ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal41j14 |
|---|---|
| Clone Library Name | barley_pub |
>LCYB_ARATH (Q38933) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 501 Score = 167 bits (424), Expect = 1e-41 Identities = 76/93 (81%), Positives = 87/93 (93%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 P +RRRQREFFCFGMD+LLKLDL TRRFF+AFFDL+PHYWHGFLSSRLFLPELL+FGLS Sbjct: 409 PIERRRQREFFCFGMDILLKLDLDATRRFFDAFFDLQPHYWHGFLSSRLFLPELLVFGLS 468 Query: 354 LFAHASTTSKLEIMAKGTVPLAKMVGNLIQDKN 256 LF+HAS TS+LEIM KGTVPLAKM+ NL+QD++ Sbjct: 469 LFSHASNTSRLEIMTKGTVPLAKMINNLVQDRD 501
>LCYB_NARPS (Q40424) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 503 Score = 162 bits (411), Expect = 4e-40 Identities = 74/93 (79%), Positives = 85/93 (91%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 P +RRRQREFFCFGMD+LLKLDL+GTRRFF+AFFDLEP YWHGFLSSRLFLPEL+ FGLS Sbjct: 411 PIERRRQREFFCFGMDILLKLDLEGTRRFFDAFFDLEPRYWHGFLSSRLFLPELVPFGLS 470 Query: 354 LFAHASTTSKLEIMAKGTVPLAKMVGNLIQDKN 256 LF+HAS T KLEIMAKGT+PL M+ NL+QD++ Sbjct: 471 LFSHASNTCKLEIMAKGTLPLVNMINNLVQDRD 503
>LCYB_LYCES (Q43503) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 500 Score = 160 bits (404), Expect = 3e-39 Identities = 73/92 (79%), Positives = 82/92 (89%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 P +RRRQREFFCFGMD+LLKLDL TRRFF+AFFDLEP YWHGFLSSRLFLPEL++FGLS Sbjct: 408 PIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLS 467 Query: 354 LFAHASTTSKLEIMAKGTVPLAKMVGNLIQDK 259 LF+HAS TS+ EIM KGTVPL M+ NL+QDK Sbjct: 468 LFSHASNTSRFEIMTKGTVPLVNMINNLLQDK 499
>LCYB_CAPAN (Q43415) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 498 Score = 160 bits (404), Expect = 3e-39 Identities = 73/92 (79%), Positives = 83/92 (90%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 P +RRRQREFFCFGMD+LLKLDL TRRFF+AFFDLEP YWHGFLSSRLFLPEL++FGLS Sbjct: 406 PIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGLS 465 Query: 354 LFAHASTTSKLEIMAKGTVPLAKMVGNLIQDK 259 LF+HAS TS+LEIM KGT+PL M+ NL+QDK Sbjct: 466 LFSHASNTSRLEIMTKGTLPLVHMINNLLQDK 497
>LCYB_TOBAC (Q43578) Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-)| Length = 500 Score = 153 bits (386), Expect = 3e-37 Identities = 69/91 (75%), Positives = 80/91 (87%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 P +RRRQREFFCFGMD+LLKLDL TRRFF+AFFDLEP YWHGFLSSRL+LPEL+ FGLS Sbjct: 408 PIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLYLPELIFFGLS 467 Query: 354 LFAHASTTSKLEIMAKGTVPLAKMVGNLIQD 262 LF+ AS TS++EIM KGT+PL M+ NL+QD Sbjct: 468 LFSRASNTSRIEIMTKGTLPLVNMINNLLQD 498
>CCS_CITSI (Q9SEA0) Capsanthin/capsorubin synthase, chloroplast precursor (EC| 5.3.99.8) Length = 503 Score = 125 bits (313), Expect = 1e-28 Identities = 60/88 (68%), Positives = 70/88 (79%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 P DRR REF+ FGM+ LLKLDL+GTRRFF+AFFDL P+YWHGFLSSRL L EL LS Sbjct: 411 PIDRRCNREFYSFGMETLLKLDLKGTRRFFDAFFDLNPYYWHGFLSSRLSLAELAGLSLS 470 Query: 354 LFAHASTTSKLEIMAKGTVPLAKMVGNL 271 LF HAS +S+L+I+ K VPL KM+GNL Sbjct: 471 LFGHASNSSRLDIVTKCPVPLVKMMGNL 498
>CCS_CAPAN (Q42435) Capsanthin/capsorubin synthase, chloroplast precursor (EC| 5.3.99.8) Length = 498 Score = 122 bits (307), Expect = 5e-28 Identities = 56/88 (63%), Positives = 71/88 (80%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 P+DRRR RE +CFGM+ LLKLDL+GTRR F+AFFD++P YWHGFLSSRL + EL + L Sbjct: 406 PSDRRRVRECYCFGMETLLKLDLEGTRRLFDAFFDVDPKYWHGFLSSRLSVKELAVLSLY 465 Query: 354 LFAHASTTSKLEIMAKGTVPLAKMVGNL 271 LF HAS ++L+I+ K TVPL K++GNL Sbjct: 466 LFGHASNLARLDIVTKCTVPLVKLLGNL 493
