ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal41j16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105327.1| Zea mays PCO147247 mRNA sequence 135 2e-28
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
3dbj|AK071188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
4gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
5emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa... 109 1e-20
6gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, comple... 103 6e-19
7dbj|AK059556.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
8ref|XM_417003.1| PREDICTED: Gallus gallus similar to highwire; P... 54 5e-04
9emb|CR353672.1| Gallus gallus finished cDNA, clone ChEST231o13 54 5e-04
10gb|BT013858.1| Lycopersicon esculentum clone 132824R, mRNA sequence 50 0.008
11ref|NM_015057.2| Homo sapiens MYC binding protein 2 (MYCBP2), mRNA 46 0.12
12emb|AL159158.12| Human DNA sequence from clone RP11-81G4 on chro... 46 0.12
13gb|AF075587.1|AF075587 Homo sapiens protein associated with Myc ... 46 0.12
14gb|AY579201.1| Tetrahymena thermophila DNA topoisomerase type 2 ... 44 0.48
15ref|XM_809076.1| Trypanosoma cruzi strain CL Brener 69 kDa paraf... 44 0.48
16ref|XM_797553.1| Trypanosoma cruzi strain CL Brener paraxonemal ... 44 0.48
17ref|XM_802852.1| Trypanosoma cruzi strain CL Brener 69 kDa paraf... 44 0.48
18gb|M97548.1|TRBPAR2A Trypanosoma cruzi major paraflagellar rod p... 44 0.48
19gb|AC136523.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
20emb|Z49131.1|CEZC373 Caenorhabditis elegans Cosmid ZC373, comple... 42 1.9
21gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete se... 42 1.9
22gb|AC019205.4| Homo sapiens BAC clone RP11-398K22 from 6, comple... 42 1.9
23ref|NM_077291.2| Caenorhabditis elegans COLlagen family member (... 42 1.9
24dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
25dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
26dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
27dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
28dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
29dbj|AP005933.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
30gb|U91900.1|DBU91900 Dunaliella bardawil phytoene synthase mRNA,... 42 1.9
31gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, com... 40 7.5
32gb|AC131083.8| Mus musculus chromosome 1, clone RP23-444L13, com... 40 7.5
33gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 7.5
34ref|NM_001031001.1| Gallus gallus serpin peptidase inhibitor, cl... 40 7.5
35gb|DQ465931.1| Fusarium oxysporum isolate SAT75 translation elon... 40 7.5
36gb|AC121917.2| Mus musculus BAC clone RP24-194F23 from 5, comple... 40 7.5
37emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 7.5
38gb|J00922.1|CHKY Gallus gallus ovalbumin (oval-Y) gene, complete... 40 7.5
39gb|AC105383.3| Homo sapiens BAC clone RP11-9G1 from 4, complete ... 40 7.5
40gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, co... 40 7.5
41gb|AC164661.3| Pan troglodytes BAC clone CH251-11F8 from chromos... 40 7.5
42gb|AC164107.3| Mus musculus BAC clone RP23-461D6 from chromosome... 40 7.5
43gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromoso... 40 7.5
44gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromos... 40 7.5 
>gb|AY105327.1| Zea mays PCO147247 mRNA sequence
          Length = 1954

 Score =  135 bits (68), Expect = 2e-28
 Identities = 159/190 (83%)
 Strand = Plus / Minus

                                                                        
Query: 364  gaagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaag 423
            ||||||| | |||||||| ||||| || |||||||| || ||||| ||||| ||||| ||
Sbjct: 1593 gaagatgtacgccttcacttcctcgaagcgctcctcggagagagagacctcggcgaggag 1534

                                                                        
Query: 424  cctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtg 483
              |||| || || | ||| || ||||||||  ||||| ||||||||||||| || |||||
Sbjct: 1533 tttccacgcggaggtttcagatgcctcctcatagtccatcctccgtttcagcaccatgtg 1474

                                                                        
Query: 484  tncactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctnacttc 543
            | ||||||||||||| || || ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 1473 tccactgatctcccacacagctgggttcacctgagtgtccagcagctcctggctcacttc 1414

