| Clone Name | rbaal41l07 |
|---|---|
| Clone Library Name | barley_pub |
>TOCC_MAIZE (Q94FY8) Probable tocopherol cyclase, chloroplast precursor| (Sucrose export defective 1) Length = 474 Score = 162 bits (409), Expect = 8e-40 Identities = 72/87 (82%), Positives = 79/87 (90%) Frame = -1 Query: 550 AGFVPACKDTCYGDLKLQMWEKKYDGSKGKMILDTTSNMAAVEVGGGPWFNGWKGTTASP 371 AG VPACKDTCYGDL+LQ+WEKKYDGSKG+MILD TSNMAA+EVGGGPWFNGWKGTT Sbjct: 388 AGLVPACKDTCYGDLRLQLWEKKYDGSKGEMILDATSNMAALEVGGGPWFNGWKGTTVVN 447 Query: 370 ELLNNIVGTQIDVESLFPIPILKPPGL 290 E++NNIVGT +DVESL PIP LKPPGL Sbjct: 448 EVVNNIVGTPVDVESLLPIPFLKPPGL 474
>TOCC_ARATH (Q94FY7) Tocopherol cyclase, chloroplast precursor (Vitamin E| pathway gene 1 protein) (Sucrose export defective 1) Length = 488 Score = 114 bits (286), Expect = 1e-25 Identities = 53/88 (60%), Positives = 68/88 (77%), Gaps = 2/88 (2%) Frame = -1 Query: 547 GFVPACKDTCYGDLKLQMWEKKYDGSKGKMILDTTSNMAAVEVGGGPWFNGWKGTTA-SP 371 G AC+D+CYG+LKLQ+WE+ YDGSKGK+IL+T S+MAAVE+GGGPWF WKG T+ +P Sbjct: 401 GLATACRDSCYGELKLQIWERLYDGSKGKVILETKSSMAAVEIGGGPWFGTWKGDTSNTP 460 Query: 370 ELLNNIVGTQIDVES-LFPIPILKPPGL 290 ELL + +D+ES L +P KPPGL Sbjct: 461 ELLKQALQVPLDLESALGLVPFFKPPGL 488
>CE110_HUMAN (O43303) Centrosomal protein of 110 kDa (Cep110 protein)| Length = 1012 Score = 30.8 bits (68), Expect = 2.6 Identities = 15/41 (36%), Positives = 19/41 (46%) Frame = +2 Query: 341 LSTNNVIQKLRRSSRAFPPVEPGTSPNFHRRHVACGVKYHL 463 ++ NNVI+ L S P EP SP HRR H+ Sbjct: 348 VTENNVIKSLTGSYAKLPSPEPSMSPKMHRRRSRTSSACHI 388
>Y258_HAEIN (P43974) Putative glycosyl transferase HI0258 (EC 2.-.-.-)| Length = 330 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/47 (29%), Positives = 29/47 (61%) Frame = +2 Query: 230 QN*QRNLDWLQFLQFLRINLQTRGLENWNREQALDIDLSTNNVIQKL 370 QN + +D++ + R+NL T+ ++N + +D+D TN+ +Q+L Sbjct: 107 QNFPKTIDYISLATYARLNL-TKYIKNIEKAIYIDVDTLTNSSLQEL 152
>ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing protein ZFN-like 2| Length = 437 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = -3 Query: 434 GGGGSWGRSLVQRVERHDCFA*ASE*HCWYSNRCR 330 GGGG G S +R + DC C Y +RCR Sbjct: 17 GGGGGGGESYPERPDEPDCIYYLRTGVCGYGSRCR 51
>PA2_AIPLA (P08872) Phospholipase A2 precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 144 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Frame = -3 Query: 506 QAANVGKEIRWEQREDDT*HHKQHGGGGSWGRSLVQRVERHD-CFA*ASE*HCW-----Y 345 Q AN GK W + + GG G+ +L + + HD C+ A + C+ Y Sbjct: 37 QCANKGKRATWHYMDYGC--YCGSGGSGTPVDALDRCCKAHDDCYGVAEDNGCYPKWTLY 94 Query: 344 SNRCREPVPDSNSQA 300 S +C E VP NS++ Sbjct: 95 SWQCTENVPTCNSES 109
>H6ST1_CRIGR (Q91ZB4) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)| (HS6ST-1) (Fragment) Length = 403 Score = 30.0 bits (66), Expect = 4.5 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = -3 Query: 488 KEIRWEQREDDT*H--HKQHGGGGSWGRSLVQRVERH---DCFA*ASE*HCWYSNRCREP 324 + +R++ + DD H Q GG ++GR LVQ V DC + C+ NR RE Sbjct: 69 RSLRFDMKGDDVIVFLHIQKTGGTTFGRHLVQNVRLEVPCDCRPGQKKCTCYRPNR-RET 127 Query: 323 VPDSNSQAPWSVGL 282 S WS GL Sbjct: 128 WLFSRFSTGWSCGL 141
