ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8m03 |
|---|---|
| Clone Library Name | barley_pub |
>MP83_MYCTU (P0A670) Cell surface lipoprotein MPT83 precursor (Lipoprotein p23)| Length = 220 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +3 Query: 285 AFFTSCSSRQESSGDTIPRPVAAPAASAFDSCQEDHATTI 404 AF CSS + S DT P+P +PAA + D A + Sbjct: 20 AFLAGCSSTKPVSQDTSPKPATSPAAPVTTAAMADPAADL 59
>MP83_MYCBO (P0A671) Cell surface lipoprotein MPB83 precursor (Lipoprotein p23)| Length = 220 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = +3 Query: 285 AFFTSCSSRQESSGDTIPRPVAAPAASAFDSCQEDHATTI 404 AF CSS + S DT P+P +PAA + D A + Sbjct: 20 AFLAGCSSTKPVSQDTSPKPATSPAAPVTTAAMADPAADL 59
>ZDHC7_RAT (Q923G5) Palmitoyltransferase ZDHHC7 (EC 2.3.1.-) (Zinc finger DHHC| domain-containing protein 7) (DHHC-7) (Sertoli cell gene with a zinc finger domain protein) Length = 308 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = -2 Query: 489 GILW*CKSVRFLSG-FRLMSTAPGRTKCTLWLLHGPPGNYRMQMLLGLQLAVGSYPLSFP 313 G+L+ C +V LS R M T PG P GN + + LQL G P Sbjct: 83 GVLFNCLAVLALSSHLRTMLTDPGAV---------PKGNATKEYMESLQLKPGEVIYKCP 133 Query: 312 VCCC 301 CCC Sbjct: 134 KCCC 137
>ZDHC7_MOUSE (Q91WU6) Palmitoyltransferase ZDHHC7 (EC 2.3.1.-) (Zinc finger DHHC| domain-containing protein 7) (DHHC-7) (GABA-A receptor-associated membrane protein 2) Length = 308 Score = 32.0 bits (71), Expect = 1.5 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = -2 Query: 489 GILW*CKSVRFLSG-FRLMSTAPGRTKCTLWLLHGPPGNYRMQMLLGLQLAVGSYPLSFP 313 G+L+ C +V LS R M T PG P GN + + LQL G P Sbjct: 83 GVLFNCLAVLALSSHLRTMLTDPGAV---------PKGNATKEYMESLQLKPGEVIYKCP 133 Query: 312 VCCC 301 CCC Sbjct: 134 KCCC 137
>CK5P1_MOUSE (Q8BTW8) CDK5 regulatory subunit-associated protein 1 (CDK5| activator-binding protein C42) Length = 588 Score = 32.0 bits (71), Expect = 1.5 Identities = 19/68 (27%), Positives = 29/68 (42%) Frame = -1 Query: 619 RTCRAATEPSASPCPCKXXXXXXXXXXXXXRQSGSASFLHILRGNSVVMQECAVSLRLSP 440 RTCRA + S++PCP R + +F H LR SV ++ + P Sbjct: 26 RTCRAQSSVSSTPCPSPEAKSSEAQKDFSSRLATGPTFQHFLRSASVPQEKPSSPEVEDP 85 Query: 439 DVYGTGPD 416 Y +G + Sbjct: 86 PPYLSGDE 93
>ZDHC7_HUMAN (Q9NXF8) Palmitoyltransferase ZDHHC7 (EC 2.3.1.-) (Zinc finger DHHC| domain-containing protein 7) (DHHC-7) (Zinc finger protein 370) Length = 308 Score = 31.2 bits (69), Expect = 2.6 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = -2 Query: 489 GILW*CKSVRFLSG-FRLMSTAPGRTKCTLWLLHGPPGNYRMQMLLGLQLAVGSYPLSFP 313 G+++ C +V LS R M T PG P GN + + LQL G P Sbjct: 83 GVIFNCLAVLALSSHLRTMLTDPGAV---------PKGNATKEYMESLQLKPGEVIYKCP 133 Query: 312 VCCC 301 CCC Sbjct: 134 KCCC 137
>WAPL_DROME (Q9W517) Protein wings apart-like (Protein parallel sister| chromatids) Length = 1741 Score = 30.0 bits (66), Expect = 5.8 Identities = 28/113 (24%), Positives = 46/113 (40%) Frame = +3 Query: 45 QTXASAGKQRQCTGETKLFYNFFLQPSLFVSTDIRQVQENNGSAREKQNYFCPDTCRVIF 224 Q +++GKQ+Q + + PS + + V N E + Y P +I Sbjct: 209 QPSSASGKQKQKKPKEEKKLKPEAPPSRVLGRARKAV--NYREVDEDERYPTPTKDLIIP 266 Query: 225 IEKKAPARGQQMSRLLRGNQAFFTSCSSRQESSGDTIPRPVAAPAASAFDSCQ 383 + PA + L + F S + S ++P P +AP+ASA S Q Sbjct: 267 KAGRQPAEVAATATLAAASSEAFISSTFGSPGSEPSLPPPTSAPSASASTSSQ 319
>RBN_NEIMB (Q9K0R0) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)| Length = 406 Score = 30.0 bits (66), Expect = 5.8 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +1 Query: 511 MPNRFVDKRNAGVTVRARGACXGTAKQTAPWRPGKF 618 +PNRFV R A V A C TA+ W G F Sbjct: 200 VPNRFVPARQAFVGALATAFCLETARSLFTWYMGNF 235
>RBN_NEIMA (Q9JVT9) tRNA-processing ribonuclease BN (EC 3.1.-.-) (RNase BN)| Length = 408 Score = 30.0 bits (66), Expect = 5.8 Identities = 15/36 (41%), Positives = 17/36 (47%) Frame = +1 Query: 511 MPNRFVDKRNAGVTVRARGACXGTAKQTAPWRPGKF 618 +PNRFV R A V A C TA+ W G F Sbjct: 200 VPNRFVPARQAFVGALATAFCLETARSLFTWYMGNF 235
>DAPB_PSYAR (Q4FVQ6) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)| Length = 278 Score = 29.6 bits (65), Expect = 7.6 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = -2 Query: 438 MSTAPGRTKCTLWLLHGPPGNYRMQMLLGL 349 M+ A G + W++ P G Y MQ +LGL Sbjct: 245 MTFAAGAVRAATWIVQQPVGQYNMQDVLGL 274
>RBS_GOSHI (P31333) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 182 Score = 29.6 bits (65), Expect = 7.6 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 172 LPLFSCTCLMSVLTNREGCKKKL*NNFV 89 LP+F CT VL E CKK+ N F+ Sbjct: 131 LPMFGCTDSAQVLEELENCKKEYPNAFI 158
>RBS1A_ARATH (P10795) Ribulose bisphosphate carboxylase small chain 1A,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1A) Length = 180 Score = 29.3 bits (64), Expect = 10.0 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -1 Query: 172 LPLFSCTCLMSVLTNREGCKKKL*NNFV 89 LPLF CT VL E CKK+ N F+ Sbjct: 127 LPLFGCTDSAQVLKEVEECKKEYPNAFI 154 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,446,615 Number of Sequences: 219361 Number of extensions: 2085397 Number of successful extensions: 6247 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5965 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6244 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5767334219 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
