ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41l08 |
|---|---|
| Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 107 bits (266), Expect = 2e-23 Identities = 62/106 (58%), Positives = 66/106 (62%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVKACAAC*HLHEPGSSG*C*PGCDEDWFLLRLENSPYTP 253 PK TV KLLEYGHM VQEQDNVK + G D + ++ S Y Sbjct: 376 PKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALG------DANQDAMKT-GSFY-- 426 Query: 252 TISCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 --------GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464 Score = 59.3 bits (142), Expect = 4e-09 Identities = 28/28 (100%), Positives = 28/28 (100%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFYG 276 VQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 400 VQLADTYMSQAALGDANQDAMKTGSFYG 427
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 79.0 bits (193), Expect = 5e-15 Identities = 48/107 (44%), Positives = 58/107 (54%), Gaps = 1/107 (0%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVKACAAC*HLHEPGSSG*C*PGCDEDWFLLRLENSPYTP 253 PK T+ KLL YG M VQEQ+NVK + G + D ++ + Sbjct: 386 PKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALG----DANND----AIKRGTFY- 436 Query: 252 TISCCIGGGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 -------GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476 Score = 48.9 bits (115), Expect = 5e-06 Identities = 22/28 (78%), Positives = 25/28 (89%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFYG 276 VQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 410 VQLADKYMSEAALGDANNDAIKRGTFYG 437
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 78.6 bits (192), Expect = 6e-15 Identities = 45/106 (42%), Positives = 54/106 (50%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVKACAAC*HLHEPGSSG*C*PGCDEDWFLLRLENSPYTP 253 P+ T KL+EYG+M V EQ+NVK E + Sbjct: 386 PEMTYEKLMEYGNMLVMEQENVKRVQLA-----------------ETYLSQAALGDANAD 428 Query: 252 TISCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 115 I GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 429 AIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474 Score = 46.6 bits (109), Expect = 3e-05 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFYG 276 VQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 410 VQLAETYLSQAALGDANADAIGRGTFYG 437
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 77.8 bits (190), Expect = 1e-14 Identities = 45/104 (43%), Positives = 58/104 (55%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVKACAAC*HLHEPGSSG*C*PGCDEDWFLLRLENSPYTP 253 P+ T+ KL+EYG+M VQEQ+NVK + G ++D ++ + Sbjct: 384 PEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALG----DANKD----AIDRGTFF- 434 Query: 252 TISCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 121 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 --------GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470 Score = 44.7 bits (104), Expect = 1e-04 Identities = 20/28 (71%), Positives = 24/28 (85%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFYG 276 VQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 408 VQLADQYMSSAALGDANKDAIDRGTFFG 435
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 49.3 bits (116), Expect(2) = 1e-12 Identities = 22/28 (78%), Positives = 25/28 (89%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFYG 276 VQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 397 VQLADKYLSEAALGQANDDAMKTGAFYG 424 Score = 41.6 bits (96), Expect(2) = 1e-12 Identities = 17/23 (73%), Positives = 20/23 (86%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK T+ KL+EYGHM VQEQ+NVK Sbjct: 373 PKMTIEKLMEYGHMLVQEQENVK 395
