a novel gene, the
             ABCB10 gene for ATP-binding cassette, sub-family B
             (MDR/TAP), member 10, a high-mobility group nucleosomal
             binding domain 2 (HMGN2) pseudogene, the TAF5L gene for
             TAF5-like RNA polymerase II, p300/CBP-associated factor
             (PCAF)-associated factor, 65kDa, the 5' end of a novel
             gene (KIAA0133) and three CpG islands, complete sequence
          Length = 147913

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   gttcagtgatagatactaca 235
             ||||||||||||||||||||
Sbjct: 47219 gttcagtgatagatactaca 47200

>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 180     gccagccaggcggccaagtc 199
               ||||||||||||||||||||
Sbjct: 1627979 gccagccaggcggccaagtc 1627960

>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25,
             complete sequence
          Length = 136578

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 113   gtacataatactagtagata 132
             ||||||||||||||||||||
Sbjct: 29208 gtacataatactagtagata 29189

>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 408     aatttaccttgggaaggatg 427
               ||||||||||||||||||||
Sbjct: 1331079 aatttaccttgggaaggatg 1331060


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,385,525
Number of Sequences: 3902068
Number of extensions: 3385525
Number of successful extensions: 55446
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55331
Number of HSP's gapped (non-prelim): 115
length of query: 524
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 501
effective length of database: 17,143,297,704
effective search space: 8588792149704
effective search space used: 8588792149704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)