>Y326_METJA (Q57772) Hypothetical protein MJ0326| Length = 436 Score = 30.0 bits (66), Expect = 4.5 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = +3 Query: 243 GT*TGFNFFSSSE*TYRPGGLRIGIGNRLSTSI*VPTMLFRSSGEAVVPFHPLNQGPPPT 422 GT G +S+ TY I +G R V MLF S + F+P+ + PP Sbjct: 293 GTVVGSLLGTSTVTTYIESASGIALGGRTGFVSVVVAMLFLLS----LFFYPVVKAIPPY 348 Query: 423 STAAMLLVVSSII 461 +TAA L++V +++ Sbjct: 349 ATAAALVIVGALM 361
>FATH_HUMAN (Q14517) Cadherin-related tumor suppressor homolog precursor (Protein| fat homolog) Length = 4590 Score = 30.0 bits (66), Expect = 4.5 Identities = 14/57 (24%), Positives = 24/57 (42%) Frame = -3 Query: 356 HCWYSNRCREPVPDSNSQAPWSVGLF*GTEEIEASLGSFASFAIN*PCSSLFSQKKR 186 H + C + P+ PW++GL G + G F + C + S+KK+ Sbjct: 4157 HEYRGRHCEDAAPNQYVSTPWNIGLAEGIGIVVFVAGIFLLVVVFVLCRKMISRKKK 4213
>H6ST1_MOUSE (Q9QYK5) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)| (HS6ST-1) (mHS6ST-1) Length = 411 Score = 30.0 bits (66), Expect = 4.5 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = -3 Query: 488 KEIRWEQREDDT*H--HKQHGGGGSWGRSLVQRVERH---DCFA*ASE*HCWYSNRCREP 324 + +R++ + DD H Q GG ++GR LVQ V DC + C+ NR RE Sbjct: 77 RSLRFDMKGDDVIVFLHIQKTGGTTFGRHLVQNVRLEVPCDCRPGQKKCTCYRPNR-RET 135 Query: 323 VPDSNSQAPWSVGL 282 S WS GL Sbjct: 136 WLFSRFSTGWSCGL 149
>H6ST1_HUMAN (O60243) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)| (HS6ST-1) Length = 410 Score = 30.0 bits (66), Expect = 4.5 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%) Frame = -3 Query: 488 KEIRWEQREDDT*H--HKQHGGGGSWGRSLVQRVERH---DCFA*ASE*HCWYSNRCREP 324 + +R++ + DD H Q GG ++GR LVQ V DC + C+ NR RE Sbjct: 76 RSLRFDMKGDDVIVFLHIQKTGGTTFGRHLVQNVRLEVPCDCRPGQKKCTCYRPNR-RET 134 Query: 323 VPDSNSQAPWSVGL 282 S WS GL Sbjct: 135 WLFSRFSTGWSCGL 148
>CE110_MOUSE (Q7TSH4) Centrosomal protein of 110 kDa (Cep110 protein)| Length = 1004 Score = 29.3 bits (64), Expect = 7.7 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +2 Query: 347 TNNVIQKLRRSSRAFPPVEPGTSPNFHRRH 436 T N ++ L+ P EP SP HRRH Sbjct: 348 TENKVKSLKGPYAKLPSPEPSMSPTMHRRH 377
>MRT4_MOUSE (Q9D0I8) mRNA turnover protein 4 homolog| Length = 239 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 6/47 (12%) Frame = -2 Query: 183 KNSPVLIMLAQAPDDAYREKRHSVTS------WLSFSNVTEDKPHLW 61 KN +++ L ++P D Y++ H V+ L F+N T+++ + W Sbjct: 69 KNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEW 115
>MRT4_HUMAN (Q9UKD2) mRNA turnover protein 4 homolog| Length = 239 Score = 28.9 bits (63), Expect = 10.0 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 6/47 (12%) Frame = -2 Query: 183 KNSPVLIMLAQAPDDAYREKRHSVTS------WLSFSNVTEDKPHLW 61 KN +++ L ++P D Y++ H V+ L F+N T+++ + W Sbjct: 69 KNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEW 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,939,489 Number of Sequences: 219361 Number of extensions: 1829716 Number of successful extensions: 5048 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 4928 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5048 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)