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 49.7 bits (117), Expect(2) = 4e-12 Identities = 22/28 (78%), Positives = 25/28 (89%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFYG 276 VQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 410 VQLADKYLSEAALGDANSDAMNTGTFYG 437 Score = 39.7 bits (91), Expect(2) = 4e-12 Identities = 17/23 (73%), Positives = 20/23 (86%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK T+ KLLEYG+M VQEQ+NVK Sbjct: 386 PKMTIEKLLEYGNMLVQEQENVK 408
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 51.2 bits (121), Expect(2) = 5e-12 Identities = 23/28 (82%), Positives = 26/28 (92%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFYG 276 VQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 400 VQLAEQYLSEAALGDANSDAMKTGSFYG 427 Score = 37.7 bits (86), Expect(2) = 5e-12 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK T+ KL+EYG+M V+EQ+NVK Sbjct: 376 PKMTIEKLIEYGYMLVKEQENVK 398
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 47.0 bits (110), Expect(2) = 2e-11 Identities = 20/27 (74%), Positives = 26/27 (96%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFY 279 VQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 406 VQLADKYLNEAALGEANEDAMKTGSFF 432 Score = 40.0 bits (92), Expect(2) = 2e-11 Identities = 17/23 (73%), Positives = 19/23 (82%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK T+ KLLEYGHM V EQ+NVK Sbjct: 382 PKITIEKLLEYGHMLVAEQENVK 404
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 45.8 bits (107), Expect(2) = 2e-10 Identities = 21/26 (80%), Positives = 24/26 (92%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSF 282 VQLAD YMS+AALGDANQDA+K G+F Sbjct: 410 VQLADKYMSEAALGDANQDAIKRGTF 435 Score = 37.4 bits (85), Expect(2) = 2e-10 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK T+ KLL+YG+M V+EQ+NVK Sbjct: 386 PKMTIDKLLQYGNMLVEEQENVK 408
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 42.0 bits (97), Expect(2) = 5e-10 Identities = 18/26 (69%), Positives = 23/26 (88%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSF 282 VQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 414 VQLAETYLKEAALGDANADAINTGNF 439 Score = 40.0 bits (92), Expect(2) = 5e-10 Identities = 18/23 (78%), Positives = 20/23 (86%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK TV KLLEYG+M VQEQ+NVK Sbjct: 390 PKMTVEKLLEYGNMLVQEQENVK 412
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 41.6 bits (96), Expect(2) = 9e-10 Identities = 18/27 (66%), Positives = 22/27 (81%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFY 279 VQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 414 VQLADKYLKEAALGDANADAINNGSFF 440 Score = 39.7 bits (91), Expect(2) = 9e-10 Identities = 17/23 (73%), Positives = 20/23 (86%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK T+ KLLEYG+M VQEQ+NVK Sbjct: 390 PKMTIEKLLEYGNMLVQEQENVK 412
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 43.5 bits (101), Expect(2) = 3e-09 Identities = 18/27 (66%), Positives = 26/27 (96%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFY 279 VQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 412 VQLADKYLNEAALGNANEDAIKSGSFF 438 Score = 36.2 bits (82), Expect(2) = 3e-09 Identities = 15/23 (65%), Positives = 20/23 (86%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK ++ KLL+YG+M VQEQ+NVK Sbjct: 388 PKMSLDKLLQYGNMLVQEQENVK 410
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 39.3 bits (90), Expect(2) = 7e-09 Identities = 17/24 (70%), Positives = 21/24 (87%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTG 288 VQLA+TY+ +AALGDAN DA+ TG Sbjct: 409 VQLAETYLKEAALGDANADAINTG 432 Score = 38.9 bits (89), Expect(2) = 7e-09 Identities = 17/23 (73%), Positives = 20/23 (86%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK T+ KLLEYG+M VQEQ+NVK Sbjct: 385 PKMTLEKLLEYGNMLVQEQENVK 407