                      
Query: 544  accaagagcc 553
            ||| ||||||
Sbjct: 1413 acccagagcc 1404
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  109 bits (55), Expect = 1e-20
 Identities = 155/189 (82%)
 Strand = Plus / Plus

                                                                           
Query: 365     aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 424
               |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || 
Sbjct: 4532519 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 4532578

                                                                           
Query: 425     ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 484
               ||||| || || |||||||| ||||||||| | ||  |||| |||||||| || ||||| 
Sbjct: 4532579 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 4532638

                                                                           
Query: 485     ncactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctnacttca 544
                ||||||||||||| || || ||||| |||||||||||||| || |||||||| ||||| 
Sbjct: 4532639 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggctcacttct 4532698

                        
Query: 545     ccaagagcc 553
               || ||||||
Sbjct: 4532699 cccagagcc 4532707
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>dbj|AK071188.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M14, full
            insert sequence
          Length = 2088

 Score =  109 bits (55), Expect = 1e-20
 Identities = 155/189 (82%)
 Strand = Plus / Minus

                                                                        
Query: 365  aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 424
            |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || 
Sbjct: 1631 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 1572

                                                                        
Query: 425  ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 484
            ||||| || || |||||||| ||||||||| | ||  |||| |||||||| || ||||| 
Sbjct: 1571 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 1512

                                                                        
Query: 485  ncactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctnacttca 544
             ||||||||||||| || || ||||| |||||||||||||| || |||||||| ||||| 
Sbjct: 1511 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggctcacttct 1452

                     
Query: 545  ccaagagcc 553
            || ||||||
Sbjct: 1451 cccagagcc 1443
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  109 bits (55), Expect = 1e-20
 Identities = 155/189 (82%)
 Strand = Plus / Plus

                                                                           
Query: 365     aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 424
               |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || 
Sbjct: 4532500 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 4532559

                                                                           
Query: 425     ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 484
               ||||| || || |||||||| ||||||||| | ||  |||| |||||||| || ||||| 
Sbjct: 4532560 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 4532619

                                                                           
Query: 485     ncactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctnacttca 544
                ||||||||||||| || || ||||| |||||||||||||| || |||||||| ||||| 
Sbjct: 4532620 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggctcacttct 4532679

                        
Query: 545     ccaagagcc 553
               || ||||||
Sbjct: 4532680 cccagagcc 4532688
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>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129155

 Score =  109 bits (55), Expect = 1e-20
 Identities = 155/189 (82%)
 Strand = Plus / Minus

                                                                         
Query: 365   aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 424
             |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || 
Sbjct: 72259 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 72200

                                                                         
Query: 425   ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 484
             ||||| || || |||||||| ||||||||| | ||  |||| |||||||| || ||||| 
Sbjct: 72199 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 72140

                                                                         
Query: 485   ncactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctnacttca 544
              ||||||||||||| || || ||||| |||||||||||||| || |||||||| ||||| 
Sbjct: 72139 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggctcacttct 72080

                      
Query: 545   ccaagagcc 553
             || ||||||
Sbjct: 72079 cccagagcc 72071
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>gb|AY596553.1| Saccharum officinarum clone SCUTLR1058C02, complete sequence
          Length = 1732

 Score =  103 bits (52), Expect = 6e-19
 Identities = 155/190 (81%)
 Strand = Plus / Minus

                                                                        
Query: 364  gaagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaag 423
            ||||||| | |||||||| ||||| || |||||||| || || || ||||| || || ||
Sbjct: 1335 gaagatgtacgccttcacttcctcgaagcgctcctcagagagggagacctcagcaaggag 1276

                                                                        
Query: 424  cctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtg 483
            | |||| || || | ||| || ||||||||  ||||  ||||||| ||||| || |||||
Sbjct: 1275 cttccacgcggaggtttcagatgcctcctcatagtcgttcctccgcttcagcacgatgtg 1216

