ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41j23 |
|---|---|
| Clone Library Name | barley_pub |
>SYT_TREDE (Q73NR2) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 585 Score = 35.0 bits (79), Expect = 0.068 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Frame = +1 Query: 40 GAATRAINDLVDFMGRLPKHEHRVTRRHLGDFGASYNIYHI-------YFSHHVEWTVYA 198 G A NDL +++ L + E R RR G + N++HI F H WT+Y Sbjct: 162 GTAWEKPNDLKEYLAMLEEAEKRDHRR----IGKAMNLFHIDEENPGQIFWHPKGWTLYL 217 Query: 199 YIHTYIR 219 I Y+R Sbjct: 218 TIQNYVR 224
>SYT_PROMP (Q7V287) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 638 Score = 30.0 bits (66), Expect = 2.2 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Frame = +1 Query: 40 GAATRAINDLVDFMGRLPKHEHRVTRRHLGDFGASYNIYHIY-------FSHHVEWTVYA 198 G A +L D++ R+ + E R R+ G ++++HI F H WT+Y Sbjct: 219 GTAWAKEKELNDYLKRIEEAEKRDHRK----LGKKHSLFHIQEESPGMIFWHPNGWTIYQ 274 Query: 199 YIHTYIR 219 + Y+R Sbjct: 275 VLEKYVR 281
>SYT_HAEDU (Q7VKR9) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 643 Score = 29.6 bits (65), Expect = 2.9 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Frame = +1 Query: 40 GAATRAINDLVDFMGRLPKHEHRVTRRHLGDFGASYNIYHIY-------FSHHVEWTVYA 198 G A L +++ RL + R RR G + ++YH+ F H+ WT++ Sbjct: 220 GTAWADKKQLTEYLTRLEEAAKRDHRR----IGKALDLYHMQEEAPGMVFWHNDGWTIFR 275 Query: 199 YIHTYIRT 222 + T++RT Sbjct: 276 ELETFVRT 283
>SYT_ANAMM (Q5P9F6) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 636 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/58 (27%), Positives = 23/58 (39%) Frame = +1 Query: 46 ATRAINDLVDFMGRLPKHEHRVTRRHLGDFGASYNIYHIYFSHHVEWTVYAYIHTYIR 219 ++ A+ + M K +HR + LG F F H W +Y I YIR Sbjct: 226 SSEALASYIHNMQEAEKRDHRKIAKDLGWFHIQNEALGQVFWHDKGWVIYRIIEEYIR 283
>SYT_WIGBR (Q8D3C0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 636 Score = 29.3 bits (64), Expect = 3.7 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 7/58 (12%) Frame = +1 Query: 67 LVDFMGRLPKHEHRVTRRHLGDFGASYNIYHIY-------FSHHVEWTVYAYIHTYIR 219 L +F+ + + EHR R+ G +++HIY F HH W ++ + +IR Sbjct: 228 LKNFIKNIKELEHRDHRK----IGKKLDLFHIYENSPGMVFWHHNGWIIFRILEKFIR 281
>RBP1_PLAVB (Q00798) Reticulocyte binding protein 1 precursor| Length = 2833 Score = 29.3 bits (64), Expect = 3.7 Identities = 17/65 (26%), Positives = 31/65 (47%) Frame = +1 Query: 73 DFMGRLPKHEHRVTRRHLGDFGASYNIYHIYFSHHVEWTVYAYIHTYIRT*GENEKSYIR 252 D G L + ++ H G+F SYN+ + S+ +++V +R E E+ ++R Sbjct: 1755 DMTGDLKNYAVKMNEIH-GEFTKSYNLIETHLSNATDYSVTFEKAQSLRELAEKEEEHLR 1813 Query: 253 RANTE 267 R E Sbjct: 1814 RREEE 1818
>SYT_HAEIN (P43014) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 643 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 7/68 (10%) Frame = +1 Query: 40 GAATRAINDLVDFMGRLPKHEHRVTRRHLGDFGASYNIYHIY-------FSHHVEWTVYA 198 G A L +++ RL + R R+ G + ++YH+ F H+ WT++ Sbjct: 220 GTAWADKKQLAEYLTRLEEAAKRDHRK----IGKALDLYHMQEEAPGMVFWHNDGWTIFR 275 Query: 199 YIHTYIRT 222 + T++RT Sbjct: 276 ELETFVRT 283
>Y011_NPVAC (P41421) Hypothetical 40.1 kDa protein in PK1-LEF1 intergenic| region (ORF10) Length = 340 Score = 28.5 bits (62), Expect = 6.4 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Frame = -1 Query: 178 RDVRSRC-DIYYMRRRNLQDAYELLYAHALGDAP*NQL 68 +D +C D+Y +NL+D ++LL+AH++ D N L Sbjct: 276 KDFGRQCKDVY----KNLKDVFDLLHAHSMSDKDKNSL 309
>GT2D1_MOUSE (Q9JI57) General transcription factor II-I repeat domain-containing| protein 1 (GTF2I repeat domain-containing protein 1) (Binding factor for early enhancer) Length = 1104 Score = 28.1 bits (61), Expect = 8.3 Identities = 10/36 (27%), Positives = 23/36 (63%) Frame = -1 Query: 190 RSIRRDVRSRCDIYYMRRRNLQDAYELLYAHALGDA 83 RS+ R +C Y+ ++ +++ +++LY+ A+G A Sbjct: 112 RSLPRSSLEQCSDVYLLQKMVEEVFDVLYSEAMGRA 147
>SYT_VIBVY (Q7MK65) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 642 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/56 (25%), Positives = 25/56 (44%) Frame = +1 Query: 52 RAINDLVDFMGRLPKHEHRVTRRHLGDFGASYNIYHIYFSHHVEWTVYAYIHTYIR 219 +A+ D + + K +HR + L F + F HH W+V+ + +IR Sbjct: 228 KALKDHLTRLEEAAKRDHRKIGKQLDLFHMQQEAPGMVFWHHNGWSVFRDLEVFIR 283
>SYT_VIBVU (Q8DA13) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 642 Score = 28.1 bits (61), Expect = 8.3 Identities = 14/56 (25%), Positives = 25/56 (44%) Frame = +1 Query: 52 RAINDLVDFMGRLPKHEHRVTRRHLGDFGASYNIYHIYFSHHVEWTVYAYIHTYIR 219 +A+ D + + K +HR + L F + F HH W+V+ + +IR Sbjct: 228 KALKDHLTRLEEAAKRDHRKIGKQLDLFHMQQEAPGMVFWHHNGWSVFRDLEVFIR 283
>SYT_MANSM (Q65TQ0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA| ligase) (ThrRS) Length = 643 Score = 28.1 bits (61), Expect = 8.3 Identities = 13/60 (21%), Positives = 28/60 (46%) Frame = +1 Query: 43 AATRAINDLVDFMGRLPKHEHRVTRRHLGDFGASYNIYHIYFSHHVEWTVYAYIHTYIRT 222 A + +N+ + + K +HR + L + + F H+ WT++ + T++RT Sbjct: 224 ADKKQLNEYLTRLEEAAKRDHRKIGKALDLYHMQEEAPGMVFWHNDGWTIFRELETFVRT 283 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,211,112 Number of Sequences: 219361 Number of extensions: 765840 Number of successful extensions: 1522 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1496 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1518 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