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 43.5 bits (101), Expect(2) = 3e-08 Identities = 18/27 (66%), Positives = 26/27 (96%) Frame = -3 Query: 359 VQLADTYMSQAALGDANQDAMKTGSFY 279 VQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 414 VQLADQYLNEAALGNANEDAIKSGSFF 440 Score = 32.7 bits (73), Expect(2) = 3e-08 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK T+ KLL Y M VQEQ+NVK Sbjct: 390 PKMTLDKLLLYASMLVQEQENVK 412
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 37.7 bits (86), Expect = 0.012 Identities = 16/23 (69%), Positives = 19/23 (82%) Frame = -2 Query: 432 PKXTVXKLLEYGHMFVQEQDNVK 364 PK T+ KLLEYG+M V EQ+NVK Sbjct: 383 PKMTIEKLLEYGNMLVMEQENVK 405
>SPON1_CHICK (Q9W770) Spondin-1 precursor (F-spondin)| Length = 802 Score = 29.6 bits (65), Expect = 3.2 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%) Frame = +2 Query: 173 FWSVQPSGTGKVPCCAPLPPPMQQEMVGVY---GEFSNRRRNQSSSHPG*HHPELPGSCR 343 FW+ P+GTG C L + Q+ + + G + R Q S+ G C Sbjct: 141 FWTAPPTGTG----CVILKASIVQKRIIYFQDEGSLTKRICEQDSASEGVTDKPTLDCCA 196 Query: 344 CQQAAHALTLSCSWT 388 C A + LT +W+ Sbjct: 197 CGTAKYRLTFYGNWS 211
>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Heart-specific serine proteinase ATC2) (Transmembrane protease, serine 10) Length = 1042 Score = 29.3 bits (64), Expect = 4.2 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +3 Query: 246 RWWVCMENFLTVEGTSLHRILVSITQSCLAHVGVSKLHTP*HC 374 RW N+ ++ GT+LH +LV+ QSC + +S L T C Sbjct: 749 RWLTLHSNWESLNGTTLHELLVN-GQSCESRSKISLLCTKQDC 790
>YKAB_BACPF (P30268) Probable aminotransferase in katA 3'region (EC 2.6.-.-)| (ORF B) Length = 445 Score = 29.3 bits (64), Expect = 4.2 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 286 EPVFIASWLASPRAAWLM*VSASCTRLDIVLLLDE 390 EPV P A+WL V C R DI+L+ DE Sbjct: 218 EPVLGEGGYIIPPASWLAKVREICNRHDILLIFDE 252
>SPON1_HUMAN (Q9HCB6) Spondin-1 precursor (F-spondin) (Vascular smooth muscle| cell growth-promoting factor) Length = 807 Score = 28.9 bits (63), Expect = 5.5 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%) Frame = +2 Query: 173 FWSVQPSGTGKVPCCAPLPPPMQQEMVGVY---GEFSNRRRNQSSSHPG*HHPELPGSCR 343 FW P+GTG C L + Q+ + + G + + Q S+ G + C Sbjct: 146 FWIAPPAGTG----CVILKASIVQKRIIYFQDEGSLTKKLCEQDSTFDGVTDKPILDCCA 201 Query: 344 CQQAAHALTLSCSWT 388 C A + LT +W+ Sbjct: 202 CGTAKYRLTFYGNWS 216
>SPON1_BOVIN (Q9GLX9) Spondin-1 precursor (F-spondin) (Vascular smooth muscle| cell growth-promoting factor) Length = 807 Score = 28.9 bits (63), Expect = 5.5 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%) Frame = +2 Query: 173 FWSVQPSGTGKVPCCAPLPPPMQQEMVGVY---GEFSNRRRNQSSSHPG*HHPELPGSCR 343 FW P+GTG C L + Q+ + + G + + Q S+ G + C Sbjct: 146 FWIAPPAGTG----CVILKASIVQKRIIYFQDEGSLTKKLCEQDSTFDGVTDKPILDCCA 201 Query: 344 CQQAAHALTLSCSWT 388 C A + LT +W+ Sbjct: 202 CGTAKYRLTFYGNWS 216
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 5.5 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -2 Query: 288 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 130 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 7.2 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +3 Query: 132 CRRRSLPLGRSSWHFGRCNLP 194 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>YR083_MIMIV (Q5UPG3) Hypothetical protein R83| Length = 133 Score = 28.1 bits (61), Expect = 9.4 Identities = 11/38 (28%), Positives = 18/38 (47%) Frame = +2 Query: 314 HHPELPGSCRCQQAAHALTLSCSWTNMCPYSSSFXTVI 427 +H ++P S + + TL+ WTN C S+ I Sbjct: 82 YHDQIPKSIYRESVLNKYTLTIKWTNYCSLESAITKTI 119 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,703,519 Number of Sequences: 219361 Number of extensions: 1351457 Number of successful extensions: 3383 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3267 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3381 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