>LCYE_LYCES (O65837) Lycopene epsilon cyclase, chloroplast precursor (EC| 1.14.-.-) Length = 526 Score = 65.1 bits (157), Expect = 1e-10 Identities = 28/62 (45%), Positives = 41/62 (66%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 P +R+RQR FF FG+ ++L+LD++G R FF AFF + W GFL S L +L++F Sbjct: 434 PQERKRQRSFFLFGLALILQLDIEGIRSFFRAFFRVPKWMWQGFLGSSLSSADLMLFAFY 493 Query: 354 LF 349 +F Sbjct: 494 MF 495
>LCYE_ARATH (Q38932) Lycopene epsilon cyclase, chloroplast precursor (EC| 1.14.-.-) Length = 524 Score = 61.2 bits (147), Expect = 2e-09 Identities = 27/62 (43%), Positives = 39/62 (62%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 P +R+RQR FF FG+ ++++ D +G R FF FF L W GFL S L +L++F L Sbjct: 432 PPERKRQRAFFLFGLALIVQFDTEGIRSFFRTFFRLPKWMWQGFLGSTLTSGDLVLFALY 491 Query: 354 LF 349 +F Sbjct: 492 MF 493
>LCYB_SYNP7 (Q55276) Lycopene beta cyclase (EC 1.14.-.-)| Length = 411 Score = 50.8 bits (120), Expect = 2e-06 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = -2 Query: 534 PTDRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLS 355 PT++ R+ + FG++ L++ F FF L W+GFL++ L LPEL+ L Sbjct: 321 PTEKIRKHYIYQFGLEKLMRFSEAQLNHHFQTFFGLPKEQWYGFLTNTLSLPELIQAMLR 380 Query: 354 LFAHASTTSKLEIM 313 LFA A + +M Sbjct: 381 LFAQAPNDVRWGLM 394
>ZCHC8_MOUSE (Q9CYA6) Zinc finger CCHC domain-containing protein 8| Length = 709 Score = 31.2 bits (69), Expect = 1.9 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +2 Query: 296 GTVPLAMISSLDVVEACANS--ESPNMRSSGRNSLDERKPCQ*CGSRSKNALKKRRVPWR 469 G++P+ DV + NS +SP+MRSSG+ S + P N+ KK+R Sbjct: 388 GSIPMQACQQKDVFASYLNSNIQSPSMRSSGKRSSSQSSP---------NSPKKQRKEGS 438 Query: 470 SSLSRTSM 493 ++ S M Sbjct: 439 AAASPADM 446
>Y801_DEIRA (Q9RW68) Putative carotenoid cyclase DR0801| Length = 410 Score = 30.8 bits (68), Expect = 2.5 Identities = 21/71 (29%), Positives = 27/71 (38%) Frame = -2 Query: 528 DRRRQREFFCFGMDVLLKLDLQGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLMFGLSLF 349 +RR RE G+ LL L+ FF FF L W FL L L +F Sbjct: 317 ERRAAREVHLLGVGALLGLERAELPHFFGTFFGLPREQWARFLHPDTDAGTLARTMLRVF 376 Query: 348 AHASTTSKLEI 316 A +L + Sbjct: 377 AQTGGRVRLPL 387
>YPT6_CAEEL (P41884) Hypothetical protein F37A4.6| Length = 389 Score = 29.6 bits (65), Expect = 5.5 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +1 Query: 460 TLEVELEQDVHAEAEEFPLPPP 525 TL++ ++ D +A+ FPLPPP Sbjct: 262 TLDIPVDDDAEIDADVFPLPPP 283
>SO3A1_HUMAN (Q9UIG8) Solute carrier organic anion transporter family member 3A1| (Solute carrier family 21 member 11) (Sodium-independent organic anion transporter D) (Organic anion-transporting polypeptide D) (OATP-D) (Organic anion transporter polypepti Length = 710 Score = 29.3 bits (64), Expect = 7.2 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -1 Query: 139 NSTASNSSLGPPGRCNNSCCC 77 NSTA S+L P CNN+C C Sbjct: 457 NSTAPGSALDPYSPCNNNCEC 477
>PERX_WHEAT (P15984) Peroxidase (EC 1.11.1.7) (Fragment)| Length = 80 Score = 29.3 bits (64), Expect = 7.2 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 10/50 (20%) Frame = +2 Query: 260 LSCIKLPTILARG----------TVPLAMISSLDVVEACANSESPNMRSS 379 +SC + T+ AR TVPL S+D EA ANS+ P SS Sbjct: 23 VSCADILTVAARDSVVALGGPSWTVPLGRRDSIDANEAEANSDLPGFNSS 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,862,110 Number of Sequences: 219361 Number of extensions: 1099866 Number of successful extensions: 2994 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2875 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2992 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