                                                                        
Query: 484  tncactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctnacttc 543
              ||||||||||||| || || ||||||||||| ||||||||||| |||||||| |||||
Sbjct: 1215 gccactgatctcccacacagctgggttcacctgagtgtccagcagctcctggctcacttc 1156

                      
Query: 544  accaagagcc 553
            ||| ||||||
Sbjct: 1155 acccagagcc 1146
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>dbj|AK059556.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G08, full
           insert sequence
          Length = 1295

 Score =  101 bits (51), Expect = 2e-18
 Identities = 154/189 (81%)
 Strand = Plus / Minus

                                                                       
Query: 365 aagatgcatgccttcacctcctcaaatcgctcctctgacagagacacctctgcgagaagc 424
           |||||| | |||||||| ||||| || || ||||| ||||| || ||||| ||||| || 
Sbjct: 873 aagatgtaggccttcacttcctcgaagcgttcctccgacagggaaacctcagcgaggagt 814

                                                                       
Query: 425 ctccaggccgatgcttctgaagcctcctcgaagtccgtcctccgtttcagaacaatgtgt 484
           ||||| || || |||||||| ||||||||| | ||  |||| |||||||| || ||||| 
Sbjct: 813 ctccacgcagaagcttctgatgcctcctcgtaatcactccttcgtttcagcacgatgtgg 754

                                                                       
Query: 485 ncactgatctcccatactgcagggttcacctgcgtgtccagcagatcctggctnacttca 544
            ||||||||||||| || || ||||| |||||||||||||| || |||||||  ||||| 
Sbjct: 753 ccactgatctcccacacagctgggttaacctgcgtgtccagtagctcctggcccacttct 694

                    
Query: 545 ccaagagcc 553
           || ||||||
Sbjct: 693 cccagagcc 685
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>ref|XM_417003.1| PREDICTED: Gallus gallus similar to highwire; PAM; rpm 1
           (LOC418808), mRNA
          Length = 16077

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 310 aggtggctcgttggattcctcttcttcatca 340
           ||||||||| |||||||||||||||||||||
Sbjct: 900 aggtggctctttggattcctcttcttcatca 870
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>emb|CR353672.1| Gallus gallus finished cDNA, clone ChEST231o13
          Length = 1096

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                          
Query: 310 aggtggctcgttggattcctcttcttcatca 340
           ||||||||| |||||||||||||||||||||
Sbjct: 568 aggtggctctttggattcctcttcttcatca 538
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>gb|BT013858.1| Lycopersicon esculentum clone 132824R, mRNA sequence
          Length = 2013

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                        
Query: 482  tgtncactgatctcccatactgcagggttcacctgcgtgtccag 525
            ||| |||| || |||||||| |||||||||||||| ||||||||
Sbjct: 1502 tgtccactaatttcccatacagcagggttcacctgagtgtccag 1459
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>ref|NM_015057.2| Homo sapiens MYC binding protein 2 (MYCBP2), mRNA
          Length = 14734

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 314 ggctcgttggattcctcttcttcatca 340
           ||||| |||||||||||||||||||||
Sbjct: 552 ggctctttggattcctcttcttcatca 526
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>emb|AL159158.12| Human DNA sequence from clone RP11-81G4 on chromosome 13 Contains the
             5' end of a novel gene (KIAA0916) and two CpG islands,
             complete sequence
          Length = 154682

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 314   ggctcgttggattcctcttcttcatca 340
             ||||| |||||||||||||||||||||
Sbjct: 15043 ggctctttggattcctcttcttcatca 15069
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>gb|AF075587.1|AF075587 Homo sapiens protein associated with Myc mRNA, complete cds
          Length = 14807

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 314 ggctcgttggattcctcttcttcatca 340
           ||||| |||||||||||||||||||||
Sbjct: 607 ggctctttggattcctcttcttcatca 581
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>gb|AY579201.1| Tetrahymena thermophila DNA topoisomerase type 2 (TOP2A) mRNA,
            complete cds
          Length = 4430

