ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KAPP_ARATH (P46014) Kinase-associated protein phosphatase (EC 3.... 42 4e-04
2EPOR_PIG (Q9MYZ9) Erythropoietin receptor precursor (EPO-R) 30 1.1
3REIS_TODPA (P23820) Retinochrome (Retinal photoisomerase) 29 3.2
4TALA_POVBK (P03071) Large T antigen 28 5.4
5TALA_POVBA (P14999) Large T antigen 28 5.4
6EPOR_HUMAN (P19235) Erythropoietin receptor precursor (EPO-R) 28 7.0
7RECR_BDEBA (Q6MH30) Recombination protein recR 27 9.2

>KAPP_ARATH (P46014) Kinase-associated protein phosphatase (EC 3.1.3.16)|
          Length = 581

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = -3

Query: 377 SQAVAHPDVGSRRWSEPAELADGDIIT 297
           S +++HPD+GSR+W  P ELA  DIIT
Sbjct: 256 SHSISHPDLGSRKWGNPVELASDDIIT 282



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>EPOR_PIG (Q9MYZ9) Erythropoietin receptor precursor (EPO-R)|
          Length = 509

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +3

Query: 75  EYVYTRVQFD-LCIDKCTGDSYQAEGYSSNALYTNIYIYIRLTIVDPSPVNDVSC 236
           +Y+Y  V    +  D  +G S + +G SS+  Y+N Y    +   +PSP N V+C
Sbjct: 454 KYLYLVVSDSGISTDYSSGGSQETQGGSSSGPYSNPYENSLVPAPEPSPPNYVTC 508



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>REIS_TODPA (P23820) Retinochrome (Retinal photoisomerase)|
          Length = 301

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 118 LSIHKSNCTLVYTYSDMSLCSYIF 47
           L +H ++CT+ Y+ SD S  SY+F
Sbjct: 160 LEVHGTSCTINYSVSDESYQSYVF 183



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>TALA_POVBK (P03071) Large T antigen|
          Length = 695

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 57  LHNDISEYVYTRVQFDLCIDKCTGDSYQAE 146
           L ++IS Y ++R+++++C+ KC  D  + E
Sbjct: 605 LDSEISMYTFSRMKYNICMGKCILDITREE 634



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>TALA_POVBA (P14999) Large T antigen|
          Length = 691

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = +3

Query: 57  LHNDISEYVYTRVQFDLCIDKCTGDSYQAE 146
           L ++IS Y ++R+++++C+ KC  D  + E
Sbjct: 605 LDSEISMYTFSRMKYNICMGKCILDITREE 634



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>EPOR_HUMAN (P19235) Erythropoietin receptor precursor (EPO-R)|
          Length = 508

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 75  EYVYTRVQFD-LCIDKCTGDSYQAEGYSSNALYTNIYIYIRLTIVDPSPVNDVSC 236
           +Y+Y  V    +  D  +GDS  A+G  S+  Y+N Y    +   +P P + V+C
Sbjct: 453 KYLYLVVSDSGISTDYSSGDSQGAQGGLSDGPYSNPYENSLIPAAEPLPPSYVAC 507



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>RECR_BDEBA (Q6MH30) Recombination protein recR|
          Length = 204

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -1

Query: 235 HETS-LTGDGSTIVNRIYIYILVYNAFELYPSA**ESPVHLSIHKSNCTLVYTYSDMSLC 59
           HE S L G G     R+  YIL       YP    E+ + +     +C   + Y+D  +C
Sbjct: 12  HELSRLPGIGPKTAQRLAYYIL--RTGNEYPERLSEALLRVKAEVHDCPTCFNYTDTDIC 69

Query: 58  SY 53
            Y
Sbjct: 70  RY 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,546,674
Number of Sequences: 219361
Number of extensions: 876680
Number of successful extensions: 1650
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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