ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41j16 |
|---|---|
| Clone Library Name | barley_pub |
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/61 (36%), Positives = 26/61 (42%) Frame = -1 Query: 535 PGSAGHAGEPCSMGDQXTHCSETEDGLRGGFRSIGLEASRRGVSVRGAI*GGEGMHLPGR 356 PGS G AG P + G S G RG G + G + GGEG LPGR Sbjct: 1307 PGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGR 1366 Query: 355 R 353 + Sbjct: 1367 K 1367
>PTPRZ_RAT (Q62656) Receptor-type tyrosine-protein phosphatase zeta precursor| (EC 3.1.3.48) (R-PTP-zeta) (Phosphacan) (3F8 chondroitin sulfate proteoglycan) (3H1 keratan sulfate proteoglycan) Length = 2316 Score = 31.2 bits (69), Expect = 2.0 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%) Frame = +3 Query: 372 MPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*S--PILQGSPA 518 +PS P+ LTETP+ E S + P S S+ S+ +H + P+L SP+ Sbjct: 1207 LPSGPRDPVLTETPMVEQSSSSVSLPLASESASSKSTLHFTSVPVLNMSPS 1257
>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)| Length = 1430 Score = 31.2 bits (69), Expect = 2.0 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = +3 Query: 360 PGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSP 515 P P P + PL PL + S +KPP SP + Q V +QGSP Sbjct: 1196 PPPAEPPPTDLMPLPPLPLPDGSARKPVKPPVSPKPILAQPV---SKIQGSP 1244
>COLQ_RAT (O35167) Acetylcholinesterase collagenic tail peptide precursor| (AChE Q subunit) (Acetylcholinesterase-associated collagen) Length = 458 Score = 31.2 bits (69), Expect = 2.0 Identities = 24/71 (33%), Positives = 30/71 (42%) Frame = +3 Query: 324 IPLLHQIQ*GRRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPIL 503 +P L Q + G C+ PP PL P SR LL P ++ E SP + Sbjct: 37 LPGLDQKKRGNHKACCLLMPPP-PPLFPPPFFRGSRSPLLSPDMK--NLLELEASPSPCM 93 Query: 504 QGSPACPADPG 536 QGS P PG Sbjct: 94 QGSLGSPGPPG 104
>COLQ_MOUSE (O35348) Acetylcholinesterase collagenic tail peptide (AChE Q| subunit) (Acetylcholinesterase-associated collagen) (Fragment) Length = 236 Score = 30.8 bits (68), Expect = 2.7 Identities = 24/71 (33%), Positives = 30/71 (42%) Frame = +3 Query: 324 IPLLHQIQ*GRRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPIL 503 +P L Q + G C+ PP PL P SR LL P ++ E SP + Sbjct: 1 LPGLDQKKRGSHKACCLLMPPP-PPLFPPPFFRGSRSPLLSPDMK--NLLELEASPSPCI 57 Query: 504 QGSPACPADPG 536 QGS P PG Sbjct: 58 QGSLGSPGPPG 68
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 30.0 bits (66), Expect = 4.5 Identities = 21/52 (40%), Positives = 22/52 (42%) Frame = +3 Query: 360 PGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSP 515 P P P +A L P E KPP SP V Q V P LQGSP Sbjct: 1195 PPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPV---PKLQGSP 1243
>COLQ_HUMAN (Q9Y215) Acetylcholinesterase collagenic tail peptide precursor| (AChE Q subunit) (Acetylcholinesterase-associated collagen) Length = 456 Score = 30.0 bits (66), Expect = 4.5 Identities = 22/71 (30%), Positives = 29/71 (40%) Frame = +3 Query: 324 IPLLHQIQ*GRRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPIL 503 +P L Q + G C+ +PP PL P R LL P + + SP + Sbjct: 37 LPSLDQKKRGGHKACCLLTPPP-PPLFPPPFFRGGRSPLLSPDMKNLMLELETSQ-SPCM 94 Query: 504 QGSPACPADPG 536 QGS P PG Sbjct: 95 QGSLGSPGPPG 105
>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor| Length = 920 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -1 Query: 532 GSAGHAGEPCSMGDQXTHCSETEDGLRGGFRSIGLEASRRGVSVRG 395 G G AGEP G+Q SE + G +G +GL ++ V G Sbjct: 662 GDRGSAGEPGPKGEQGAPGSEGDAGEKGDLGDMGLPGAKGSVGNPG 707
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.3 bits (64), Expect = 7.8 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +3 Query: 360 PGRCMPSPPQIAPLTETPLREASRPMLLKPP----RSPSSVSEQCVH*SPILQGSPACPA 527 P +P PP A TPL A P + P + SS++ + + QG+PA P Sbjct: 1594 PPHPLPDPPSPA----TPLPAAPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGAPAAPG 1649 Query: 528 DP 533 DP Sbjct: 1650 DP 1651
>POLG_YEFV2 (P19901) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3411 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -1 Query: 478 CSETEDGLRGGFRSIGLEASRRGVSV 401 C EDG+ G F+S L AS+RGV V Sbjct: 1501 CEHLEDGIYGIFQSTFLGASQRGVGV 1526
>POLG_YEFV1 (P03314) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3411 Score = 29.3 bits (64), Expect = 7.8 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -1 Query: 478 CSETEDGLRGGFRSIGLEASRRGVSV 401 C EDG+ G F+S L AS+RGV V Sbjct: 1501 CEHLEDGIYGIFQSTFLGASQRGVGV 1526 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,023,240 Number of Sequences: 219361 Number of extensions: 1328071 Number of successful extensions: 4048 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4029 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