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 325  ttcctcttcttcatcagattca 346
            ||||||||||||||||||||||
Sbjct: 4222 ttcctcttcttcatcagattca 4201
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>ref|XM_809076.1| Trypanosoma cruzi strain CL Brener 69 kDa paraflagellar rod protein
            (Tc00.1047053511215.119) partial mRNA
          Length = 1803

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 376  cttcacctcctcaaatcgctcc 397
            ||||||||||||||||||||||
Sbjct: 1089 cttcacctcctcaaatcgctcc 1068
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>ref|XM_797553.1| Trypanosoma cruzi strain CL Brener paraxonemal rod protein PAR2
           (Tc00.1047053434931.10) partial mRNA
          Length = 795

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 376 cttcacctcctcaaatcgctcc 397
           ||||||||||||||||||||||
Sbjct: 81  cttcacctcctcaaatcgctcc 60
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>ref|XM_802852.1| Trypanosoma cruzi strain CL Brener 69 kDa paraflagellar rod protein
           (Tc00.1047053508961.79) partial mRNA
          Length = 1080

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 376 cttcacctcctcaaatcgctcc 397
           ||||||||||||||||||||||
Sbjct: 366 cttcacctcctcaaatcgctcc 345
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>gb|M97548.1|TRBPAR2A Trypanosoma cruzi major paraflagellar rod protein (PAR2) mRNA,
            complete cds
          Length = 2057

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 376  cttcacctcctcaaatcgctcc 397
            ||||||||||||||||||||||
Sbjct: 1137 cttcacctcctcaaatcgctcc 1116
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>gb|AC136523.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0018C06,
             complete sequence
          Length = 179695

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 320   ttggattcctcttcttcatca 340
             |||||||||||||||||||||
Sbjct: 27655 ttggattcctcttcttcatca 27675
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>emb|Z49131.1|CEZC373 Caenorhabditis elegans Cosmid ZC373, complete sequence
          Length = 27030

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 513   cctgcgtgtccagcagatcctggct 537
             |||| ||||||||||||||||||||
Sbjct: 23716 cctgggtgtccagcagatcctggct 23692
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>gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete sequence
          Length = 114031

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 323  gattcctcttcttcatcagat 343
            |||||||||||||||||||||
Sbjct: 8255 gattcctcttcttcatcagat 8275
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>gb|AC019205.4| Homo sapiens BAC clone RP11-398K22 from 6, complete sequence
          Length = 198052

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   ggtaactaatcagaggcagaa 126
             |||||||||||||||||||||
Sbjct: 95865 ggtaactaatcagaggcagaa 95885
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>ref|NM_077291.2| Caenorhabditis elegans COLlagen family member (col-176) (col-176)
           mRNA, complete cds
          Length = 939

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 513 cctgcgtgtccagcagatcctggct 537
           |||| ||||||||||||||||||||
Sbjct: 559 cctgggtgtccagcagatcctggct 535
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 320     ttggattcctcttcttcatca 340
               |||||||||||||||||||||
Sbjct: 7050851 ttggattcctcttcttcatca 7050831
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 320      ttggattcctcttcttcatca 340
                |||||||||||||||||||||
Sbjct: 11944841 ttggattcctcttcttcatca 11944861
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 326      tcctcttcttcatcagattca 346
                |||||||||||||||||||||
Sbjct: 17929939 tcctcttcttcatcagattca 17929919
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>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0520B06
          Length = 142667

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 326   tcctcttcttcatcagattca 346
             |||||||||||||||||||||
Sbjct: 49774 tcctcttcttcatcagattca 49754
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>dbj|AP006615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1165C09
          Length = 202985

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 320    ttggattcctcttcttcatca 340
              |||||||||||||||||||||
Sbjct: 168899 ttggattcctcttcttcatca 168879
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>dbj|AP005933.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0674B07
          Length = 192191

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 320   ttggattcctcttcttcatca 340
             |||||||||||||||||||||
Sbjct: 96337 ttggattcctcttcttcatca 96317
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>gb|U91900.1|DBU91900 Dunaliella bardawil phytoene synthase mRNA, complete cds
          Length = 1278

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 367 gatgcatgccttcacctcctc 387
           |||||||||||||||||||||
Sbjct: 984 gatgcatgccttcacctcctc 964
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>gb|AC168306.7| Mus musculus chromosome 18, clone RP23-225N9, complete sequence
          Length = 198815

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    acacatacctgtgcttaata 61
             ||||||||||||||||||||
Sbjct: 62708 acacatacctgtgcttaata 62727
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>gb|AC131083.8| Mus musculus chromosome 1, clone RP23-444L13, complete sequence
          Length = 182591

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 424    cctccaggccgatgcttctg 443
              ||||||||||||||||||||
Sbjct: 172560 cctccaggccgatgcttctg 172541
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 347     gtgaggccggcggcctggaa 366
               ||||||||||||||||||||
Sbjct: 2138822 gtgaggccggcggcctggaa 2138803
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>ref|NM_001031001.1| Gallus gallus serpin peptidase inhibitor, clade B (ovalbumin), member
            3 (SERPINB3), mRNA
          Length = 1972

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  attcctcttcttcatcagat 343
            ||||||||||||||||||||
Sbjct: 1162 attcctcttcttcatcagat 1181
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>gb|DQ465931.1| Fusarium oxysporum isolate SAT75 translation elongation factor 1a
           gene, partial sequence
          Length = 686

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 208 ccagagtcgacttggccgat 227
           ||||||||||||||||||||
Sbjct: 48  ccagagtcgacttggccgat 29
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>gb|AC121917.2| Mus musculus BAC clone RP24-194F23 from 5, complete sequence
          Length = 178113

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    taataataaactgcacagta 76
             ||||||||||||||||||||
Sbjct: 77669 taataataaactgcacagta 77688
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 352     gccggcggcctggaagatgc 371
               ||||||||||||||||||||
Sbjct: 3489405 gccggcggcctggaagatgc 3489386
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>gb|J00922.1|CHKY Gallus gallus ovalbumin (oval-Y) gene, complete cds
          Length = 8372

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 324  attcctcttcttcatcagat 343
            ||||||||||||||||||||
Sbjct: 7457 attcctcttcttcatcagat 7476
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>gb|AC105383.3| Homo sapiens BAC clone RP11-9G1 from 4, complete sequence
          Length = 173956

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   attttcattgctctctcact 245
             ||||||||||||||||||||
Sbjct: 96917 attttcattgctctctcact 96898
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>gb|AC131072.13| Mus musculus chromosome 1, clone RP23-396F21, complete sequence
          Length = 192542

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 424   cctccaggccgatgcttctg 443
             ||||||||||||||||||||
Sbjct: 20950 cctccaggccgatgcttctg 20931
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>gb|AC164661.3| Pan troglodytes BAC clone CH251-11F8 from chromosome unknown, complete
             sequence
          Length = 184521

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   gtaactaatcagaggcagaa 126
             ||||||||||||||||||||
Sbjct: 87780 gtaactaatcagaggcagaa 87761
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>gb|AC164107.3| Mus musculus BAC clone RP23-461D6 from chromosome 14, complete sequence
          Length = 181095

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   agcagccacagataatgcgaacct 202
             ||||||||||||||||| ||||||
Sbjct: 23334 agcagccacagataatgagaacct 23311
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>gb|AC159826.1| Gallus gallus BAC clone CH261-57J20 from chromosome unknown, complete
              sequence
          Length = 207137

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    attcctcttcttcatcagat 343
              ||||||||||||||||||||
Sbjct: 177383 attcctcttcttcatcagat 177402
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>gb|AC157662.2| Gallus gallus BAC clone CH261-183P12 from chromosome unknown, complete
             sequence
          Length = 205302

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   attcctcttcttcatcagat 343
             ||||||||||||||||||||
Sbjct: 54146 attcctcttcttcatcagat 54165


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,275,360
Number of Sequences: 3902068
Number of extensions: 4275360
Number of successful extensions: 78963
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78753
Number of HSP's gapped (non-prelim): 210
length of query: 553
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 530
effective length of database: 17,143,297,704
effective search space: 9085947783120
effective search space used: 9085947783120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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